Rw1G005230

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000342
Physical Location & Seq
Reverse (-)
10089305 .. 10092366
3062 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G005230.1

Sequence Viewer

Length: 1086 bp
ATGTTTACTCACTTATCTCTCAATTTTGGACCAATAGGTCCATTCCGTCCAACTCCGTCAAAAAGCTCCAGAGCAGTGATTTCATGGGTGAAGCCCATTTTTGATGCAAGCATAGAGAAGCTGTGTTTCGCCAACCTCCCTGCAGAGTGTTTGAGGATAGCTGACTTGGGATGTTCTTCAGGACCAAACACCCTTTTAGTCGTATCAAATGTCATCGACATGATCCAGAATACATGTCAAAAATTGAACCATCGACCTCCATCGCTCCAAGTATTTTTGAATGATCTTCCCCAAAACGACTTTAACACAGTTTTCAAATCATTGCCAAGCTTCTACAACAAACTCGAAGAAAGGAAGTGGTCGGAGCCATGCTTCATTGCAGGAATGCCCGGTTCTTTCTATGGCAGGCTCTTTCCTAAGAATTCTATCAACTTTTTTCACTCATCTTACTCTCTGCAGTGGATCTCTAAGGTTCCAAAAGGTTTGGTAACAAAAGGAGGACTCAACGAGGGAAACATTTGCACAGCCAAGACAAGCCCACCTTCTGTGTTTAATGAATACTTTGAGCAATTTAAAAACGATTTCACAGTGTTTCTAAGGTCTCGTGCAGAAGAGTTGGTCCCTCAGGGTAGAATGGTCCTCACAATCAGGGGGAGCATAAACAGTCATGAACCCCTCTCTATATTAGAATTTCTTGGATTGAAAATCAATGATACGGTTTTAGAGGGATTGATTGAAAAGCAAAACTTAGACTACGTCAATATTCCATACTTTGAACCTACAATGGAGGAACTGATGAAGCTGATCGAGACCGAAGGATCCTTTAGGTTGCATGACCATCAAGTTTTTAAACATGATTGGGACTCTTTTATAAAGGAAGCTGATAGTGGTCTCGATAAGAAAGCAAGGGCGGGAATACTCTCCACTCACATTAGGTCTGTGGTGGAGCCTCTTCTGGTCAGTCACTTTGGAGAGGGAGTCATGGAAGATTTGTTTCGCAGGTATGAAAAAGATGTTCTTGATCACATGGAAAAGGAGAAGTGCCAGTCTATAGATATAGTTCTATCGTTGACAAAGGAGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

361

Amino Acids

41.05

Weight (kDa)

6.09

Isoelectric Point (pI)

46.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 38 - 359 6.3e-115 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 872
AasI GACNNNNNNGTC 1 cut(s) 36
Acc36I ACCTGC 1 cut(s) 990
AciI CCGC 1 cut(s) 911
AclWI GGATC 4 cut(s) 217, 470, 813, 826
AcsI RAATTY 2 cut(s) 421, 689
AcuI CTGAAG 1 cut(s) 162
AflIII ACRYGT 1 cut(s) 233
AgsI TTSAA 6 cut(s) 247, 280, 316, 703, 737, 776
AluBI AGCT 6 cut(s) 66, 121, 161, 330, 802, 881
AluI AGCT 6 cut(s) 66, 121, 161, 330, 802, 881
Alw26I GTCTC 3 cut(s) 606, 803, 896
AlwI GGATC 4 cut(s) 217, 470, 813, 826
ApoI RAATTY 2 cut(s) 421, 689
AspS9I GGNCC 5 cut(s) 29, 38, 182, 619, 637
AsuC2I CCSGG 1 cut(s) 390
AsuHPI GGTGA 1 cut(s) 100
AvaII GGWCC 5 cut(s) 29, 38, 182, 619, 637
AxyI CCTNAGG 1 cut(s) 624
BamHI GGATCC 1 cut(s) 818
BauI CACGAG 1 cut(s) 603
BccI CCATC 3 cut(s) 258, 268, 846
BclI TGATCA 1 cut(s) 1021
BcnI CCSGG 1 cut(s) 390
BcoDI GTCTC 3 cut(s) 606, 803, 896
BfmI CTRYAG 3 cut(s) 141, 455, 1050
BfuAI ACCTGC 1 cut(s) 990
Bme1390I CCNGG 1 cut(s) 390
Bme18I GGWCC 5 cut(s) 29, 38, 182, 619, 637
BmgT120I GGNCC 5 cut(s) 29, 38, 182, 619, 637
BmiI GGNNCC 5 cut(s) 366, 474, 621, 820, 948
BmrFI CCNGG 1 cut(s) 390
BmsI GCATC 1 cut(s) 94
BpmI CTGGAG 1 cut(s) 52
BpuMI CCSGG 1 cut(s) 390
BsaI GGTCTC 3 cut(s) 606, 803, 896
BsaXI ACNNNNNCTCC 2 cut(s) 963, 993
Bse1I ACTGG 1 cut(s) 1045
Bse21I CCTNAGG 1 cut(s) 624
Bse3DI GCAATG 2 cut(s) 320, 375
BseGI GGATG 1 cut(s) 176
BseMI GCAATG 2 cut(s) 320, 375
BseMII CTCAG 1 cut(s) 638
BseNI ACTGG 1 cut(s) 1045
BsgI GTGCAG 1 cut(s) 627
BsiSI CCGG 1 cut(s) 390
BslFI GGGAC 2 cut(s) 605, 875
BsmAI GTCTC 3 cut(s) 606, 803, 896
BsmFI GGGAC 2 cut(s) 605, 875
BsmI GAATGC 1 cut(s) 390
Bso31I GGTCTC 3 cut(s) 606, 803, 896
Bsp143I GATC 6 cut(s) 222, 283, 462, 804, 818, 1021
BspACI CCGC 1 cut(s) 911
BspCNI CTCAG 1 cut(s) 637
BspHI TCATGA 1 cut(s) 667
BspLI GGNNCC 5 cut(s) 366, 474, 621, 820, 948
BspMAI CTGCAG 2 cut(s) 145, 459
BspMI ACCTGC 1 cut(s) 990
BspPI GGATC 4 cut(s) 217, 470, 813, 826
BspTNI GGTCTC 3 cut(s) 606, 803, 896
BsrDI GCAATG 2 cut(s) 320, 375
BsrI ACTGG 1 cut(s) 1045
BssMI GATC 6 cut(s) 222, 283, 462, 804, 818, 1021
BssSI CACGAG 1 cut(s) 603
Bst2BI CACGAG 1 cut(s) 603
Bst4CI ACNGT 4 cut(s) 310, 589, 665, 718
Bst6I CTCTTC 2 cut(s) 606, 957
BstC8I GCNNGC 2 cut(s) 109, 407
BstDEI CTNAG 5 cut(s) 417, 468, 596, 624, 748
BstF5I GGATG 1 cut(s) 176
BstKTI GATC 6 cut(s) 225, 286, 465, 807, 821, 1024
BstMAI GTCTC 3 cut(s) 606, 803, 896
BstMBI GATC 6 cut(s) 222, 283, 462, 804, 818, 1021
BstNSI RCATGY 1 cut(s) 237
BstSCI CCNGG 1 cut(s) 388
BstSFI CTRYAG 3 cut(s) 141, 455, 1050
BstX2I RGATCY 2 cut(s) 462, 818
BstYI RGATCY 2 cut(s) 462, 818
Bsu36I CCTNAGG 1 cut(s) 624
BtgZI GCGATG 1 cut(s) 246
BtsCI GGATG 1 cut(s) 176
BtsI GCAGTG 2 cut(s) 81, 464
BtsIMutI CAGTG 3 cut(s) 81, 464, 594
BveI ACCTGC 1 cut(s) 990
Cac8I GCNNGC 2 cut(s) 109, 407
CciI TCATGA 1 cut(s) 667
Cfr13I GGNCC 5 cut(s) 29, 38, 182, 619, 637
CviAII CATG 9 cut(s) 84, 220, 234, 369, 668, 833, 854, 982, 1027
DdeI CTNAG 5 cut(s) 417, 468, 596, 624, 748
DpnI GATC 6 cut(s) 224, 285, 464, 806, 820, 1023
DpnII GATC 6 cut(s) 222, 283, 462, 804, 818, 1021
DraI TTTAAA 2 cut(s) 574, 850
DrdI GACNNNNNNGTC 1 cut(s) 36
DseDI GACNNNNNNGTC 1 cut(s) 36
Eam1104I CTCTTC 2 cut(s) 606, 957
EarI CTCTTC 2 cut(s) 606, 957
Eco31I GGTCTC 3 cut(s) 606, 803, 896
Eco47I GGWCC 5 cut(s) 29, 38, 182, 619, 637
Eco57I CTGAAG 1 cut(s) 162
Eco81I CCTNAGG 1 cut(s) 624
EcoRI GAATTC 1 cut(s) 421
FaeI CATG 9 cut(s) 87, 223, 237, 372, 671, 836, 857, 985, 1030
FalI AAGNNNNNCTT 6 cut(s) 526, 558, 731, 763, 1002, 1034
FaqI GGGAC 2 cut(s) 605, 875
FatI CATG 9 cut(s) 83, 219, 233, 368, 667, 832, 853, 981, 1026
FauI CCCGC 1 cut(s) 904
FbaI TGATCA 1 cut(s) 1021
FokI GGATG 1 cut(s) 183
GsuI CTGGAG 1 cut(s) 52
HapII CCGG 1 cut(s) 390
Hin1II CATG 9 cut(s) 87, 223, 237, 372, 671, 836, 857, 985, 1030
HincII GTYRAC 1 cut(s) 1071
HindII GTYRAC 1 cut(s) 1071
HindIII AAGCTT 1 cut(s) 328
HinfI GANTC 3 cut(s) 501, 863, 978
HpaII CCGG 1 cut(s) 390
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 2 cut(s) 6, 1071
Hpy188I TCNGA 1 cut(s) 364
Hpy188III TCNNGA 7 cut(s) 69, 180, 226, 668, 808, 893, 1019
Hpy8I GTNNAC 2 cut(s) 6, 1071
HpyAV CCTTC 2 cut(s) 552, 809
HpyCH4III ACNGT 4 cut(s) 310, 589, 665, 718
HpyCH4IV ACGT 1 cut(s) 756
HpyCH4V TGCA 7 cut(s) 107, 143, 380, 457, 522, 608, 832
HpyF3I CTNAG 5 cut(s) 417, 468, 596, 624, 748
HpySE526I ACGT 1 cut(s) 756
Hsp92II CATG 9 cut(s) 87, 223, 237, 372, 671, 836, 857, 985, 1030
Ksp22I TGATCA 1 cut(s) 1021
Kzo9I GATC 6 cut(s) 222, 283, 462, 804, 818, 1021
LmnI GCTCC 5 cut(s) 71, 270, 364, 654, 946
LweI GCATC 1 cut(s) 94
MaeII ACGT 1 cut(s) 756
MaeIII GTNAC 2 cut(s) 487, 962
MalI GATC 6 cut(s) 224, 285, 464, 806, 820, 1023
MboI GATC 6 cut(s) 222, 283, 462, 804, 818, 1021
MboII GAAGA 6 cut(s) 168, 278, 359, 623, 944, 998
MflI RGATCY 2 cut(s) 462, 818
MluCI AATT 5 cut(s) 22, 242, 421, 569, 689
MlyI GAGTC 3 cut(s) 495, 857, 987
MmeI TCCRAC 2 cut(s) 74, 342
MseI TTAA 4 cut(s) 303, 552, 573, 849
MslI CAYNNNNRTG 1 cut(s) 218
MspI CCGG 1 cut(s) 390
MspR9I CCNGG 1 cut(s) 390
Mva1269I GAATGC 1 cut(s) 390
NciI CCSGG 1 cut(s) 390
NdeII GATC 6 cut(s) 222, 283, 462, 804, 818, 1021
NlaIII CATG 9 cut(s) 87, 223, 237, 372, 671, 836, 857, 985, 1030
NlaIV GGNNCC 5 cut(s) 366, 474, 621, 820, 948
NmuCI GTSAC 1 cut(s) 962
NspI RCATGY 1 cut(s) 237
PagI TCATGA 1 cut(s) 667
PciI ACATGT 1 cut(s) 233
PctI GAATGC 1 cut(s) 390
PflFI GACNNNGTC 1 cut(s) 755
PleI GAGTC 3 cut(s) 495, 857, 986
PpsI GAGTC 3 cut(s) 495, 857, 986
PscI ACATGT 1 cut(s) 233
PsiI TTATAA 1 cut(s) 872
PspN4I GGNNCC 5 cut(s) 366, 474, 621, 820, 948
PspPI GGNCC 5 cut(s) 29, 38, 182, 619, 637
PstI CTGCAG 2 cut(s) 145, 459
PsuI RGATCY 2 cut(s) 462, 818
PsyI GACNNNGTC 1 cut(s) 755
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 4 cut(s) 303, 552, 573, 849
Sau3AI GATC 6 cut(s) 222, 283, 462, 804, 818, 1021
Sau96I GGNCC 5 cut(s) 29, 38, 182, 619, 637
SchI GAGTC 3 cut(s) 495, 857, 987
ScrFI CCNGG 1 cut(s) 390
SfaNI GCATC 1 cut(s) 94
SfcI CTRYAG 3 cut(s) 141, 455, 1050
SinI GGWCC 5 cut(s) 29, 38, 182, 619, 637
SmiMI CAYNNNNRTG 1 cut(s) 218
Sse9I AATT 5 cut(s) 22, 242, 421, 569, 689
SsiI CCGC 1 cut(s) 911
SspI AATATT 1 cut(s) 763
StyD4I CCNGG 1 cut(s) 388
TaaI ACNGT 4 cut(s) 310, 589, 665, 718
TaiI ACGT 1 cut(s) 759
TaqI TCGA 5 cut(s) 216, 253, 345, 807, 894
TaqII GACCGA 1 cut(s) 827
TasI AATT 5 cut(s) 22, 242, 421, 569, 689
Tru1I TTAA 4 cut(s) 303, 552, 573, 849
Tru9I TTAA 4 cut(s) 303, 552, 573, 849
TscAI CASTG 3 cut(s) 81, 464, 594
TseFI GTSAC 1 cut(s) 962
Tsp45I GTSAC 1 cut(s) 962
TspDTI ATGAA 6 cut(s) 72, 364, 570, 684, 812, 1020
TspGWI ACGGA 2 cut(s) 35, 45
TspRI CASTG 3 cut(s) 81, 464, 594
Tth111I GACNNNGTC 1 cut(s) 755
VpaK11BI GGWCC 5 cut(s) 29, 38, 182, 619, 637
XapI RAATTY 2 cut(s) 421, 689
XceI RCATGY 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.