Rorug06G0017100

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000342
Physical Location & Seq
Forward (+)
2320388 .. 2323137
2750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0017100.1

Sequence Viewer

Length: 786 bp
ATGAATAGCGAAACCTACGACAGAAGTGAATTTTGTTTCACCATTGTAGCTACAACTGCTTGTGATATGGGTACTCAGACTTTGCTCTTCACGGGAGATTACATAGTAATTACTACAAGTACGTCGGCAGGCTTAGATCAGATTTTACCATGGATGTTTTATCACAAGGTTATTGGAGTTTCCGCCTTTTTTCTTTTTGTGGAAGGAAAGGCTGCGTCTCCTGAAGTATCCAAAGTTCTGGAGTCTATACCTGGAGTAAAATTGATATACAGAACAAAGGAGCTCGAGGAGCAACAAGCTAGAAGGCGAATTTGGAATGAGACATGGCTGTCAAGTTTCTTTTACAAACCATGCAATTATGAGCTATTTGTGAAGCAATCTCTCAATATGGAGATGGCTATTGTTATGGCAAGGGATGCTGGAATGGACTGGATTATTCATCTTGATACTGATGAGTTACTACACCCAGCTGGTGCCAAGGAGTATTCTTTGAGGCAGTTGCTGCTTGATGTGCCTGGGAATGTGGATATGGTTATTTTTTCGAACTATGAGAGCAGTGTTGAACGAGATGATATTAAGGAACCTTTTACCGAGGTATCCATGTTCAAGAAGAATTACGATCATGTACCGAAAGATACATACTTTGGAATGTACAAAGAATCAACTCGTGGCAACCCAAACTACTTTCTGACTTATGGAAATGGGAATCAGCTATTTCATTTTGGTATGGATAAGTTCCTATCAGCCAATATTTTCTTATCAGGTTTATGTTTTGTCAATGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

261

Amino Acids

29.96

Weight (kDa)

5.0

Isoelectric Point (pI)

36.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 328
AccB1I GGYRCC 1 cut(s) 473
AciI CCGC 1 cut(s) 183
AcsI RAATTY 2 cut(s) 29, 309
AcuI CTGAAG 1 cut(s) 243
AfaI GTAC 4 cut(s) 73, 121, 627, 653
AgsI TTSAA 2 cut(s) 563, 607
AjnI CCWGG 2 cut(s) 250, 514
AjuI GAANNNNNNNTTGG 2 cut(s) 295, 327
AluBI AGCT 6 cut(s) 50, 283, 299, 364, 470, 712
AluI AGCT 6 cut(s) 50, 283, 299, 364, 470, 712
Alw21I GWGCWC 1 cut(s) 285
Alw26I GTCTC 2 cut(s) 222, 314
AlwNI CAGNNNCTG 1 cut(s) 502
Ama87I CYCGRG 1 cut(s) 284
ApeKI GCWGC 2 cut(s) 212, 502
ApoI RAATTY 2 cut(s) 29, 309
AsuHPI GGTGA 1 cut(s) 31
AsuII TTCGAA 1 cut(s) 542
AvaI CYCGRG 1 cut(s) 284
BaeI ACNNNNGTAYC 2 cut(s) 579, 612
BanI GGYRCC 1 cut(s) 473
BanII GRGCYC 1 cut(s) 285
BauI CACGAG 1 cut(s) 666
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 2 cut(s) 199, 489
BccI CCATC 1 cut(s) 388
BciT130I CCWGG 2 cut(s) 252, 516
BciVI GTATCC 2 cut(s) 238, 607
BcoDI GTCTC 2 cut(s) 222, 314
BfaI CTAG 1 cut(s) 300
BfuI GTATCC 2 cut(s) 238, 607
BisI GCNGC 2 cut(s) 213, 503
BlsI GCNGC 2 cut(s) 214, 504
Bme1390I CCNGG 2 cut(s) 252, 516
BmeT110I CYCGRG 1 cut(s) 284
BmiI GGNNCC 2 cut(s) 475, 582
BmrFI CCNGG 2 cut(s) 252, 516
BmsI GCATC 1 cut(s) 406
BpmI CTGGAG 2 cut(s) 260, 273
Bpu14I TTCGAA 1 cut(s) 542
BsaJI CCNNGG 4 cut(s) 149, 477, 515, 591
Bse1I ACTGG 1 cut(s) 434
BseBI CCWGG 2 cut(s) 252, 516
BseDI CCNNGG 4 cut(s) 149, 477, 515, 591
BseGI GGATG 2 cut(s) 159, 421
BseMII CTCAG 1 cut(s) 89
BseNI ACTGG 1 cut(s) 434
BseRI GAGGAG 1 cut(s) 302
BseXI GCAGC 2 cut(s) 199, 489
BseYI CCCAGC 1 cut(s) 466
BshNI GGYRCC 1 cut(s) 473
BsiHKAI GWGCWC 1 cut(s) 285
BsiHKCI CYCGRG 1 cut(s) 284
BsmAI GTCTC 2 cut(s) 222, 314
BsmBI CGTCTC 1 cut(s) 222
BsoBI CYCGRG 1 cut(s) 284
Bsp119I TTCGAA 1 cut(s) 542
Bsp1286I GDGCHC 1 cut(s) 285
Bsp1407I TGTACA 1 cut(s) 651
Bsp143I GATC 2 cut(s) 136, 619
Bsp19I CCATGG 1 cut(s) 149
BspACI CCGC 1 cut(s) 183
BspCNI CTCAG 1 cut(s) 88
BspLI GGNNCC 2 cut(s) 475, 582
BspQI GCTCTTC 1 cut(s) 92
BspT104I TTCGAA 1 cut(s) 542
BspT107I GGYRCC 1 cut(s) 473
BsrGI TGTACA 1 cut(s) 651
BsrI ACTGG 1 cut(s) 434
BssECI CCNNGG 4 cut(s) 149, 477, 515, 591
BssMI GATC 2 cut(s) 136, 619
BssSI CACGAG 1 cut(s) 666
BssT1I CCWWGG 2 cut(s) 149, 477
Bst2BI CACGAG 1 cut(s) 666
Bst2UI CCWGG 2 cut(s) 252, 516
Bst6I CTCTTC 1 cut(s) 92
BstAPI GCANNNNNTGC 2 cut(s) 416, 502
BstAUI TGTACA 1 cut(s) 651
BstBI TTCGAA 1 cut(s) 542
BstC8I GCNNGC 1 cut(s) 130
BstDEI CTNAG 2 cut(s) 75, 133
BstDSI CCRYGG 1 cut(s) 149
BstF5I GGATG 2 cut(s) 159, 421
BstKTI GATC 2 cut(s) 139, 622
BstMAI GTCTC 2 cut(s) 222, 314
BstMBI GATC 2 cut(s) 136, 619
BstMWI GCNNNNNNNGC 5 cut(s) 56, 289, 416, 502, 511
BstNI CCWGG 2 cut(s) 252, 516
BstSCI CCNGG 2 cut(s) 250, 514
BstV1I GCAGC 2 cut(s) 199, 489
BstXI CCANNNNNNTGG 1 cut(s) 238
BsuI GTATCC 2 cut(s) 238, 607
BtgI CCRYGG 1 cut(s) 149
BtsCI GGATG 2 cut(s) 159, 421
BtsI GCAGTG 1 cut(s) 562
BtsIMutI CAGTG 1 cut(s) 562
Cac8I GCNNGC 1 cut(s) 130
CaiI CAGNNNCTG 1 cut(s) 502
CseI GACGC 1 cut(s) 204
Csp6I GTAC 4 cut(s) 72, 120, 626, 652
CviAII CATG 5 cut(s) 150, 324, 351, 601, 623
CviQI GTAC 4 cut(s) 72, 120, 626, 652
DdeI CTNAG 2 cut(s) 75, 133
DpnI GATC 2 cut(s) 138, 621
DpnII GATC 2 cut(s) 136, 619
DrdI GACNNNNNNGTC 1 cut(s) 328
DseDI GACNNNNNNGTC 1 cut(s) 328
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
EciI GGCGGA 1 cut(s) 172
Ecl136II GAGCTC 1 cut(s) 283
Eco130I CCWWGG 2 cut(s) 149, 477
Eco24I GRGCYC 1 cut(s) 285
Eco53kI GAGCTC 1 cut(s) 283
Eco57I CTGAAG 1 cut(s) 243
Eco88I CYCGRG 1 cut(s) 284
EcoICRI GAGCTC 1 cut(s) 283
EcoRII CCWGG 2 cut(s) 250, 514
EcoT14I CCWWGG 2 cut(s) 149, 477
EcoT38I GRGCYC 1 cut(s) 285
ErhI CCWWGG 2 cut(s) 149, 477
Esp3I CGTCTC 1 cut(s) 222
FaeI CATG 5 cut(s) 153, 327, 354, 604, 626
FatI CATG 5 cut(s) 149, 323, 350, 600, 622
Fnu4HI GCNGC 2 cut(s) 213, 503
FokI GGATG 2 cut(s) 166, 428
FriOI GRGCYC 1 cut(s) 285
Fsp4HI GCNGC 2 cut(s) 213, 503
FspBI CTAG 1 cut(s) 300
GluI GCNGC 2 cut(s) 213, 503
GsaI CCCAGC 1 cut(s) 470
GsuI CTGGAG 2 cut(s) 260, 273
HgaI GACGC 1 cut(s) 204
Hin1II CATG 5 cut(s) 153, 327, 354, 604, 626
HinfI GANTC 3 cut(s) 242, 659, 706
HphI GGTGA 1 cut(s) 31
Hpy188I TCNGA 3 cut(s) 78, 141, 690
Hpy188III TCNNGA 4 cut(s) 221, 239, 443, 607
Hpy99I CGWCG 1 cut(s) 127
HpyAV CCTTC 2 cut(s) 197, 297
HpyCH4IV ACGT 1 cut(s) 122
HpyCH4V TGCA 1 cut(s) 354
HpyF10VI GCNNNNNNNGC 5 cut(s) 56, 289, 416, 502, 511
HpyF3I CTNAG 2 cut(s) 75, 133
HpySE526I ACGT 1 cut(s) 122
Hsp92II CATG 5 cut(s) 153, 327, 354, 604, 626
Kzo9I GATC 2 cut(s) 136, 619
LguI GCTCTTC 1 cut(s) 92
LmnI GCTCC 2 cut(s) 280, 289
Lsp1109I GCAGC 2 cut(s) 199, 489
LweI GCATC 1 cut(s) 406
MaeI CTAG 1 cut(s) 300
MaeII ACGT 1 cut(s) 122
MaeIII GTNAC 1 cut(s) 456
MalI GATC 2 cut(s) 138, 621
MboI GATC 2 cut(s) 136, 619
MboII GAAGA 2 cut(s) 79, 622
MhlI GDGCHC 1 cut(s) 285
MluCI AATT 6 cut(s) 29, 108, 260, 309, 355, 613
MlyI GAGTC 1 cut(s) 251
MnlI CCTC 3 cut(s) 280, 486, 586
MseI TTAA 1 cut(s) 576
MspA1I CMGCKG 1 cut(s) 470
MspR9I CCNGG 2 cut(s) 252, 516
MvaI CCWGG 2 cut(s) 252, 516
MwoI GCNNNNNNNGC 5 cut(s) 56, 289, 416, 502, 511
NcoI CCATGG 1 cut(s) 149
NdeII GATC 2 cut(s) 136, 619
NlaIII CATG 5 cut(s) 153, 327, 354, 604, 626
NlaIV GGNNCC 2 cut(s) 475, 582
NspV TTCGAA 1 cut(s) 542
PaeR7I CTCGAG 1 cut(s) 284
PciSI GCTCTTC 1 cut(s) 92
PfeI GAWTC 2 cut(s) 659, 706
PkrI GCNGC 2 cut(s) 214, 504
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
Psp124BI GAGCTC 1 cut(s) 285
Psp6I CCWGG 2 cut(s) 250, 514
PspFI CCCAGC 1 cut(s) 466
PspGI CCWGG 2 cut(s) 250, 514
PspN4I GGNNCC 2 cut(s) 475, 582
PspXI VCTCGAGB 1 cut(s) 284
PsrI GAACNNNNNNTAC 2 cut(s) 219, 251
PstNI CAGNNNCTG 1 cut(s) 502
PvuII CAGCTG 1 cut(s) 470
RsaI GTAC 4 cut(s) 73, 121, 627, 653
RsaNI GTAC 4 cut(s) 72, 120, 626, 652
SacI GAGCTC 1 cut(s) 285
SapI GCTCTTC 1 cut(s) 92
SaqAI TTAA 1 cut(s) 576
SatI GCNGC 2 cut(s) 213, 503
Sau3AI GATC 2 cut(s) 136, 619
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 2 cut(s) 252, 516
SduI GDGCHC 1 cut(s) 285
SfaNI GCATC 1 cut(s) 406
Sfr274I CTCGAG 1 cut(s) 284
SfuI TTCGAA 1 cut(s) 542
SlaI CTCGAG 1 cut(s) 284
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 6 cut(s) 29, 108, 260, 309, 355, 613
SsiI CCGC 1 cut(s) 183
SspI AATATT 1 cut(s) 751
SspMI CTAG 1 cut(s) 300
SstI GAGCTC 1 cut(s) 285
StyD4I CCNGG 2 cut(s) 250, 514
StyI CCWWGG 2 cut(s) 149, 477
TaiI ACGT 1 cut(s) 125
TaqI TCGA 2 cut(s) 285, 542
TasI AATT 6 cut(s) 29, 108, 260, 309, 355, 613
TatI WGTACW 1 cut(s) 651
TfiI GAWTC 2 cut(s) 659, 706
Tru1I TTAA 1 cut(s) 576
Tru9I TTAA 1 cut(s) 576
TscAI CASTG 1 cut(s) 562
TseI GCWGC 2 cut(s) 212, 502
TspDTI ATGAA 3 cut(s) 17, 428, 707
TspRI CASTG 1 cut(s) 562
XapI RAATTY 2 cut(s) 29, 309
XhoI CTCGAG 1 cut(s) 284
XspI CTAG 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.