Rmu_sc0013000.1_g000001

SAM dependent carboxyl methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013000.1
Physical Location & Seq
Reverse (-)
13124 .. 13426
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013000.1_g000001.1.cds

Sequence Viewer

Length: 303 bp
atggaggaactgatgaagctgatcgagaccgaaggatcctttaggttgcatgaccatcaagtttttaaacatgattgggactcttttataaaggaagctgatagtggtctcgataagaaagcaagggcgggaatactctccactcacattaggtctgtggtggagcctcttctggtcagtcactttggagagggagtcatggaagatttgtttcgcaggtatgaaaaagatgttcttgatcacatggaaaaggagaagtgccagtctatagatatagttctatcgttgacaaaggagtgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

100

Amino Acids

11.65

Weight (kDa)

5.29

Isoelectric Point (pI)

41.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 89
Acc36I ACCTGC 1 cut(s) 207
AciI CCGC 1 cut(s) 128
AclWI GGATC 2 cut(s) 30, 43
AluBI AGCT 2 cut(s) 19, 98
AluI AGCT 2 cut(s) 19, 98
Alw26I GTCTC 2 cut(s) 20, 113
AlwI GGATC 2 cut(s) 30, 43
BamHI GGATCC 1 cut(s) 35
BccI CCATC 1 cut(s) 63
BclI TGATCA 1 cut(s) 238
BcoDI GTCTC 2 cut(s) 20, 113
BfmI CTRYAG 1 cut(s) 267
BfuAI ACCTGC 1 cut(s) 207
BmiI GGNNCC 2 cut(s) 37, 165
BsaI GGTCTC 2 cut(s) 20, 113
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
Bse1I ACTGG 1 cut(s) 262
BseNI ACTGG 1 cut(s) 262
BslFI GGGAC 1 cut(s) 92
BsmAI GTCTC 2 cut(s) 20, 113
BsmFI GGGAC 1 cut(s) 92
Bso31I GGTCTC 2 cut(s) 20, 113
Bsp143I GATC 3 cut(s) 21, 35, 238
BspACI CCGC 1 cut(s) 128
BspLI GGNNCC 2 cut(s) 37, 165
BspMI ACCTGC 1 cut(s) 207
BspPI GGATC 2 cut(s) 30, 43
BspTNI GGTCTC 2 cut(s) 20, 113
BsrI ACTGG 1 cut(s) 262
BssMI GATC 3 cut(s) 21, 35, 238
Bst6I CTCTTC 1 cut(s) 174
BstKTI GATC 3 cut(s) 24, 38, 241
BstMAI GTCTC 2 cut(s) 20, 113
BstMBI GATC 3 cut(s) 21, 35, 238
BstSFI CTRYAG 1 cut(s) 267
BstX2I RGATCY 1 cut(s) 35
BstYI RGATCY 1 cut(s) 35
BveI ACCTGC 1 cut(s) 207
CviAII CATG 4 cut(s) 50, 71, 199, 244
CviJI RGCY 3 cut(s) 19, 98, 166
CviKI_1 RGCY 3 cut(s) 19, 98, 166
DpnI GATC 3 cut(s) 23, 37, 240
DpnII GATC 3 cut(s) 21, 35, 238
DraI TTTAAA 1 cut(s) 67
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
Eco31I GGTCTC 2 cut(s) 20, 113
FaeI CATG 4 cut(s) 53, 74, 202, 247
FaiI YATR 8 cut(s) 51, 72, 89, 200, 222, 245, 269, 275
FalI AAGNNNNNCTT 2 cut(s) 219, 251
FaqI GGGAC 1 cut(s) 92
FatI CATG 4 cut(s) 49, 70, 198, 243
FauI CCCGC 1 cut(s) 121
FbaI TGATCA 1 cut(s) 238
Hin1II CATG 4 cut(s) 53, 74, 202, 247
HincII GTYRAC 1 cut(s) 288
HindII GTYRAC 1 cut(s) 288
HinfI GANTC 2 cut(s) 80, 195
Hpy166II GTNNAC 1 cut(s) 288
Hpy188III TCNNGA 3 cut(s) 25, 110, 236
Hpy8I GTNNAC 1 cut(s) 288
HpyAV CCTTC 1 cut(s) 26
HpyCH4V TGCA 1 cut(s) 49
Hsp92II CATG 4 cut(s) 53, 74, 202, 247
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 3 cut(s) 21, 35, 238
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 3 cut(s) 158, 202, 275
MaeIII GTNAC 1 cut(s) 179
MalI GATC 3 cut(s) 23, 37, 240
MboI GATC 3 cut(s) 21, 35, 238
MboII GAAGA 2 cut(s) 161, 215
MflI RGATCY 1 cut(s) 35
MlyI GAGTC 2 cut(s) 74, 204
MnlI CCTC 2 cut(s) 177, 184
MseI TTAA 1 cut(s) 66
NdeII GATC 3 cut(s) 21, 35, 238
NlaIII CATG 4 cut(s) 53, 74, 202, 247
NlaIV GGNNCC 2 cut(s) 37, 165
NmuCI GTSAC 1 cut(s) 179
PleI GAGTC 2 cut(s) 74, 203
PpsI GAGTC 2 cut(s) 74, 203
PsiI TTATAA 1 cut(s) 89
PspN4I GGNNCC 2 cut(s) 37, 165
PsuI RGATCY 1 cut(s) 35
SaqAI TTAA 1 cut(s) 66
Sau3AI GATC 3 cut(s) 21, 35, 238
SchI GAGTC 2 cut(s) 74, 204
SetI ASST 5 cut(s) 21, 47, 100, 155, 221
SfcI CTRYAG 1 cut(s) 267
SsiI CCGC 1 cut(s) 128
TaqI TCGA 2 cut(s) 24, 111
TaqII GACCGA 1 cut(s) 44
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TseFI GTSAC 1 cut(s) 179
Tsp45I GTSAC 1 cut(s) 179
TspDTI ATGAA 2 cut(s) 29, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.