Rw1G005470

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000342
Physical Location & Seq
Forward (+)
10773203 .. 10774809
1607 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G005470.1

Sequence Viewer

Length: 1092 bp
ATGGAGGTGGAGCAAGTCCTTCACATGAATGGCGGATGTGGGAGAACAAGCTATTCAAACAACTCGCTTCATCAAAGAGCAGCGATTTTATGGGTGAAGCCCATTTTAGATGCAAGCATAGAGAAGCTGTGTTGCTTCAACCTCCCTGCAGAGTGTTTGAGGATAGCTGACTTGGGATGTTCTTCAGGACCAAACACCCTTTTAGTCGTATCAAATGTCATCGACATGATCCAGAATACATGTCAAAAATTGAACTGTCGACCTCCATCGCTCCAAGTATTTTTGAATGATCTTCCCCAAAACGACTTTAACACAGTTTTCAAATCATTGCCAAGCTTCTACAAAAAACTCGAAGAAAGCAAGTGGCTGGAGCCATGCTTCATTGCAGGAATGCCCGGTTCTTTCTATGGCAGGCTCTTTCCTCAGAGTTCTATGACCTTTTTTCACTCTTCTTACTCTTTGCACTGGATCTCTAAGGTTCCAGAAGGTTTGGTAACAAAAGGAGGACTCAACGAGGGAAACATATGCATAGCCAAGACAAGCCCACCTTCTGTGTTTAATGAATACTTTGAGCAATTTAAGAAACACTTCAGAGTGTTTCTAAGGTCTCGTGCAGAAGAGTTGGTCCCTCAGGGTAGAATGGTCCTCACAATCAGGGGGAGCATAAACAGTCATGAACCCCTCTCTATATTCGAATTTCTTGGATTGAAAATCAATGATATGGTTTTAGAGGGTTTGATTGAAAAGAAAAACTTAGACTACTTCAATATTCCATACTATGAACCTACAATGGAGGAACTGATGGAGCTGATCGAGACCGAAGGATCCTTTAGGTTGCCGGACCATCAAGTGTTTAAACGTGATTGGGACTCTTCTATAAAGGAAGCTGATAGTGGTCTCGGTAAGAAAGCAAGGGCGGGTATACTTTCCACTCAAATTAGGTCTGTGGTGGAGCCTCTTCTGATCAGTCACTTTGGAGAGGGACTCATGGAAGATTTGTTTCACAGGTTTGAAAAAGATGTTCTTGATCACATGGAAAAGGAGAAGTGCCAGTGTATAGATATAGTTCTATCGTTGACAAAGGAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

363

Amino Acids

41.4

Weight (kDa)

5.75

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 40 - 361 1.4e-115 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 259, 922
AciI CCGC 2 cut(s) 33, 917
AclWI GGATC 4 cut(s) 223, 476, 819, 832
AcsI RAATTY 1 cut(s) 695
AcuI CTGAAG 2 cut(s) 168, 574
AflIII ACRYGT 1 cut(s) 239
AgsI TTSAA 9 cut(s) 57, 139, 253, 286, 322, 709, 743, 766, 1013
AluBI AGCT 6 cut(s) 51, 127, 167, 336, 808, 887
AluI AGCT 6 cut(s) 51, 127, 167, 336, 808, 887
Alw26I GTCTC 3 cut(s) 612, 809, 902
AlwI GGATC 4 cut(s) 223, 476, 819, 832
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 1 cut(s) 695
Asp700I GAANNNNTTC 1 cut(s) 587
AspS9I GGNCC 4 cut(s) 188, 625, 643, 841
AsuC2I CCSGG 1 cut(s) 396
AsuHPI GGTGA 1 cut(s) 106
AsuII TTCGAA 1 cut(s) 693
AvaII GGWCC 4 cut(s) 188, 625, 643, 841
AxyI CCTNAGG 1 cut(s) 630
BamHI GGATCC 1 cut(s) 824
BauI CACGAG 1 cut(s) 609
BbvI GCAGC 1 cut(s) 92
BccI CCATC 3 cut(s) 274, 796, 852
BclI TGATCA 2 cut(s) 963, 1027
BcnI CCSGG 1 cut(s) 396
BcoDI GTCTC 3 cut(s) 612, 809, 902
BfmI CTRYAG 1 cut(s) 147
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme1390I CCNGG 1 cut(s) 396
Bme18I GGWCC 4 cut(s) 188, 625, 643, 841
BmgT120I GGNCC 4 cut(s) 188, 625, 643, 841
BmiI GGNNCC 5 cut(s) 372, 480, 627, 826, 954
BmrFI CCNGG 1 cut(s) 396
BmsI GCATC 1 cut(s) 100
BplI GAGNNNNNCTC 2 cut(s) 969, 1001
BpmI CTGGAG 1 cut(s) 389
Bpu14I TTCGAA 1 cut(s) 693
BpuMI CCSGG 1 cut(s) 396
BsaI GGTCTC 3 cut(s) 612, 809, 902
Bse1I ACTGG 2 cut(s) 470, 1051
Bse21I CCTNAGG 1 cut(s) 630
Bse3DI GCAATG 2 cut(s) 326, 381
BseGI GGATG 2 cut(s) 41, 182
BseMI GCAATG 2 cut(s) 326, 381
BseMII CTCAG 2 cut(s) 437, 644
BseNI ACTGG 2 cut(s) 470, 1051
BseXI GCAGC 1 cut(s) 92
BsgI GTGCAG 1 cut(s) 633
BsiSI CCGG 2 cut(s) 396, 839
BslFI GGGAC 3 cut(s) 611, 881, 996
BsmAI GTCTC 3 cut(s) 612, 809, 902
BsmFI GGGAC 3 cut(s) 611, 881, 996
BsmI GAATGC 1 cut(s) 396
Bso31I GGTCTC 3 cut(s) 612, 809, 902
Bsp119I TTCGAA 1 cut(s) 693
Bsp143I GATC 7 cut(s) 228, 289, 468, 810, 824, 963, 1027
BspACI CCGC 2 cut(s) 33, 917
BspCNI CTCAG 2 cut(s) 436, 643
BspHI TCATGA 1 cut(s) 673
BspLI GGNNCC 5 cut(s) 372, 480, 627, 826, 954
BspMAI CTGCAG 1 cut(s) 151
BspPI GGATC 4 cut(s) 223, 476, 819, 832
BspT104I TTCGAA 1 cut(s) 693
BspTNI GGTCTC 3 cut(s) 612, 809, 902
BsrDI GCAATG 2 cut(s) 326, 381
BsrI ACTGG 2 cut(s) 470, 1051
BssMI GATC 7 cut(s) 228, 289, 468, 810, 824, 963, 1027
BssNAI GTATAC 1 cut(s) 923
BssSI CACGAG 1 cut(s) 609
Bst1107I GTATAC 1 cut(s) 923
Bst2BI CACGAG 1 cut(s) 609
Bst4CI ACNGT 3 cut(s) 257, 316, 671
Bst6I CTCTTC 4 cut(s) 454, 612, 877, 963
BstBI TTCGAA 1 cut(s) 693
BstC8I GCNNGC 2 cut(s) 115, 413
BstDEI CTNAG 5 cut(s) 423, 474, 602, 630, 754
BstF5I GGATG 2 cut(s) 41, 182
BstKTI GATC 7 cut(s) 231, 292, 471, 813, 827, 966, 1030
BstMAI GTCTC 3 cut(s) 612, 809, 902
BstMBI GATC 7 cut(s) 228, 289, 468, 810, 824, 963, 1027
BstNSI RCATGY 1 cut(s) 243
BstSCI CCNGG 1 cut(s) 394
BstSFI CTRYAG 1 cut(s) 147
BstV1I GCAGC 1 cut(s) 92
BstX2I RGATCY 2 cut(s) 468, 824
BstYI RGATCY 2 cut(s) 468, 824
BstZ17I GTATAC 1 cut(s) 923
Bsu36I CCTNAGG 1 cut(s) 630
BtgZI GCGATG 1 cut(s) 252
BtsCI GGATG 2 cut(s) 41, 182
BtsIMutI CAGTG 2 cut(s) 463, 1058
Cac8I GCNNGC 2 cut(s) 115, 413
CciI TCATGA 1 cut(s) 673
Cfr13I GGNCC 4 cut(s) 188, 625, 643, 841
CviAII CATG 7 cut(s) 25, 226, 240, 375, 674, 988, 1033
DdeI CTNAG 5 cut(s) 423, 474, 602, 630, 754
DpnI GATC 7 cut(s) 230, 291, 470, 812, 826, 965, 1029
DpnII GATC 7 cut(s) 228, 289, 468, 810, 824, 963, 1027
DraI TTTAAA 1 cut(s) 856
Eam1104I CTCTTC 4 cut(s) 454, 612, 877, 963
EarI CTCTTC 4 cut(s) 454, 612, 877, 963
EciI GGCGGA 1 cut(s) 48
Eco31I GGTCTC 3 cut(s) 612, 809, 902
Eco47I GGWCC 4 cut(s) 188, 625, 643, 841
Eco57I CTGAAG 2 cut(s) 168, 574
Eco81I CCTNAGG 1 cut(s) 630
EcoT22I ATGCAT 1 cut(s) 530
FaeI CATG 7 cut(s) 28, 229, 243, 378, 677, 991, 1036
FalI AAGNNNNNCTT 8 cut(s) 532, 564, 572, 604, 737, 769, 1008, 1040
FaqI GGGAC 3 cut(s) 611, 881, 996
FatI CATG 7 cut(s) 24, 225, 239, 374, 673, 987, 1032
FauI CCCGC 1 cut(s) 910
FauNDI CATATG 1 cut(s) 524
FbaI TGATCA 2 cut(s) 963, 1027
FblI GTMKAC 2 cut(s) 259, 922
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 2 cut(s) 48, 189
Fsp4HI GCNGC 1 cut(s) 81
GluI GCNGC 1 cut(s) 81
GsuI CTGGAG 1 cut(s) 389
HapII CCGG 2 cut(s) 396, 839
Hin1II CATG 7 cut(s) 28, 229, 243, 378, 677, 991, 1036
HincII GTYRAC 2 cut(s) 260, 1077
HindII GTYRAC 2 cut(s) 260, 1077
HindIII AAGCTT 1 cut(s) 334
HinfI GANTC 3 cut(s) 507, 869, 984
HpaII CCGG 2 cut(s) 396, 839
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 3 cut(s) 260, 923, 1077
Hpy188I TCNGA 3 cut(s) 426, 593, 963
Hpy188III TCNNGA 6 cut(s) 186, 232, 482, 674, 814, 1025
Hpy8I GTNNAC 3 cut(s) 260, 923, 1077
HpyAV CCTTC 4 cut(s) 29, 479, 558, 815
HpyCH4III ACNGT 3 cut(s) 257, 316, 671
HpyCH4IV ACGT 1 cut(s) 859
HpyCH4V TGCA 6 cut(s) 113, 149, 386, 463, 528, 614
HpyF3I CTNAG 5 cut(s) 423, 474, 602, 630, 754
HpySE526I ACGT 1 cut(s) 859
Hsp92II CATG 7 cut(s) 28, 229, 243, 378, 677, 991, 1036
Ksp22I TGATCA 2 cut(s) 963, 1027
Kzo9I GATC 7 cut(s) 228, 289, 468, 810, 824, 963, 1027
LmnI GCTCC 6 cut(s) 10, 276, 370, 660, 805, 952
Lsp1109I GCAGC 1 cut(s) 92
LweI GCATC 1 cut(s) 100
MaeII ACGT 1 cut(s) 859
MaeIII GTNAC 2 cut(s) 493, 968
MalI GATC 7 cut(s) 230, 291, 470, 812, 826, 965, 1029
MboI GATC 7 cut(s) 228, 289, 468, 810, 824, 963, 1027
MboII GAAGA 8 cut(s) 174, 284, 365, 441, 629, 864, 950, 1004
MflI RGATCY 2 cut(s) 468, 824
MluCI AATT 4 cut(s) 248, 575, 695, 936
MlyI GAGTC 3 cut(s) 501, 863, 978
Mph1103I ATGCAT 1 cut(s) 530
MroXI GAANNNNTTC 1 cut(s) 587
MseI TTAA 4 cut(s) 309, 558, 579, 855
MslI CAYNNNNRTG 2 cut(s) 27, 224
MspI CCGG 2 cut(s) 396, 839
MspR9I CCNGG 1 cut(s) 396
MssI GTTTAAAC 1 cut(s) 856
Mva1269I GAATGC 1 cut(s) 396
NciI CCSGG 1 cut(s) 396
NdeI CATATG 1 cut(s) 524
NdeII GATC 7 cut(s) 228, 289, 468, 810, 824, 963, 1027
NlaIII CATG 7 cut(s) 28, 229, 243, 378, 677, 991, 1036
NlaIV GGNNCC 5 cut(s) 372, 480, 627, 826, 954
NmuCI GTSAC 1 cut(s) 968
NsiI ATGCAT 1 cut(s) 530
NspI RCATGY 1 cut(s) 243
NspV TTCGAA 1 cut(s) 693
PagI TCATGA 1 cut(s) 673
PciI ACATGT 1 cut(s) 239
PctI GAATGC 1 cut(s) 396
PdmI GAANNNNTTC 1 cut(s) 587
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 3 cut(s) 501, 863, 978
PmeI GTTTAAAC 1 cut(s) 856
PpsI GAGTC 3 cut(s) 501, 863, 978
PscI ACATGT 1 cut(s) 239
PspN4I GGNNCC 5 cut(s) 372, 480, 627, 826, 954
PspPI GGNCC 4 cut(s) 188, 625, 643, 841
PstI CTGCAG 1 cut(s) 151
PsuI RGATCY 2 cut(s) 468, 824
RseI CAYNNNNRTG 2 cut(s) 27, 224
SalI GTCGAC 1 cut(s) 258
SaqAI TTAA 4 cut(s) 309, 558, 579, 855
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 7 cut(s) 228, 289, 468, 810, 824, 963, 1027
Sau96I GGNCC 4 cut(s) 188, 625, 643, 841
SchI GAGTC 3 cut(s) 501, 863, 978
ScrFI CCNGG 1 cut(s) 396
SfaNI GCATC 1 cut(s) 100
SfcI CTRYAG 1 cut(s) 147
SfuI TTCGAA 1 cut(s) 693
SinI GGWCC 4 cut(s) 188, 625, 643, 841
SmiMI CAYNNNNRTG 2 cut(s) 27, 224
Sse9I AATT 4 cut(s) 248, 575, 695, 936
SsiI CCGC 2 cut(s) 33, 917
SspI AATATT 1 cut(s) 769
StyD4I CCNGG 1 cut(s) 394
TaaI ACNGT 3 cut(s) 257, 316, 671
TaiI ACGT 1 cut(s) 862
TaqI TCGA 5 cut(s) 222, 259, 351, 693, 813
TaqII GACCGA 1 cut(s) 833
TasI AATT 4 cut(s) 248, 575, 695, 936
Tru1I TTAA 4 cut(s) 309, 558, 579, 855
Tru9I TTAA 4 cut(s) 309, 558, 579, 855
TscAI CASTG 2 cut(s) 470, 1058
TseFI GTSAC 1 cut(s) 968
TseI GCWGC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 968
TspDTI ATGAA 6 cut(s) 41, 59, 370, 576, 690, 795
TspRI CASTG 2 cut(s) 470, 1058
VpaK11BI GGWCC 4 cut(s) 188, 625, 643, 841
XapI RAATTY 1 cut(s) 695
XceI RCATGY 1 cut(s) 243
XmiI GTMKAC 2 cut(s) 259, 922
XmnI GAANNNNTTC 1 cut(s) 587
Zsp2I ATGCAT 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.