Rroxscaffold_159G00432790

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000159
OG0000342
Physical Location & Seq
Reverse (-)
427632 .. 429488
1857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_159G00432790.1

Sequence Viewer

Length: 702 bp
ATGCCGGGTTCTTTCTATGGCAGGCTCTTTCCTAAGAGTTCTATCAACTTTTTTCACTCTTCTTACTCTCTGCACTGGATCTCTAAGGTTCCAAAAGGTTTGGTAACAAAAGGAGGACTCAACGAGGGAAACATATGCACAGCCAAGACAAGCCCACCTTCTGTGTTTAATGAATACTTTGAGCAATTTAAAAAAGACTTCACAGTGTTTCTAAGGTCTCGTGCAGAAGAGTTGGTCCCTCAGGGTAGAATGGTCCTCACAATCAGGGGGAGCATAAACAGTCATGAACCCCTCTCTATATTAGAATTTCTTGGATTGAAAATCAATGATATGGTTTTAGAGGGTTTGATTGAAAAGAAAAACTTAGACTACTTCAATATTCCATACTATGAATCTACAATGGAGGAACTGATGGAGCTGATCGAGACCGAAGGATCCTTTAGGTTGCCGGATCATCAAGTGTTTAAACGTGATTGGGACTCTTCTATAAAGGAAGCTGATAGTGGTCTCGGTAAGAAAGCAAGGGCGGGTATACTTTCCACTCAAATTAGGTCTGTGGTGGAGCCTCTTCTGATCAGTCACTTTGGAGAGGAACTCATGGAAGATTTGTTTCACAGGTTTGAAAAAGATGTTCTTGATCACATGGAAAAGGAGAAGTGCCAGTGTATAGATATAGTTCTATCGTTGACAAAGGAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

233

Amino Acids

26.76

Weight (kDa)

5.46

Isoelectric Point (pI)

42.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 1 - 231 1.4e-74 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 532
AciI CCGC 1 cut(s) 527
AclWI GGATC 4 cut(s) 86, 429, 442, 459
AcsI RAATTY 1 cut(s) 305
AgsI TTSAA 4 cut(s) 319, 353, 376, 623
AluBI AGCT 2 cut(s) 418, 497
AluI AGCT 2 cut(s) 418, 497
Alw26I GTCTC 3 cut(s) 222, 419, 512
AlwI GGATC 4 cut(s) 86, 429, 442, 459
ApoI RAATTY 1 cut(s) 305
AspS9I GGNCC 2 cut(s) 235, 253
AsuC2I CCSGG 1 cut(s) 6
AvaII GGWCC 2 cut(s) 235, 253
AxyI CCTNAGG 1 cut(s) 240
BamHI GGATCC 1 cut(s) 434
BauI CACGAG 1 cut(s) 219
BccI CCATC 1 cut(s) 406
BclI TGATCA 2 cut(s) 573, 637
BcnI CCSGG 1 cut(s) 6
BcoDI GTCTC 3 cut(s) 222, 419, 512
Bme1390I CCNGG 1 cut(s) 6
Bme18I GGWCC 2 cut(s) 235, 253
BmgT120I GGNCC 2 cut(s) 235, 253
BmiI GGNNCC 4 cut(s) 90, 237, 436, 564
BmrFI CCNGG 1 cut(s) 6
BplI GAGNNNNNCTC 2 cut(s) 579, 611
BpuMI CCSGG 1 cut(s) 6
BsaI GGTCTC 3 cut(s) 222, 419, 512
Bse1I ACTGG 2 cut(s) 80, 661
Bse21I CCTNAGG 1 cut(s) 240
BseMII CTCAG 1 cut(s) 254
BseNI ACTGG 2 cut(s) 80, 661
BsgI GTGCAG 2 cut(s) 56, 243
BsiSI CCGG 2 cut(s) 5, 449
BslFI GGGAC 2 cut(s) 221, 491
BsmAI GTCTC 3 cut(s) 222, 419, 512
BsmFI GGGAC 2 cut(s) 221, 491
Bso31I GGTCTC 3 cut(s) 222, 419, 512
Bsp143I GATC 6 cut(s) 78, 420, 434, 451, 573, 637
BspACI CCGC 1 cut(s) 527
BspCNI CTCAG 1 cut(s) 253
BspHI TCATGA 1 cut(s) 283
BspLI GGNNCC 4 cut(s) 90, 237, 436, 564
BspPI GGATC 4 cut(s) 86, 429, 442, 459
BspTNI GGTCTC 3 cut(s) 222, 419, 512
BsrI ACTGG 2 cut(s) 80, 661
BssMI GATC 6 cut(s) 78, 420, 434, 451, 573, 637
BssNAI GTATAC 1 cut(s) 533
BssSI CACGAG 1 cut(s) 219
Bst1107I GTATAC 1 cut(s) 533
Bst2BI CACGAG 1 cut(s) 219
Bst4CI ACNGT 2 cut(s) 205, 281
Bst6I CTCTTC 4 cut(s) 64, 222, 487, 573
BstC8I GCNNGC 1 cut(s) 23
BstDEI CTNAG 5 cut(s) 33, 84, 212, 240, 364
BstKTI GATC 6 cut(s) 81, 423, 437, 454, 576, 640
BstMAI GTCTC 3 cut(s) 222, 419, 512
BstMBI GATC 6 cut(s) 78, 420, 434, 451, 573, 637
BstSCI CCNGG 1 cut(s) 4
BstX2I RGATCY 2 cut(s) 78, 434
BstYI RGATCY 2 cut(s) 78, 434
BstZ17I GTATAC 1 cut(s) 533
Bsu36I CCTNAGG 1 cut(s) 240
BtsIMutI CAGTG 3 cut(s) 73, 210, 668
Cac8I GCNNGC 1 cut(s) 23
CciI TCATGA 1 cut(s) 283
Cfr13I GGNCC 2 cut(s) 235, 253
CviAII CATG 3 cut(s) 284, 598, 643
CviJI RGCY 6 cut(s) 25, 143, 153, 418, 497, 565
CviKI_1 RGCY 6 cut(s) 25, 143, 153, 418, 497, 565
DdeI CTNAG 5 cut(s) 33, 84, 212, 240, 364
DpnI GATC 6 cut(s) 80, 422, 436, 453, 575, 639
DpnII GATC 6 cut(s) 78, 420, 434, 451, 573, 637
DraI TTTAAA 2 cut(s) 190, 466
Eam1104I CTCTTC 4 cut(s) 64, 222, 487, 573
EarI CTCTTC 4 cut(s) 64, 222, 487, 573
Eco31I GGTCTC 3 cut(s) 222, 419, 512
Eco47I GGWCC 2 cut(s) 235, 253
Eco81I CCTNAGG 1 cut(s) 240
FaeI CATG 3 cut(s) 287, 601, 646
FalI AAGNNNNNCTT 6 cut(s) 142, 174, 347, 379, 618, 650
FaqI GGGAC 2 cut(s) 221, 491
FatI CATG 3 cut(s) 283, 597, 642
FauI CCCGC 1 cut(s) 520
FauNDI CATATG 1 cut(s) 134
FbaI TGATCA 2 cut(s) 573, 637
FblI GTMKAC 1 cut(s) 532
HapII CCGG 2 cut(s) 5, 449
Hin1II CATG 3 cut(s) 287, 601, 646
HincII GTYRAC 1 cut(s) 687
HindII GTYRAC 1 cut(s) 687
HinfI GANTC 3 cut(s) 117, 392, 479
HpaII CCGG 2 cut(s) 5, 449
Hpy166II GTNNAC 2 cut(s) 533, 687
Hpy188I TCNGA 1 cut(s) 573
Hpy188III TCNNGA 3 cut(s) 284, 424, 635
Hpy8I GTNNAC 2 cut(s) 533, 687
HpyAV CCTTC 2 cut(s) 168, 425
HpyCH4III ACNGT 2 cut(s) 205, 281
HpyCH4IV ACGT 1 cut(s) 469
HpyCH4V TGCA 3 cut(s) 73, 138, 224
HpyF3I CTNAG 5 cut(s) 33, 84, 212, 240, 364
HpySE526I ACGT 1 cut(s) 469
Hsp92II CATG 3 cut(s) 287, 601, 646
Ksp22I TGATCA 2 cut(s) 573, 637
Kzo9I GATC 6 cut(s) 78, 420, 434, 451, 573, 637
LmnI GCTCC 3 cut(s) 270, 415, 562
LpnPI CCDG 8 cut(s) 7, 18, 61, 227, 250, 462, 601, 674
MaeII ACGT 1 cut(s) 469
MaeIII GTNAC 2 cut(s) 103, 578
MalI GATC 6 cut(s) 80, 422, 436, 453, 575, 639
MboI GATC 6 cut(s) 78, 420, 434, 451, 573, 637
MboII GAAGA 5 cut(s) 51, 239, 474, 560, 614
MflI RGATCY 2 cut(s) 78, 434
MluCI AATT 3 cut(s) 185, 305, 546
MlyI GAGTC 2 cut(s) 111, 473
MseI TTAA 3 cut(s) 168, 189, 465
MspI CCGG 2 cut(s) 5, 449
MspR9I CCNGG 1 cut(s) 6
MssI GTTTAAAC 1 cut(s) 466
NciI CCSGG 1 cut(s) 6
NdeI CATATG 1 cut(s) 134
NdeII GATC 6 cut(s) 78, 420, 434, 451, 573, 637
NlaIII CATG 3 cut(s) 287, 601, 646
NlaIV GGNNCC 4 cut(s) 90, 237, 436, 564
NmuCI GTSAC 1 cut(s) 578
PagI TCATGA 1 cut(s) 283
PfeI GAWTC 1 cut(s) 392
PleI GAGTC 2 cut(s) 111, 473
PmeI GTTTAAAC 1 cut(s) 466
PpsI GAGTC 2 cut(s) 111, 473
PspN4I GGNNCC 4 cut(s) 90, 237, 436, 564
PspPI GGNCC 2 cut(s) 235, 253
PsuI RGATCY 2 cut(s) 78, 434
SaqAI TTAA 3 cut(s) 168, 189, 465
Sau3AI GATC 6 cut(s) 78, 420, 434, 451, 573, 637
Sau96I GGNCC 2 cut(s) 235, 253
SchI GAGTC 2 cut(s) 111, 473
ScrFI CCNGG 1 cut(s) 6
SinI GGWCC 2 cut(s) 235, 253
Sse9I AATT 3 cut(s) 185, 305, 546
SsiI CCGC 1 cut(s) 527
SspI AATATT 1 cut(s) 379
StyD4I CCNGG 1 cut(s) 4
TaaI ACNGT 2 cut(s) 205, 281
TaiI ACGT 1 cut(s) 472
TaqI TCGA 1 cut(s) 423
TaqII GACCGA 1 cut(s) 443
TasI AATT 3 cut(s) 185, 305, 546
TfiI GAWTC 1 cut(s) 392
Tru1I TTAA 3 cut(s) 168, 189, 465
Tru9I TTAA 3 cut(s) 168, 189, 465
TscAI CASTG 3 cut(s) 80, 210, 668
TseFI GTSAC 1 cut(s) 578
Tsp45I GTSAC 1 cut(s) 578
TspDTI ATGAA 3 cut(s) 186, 300, 405
TspRI CASTG 3 cut(s) 80, 210, 668
VpaK11BI GGWCC 2 cut(s) 235, 253
XapI RAATTY 1 cut(s) 305
XmiI GTMKAC 1 cut(s) 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.