MD10G1071200.v1.1

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000342
Physical Location & Seq
Reverse (-)
9873485 .. 9875528
2044 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1071200.v1.1.491

Sequence Viewer

Length: 1095 bp
ATGGAGGTAGAGCAAGTGCTTCACATGAATGGAGGAATTGGGAAAACAAGCTATGCAACCAACTCTCTACTTCAAAGAGCTGTGATTTCGACGGTGAAGCCCATAGTTAAGGCAAGCATAGAGCAGCTTTGCAGCACACTCTTCTCTGACTGTTTGAAAATAGCAGACTTGGGATGCTCTTCCGGACCCAACACCCTTTTGGCGGTATCAGATATCATACACAACATCCATGCCACCTTCCAAAAACTGAACCGTCCATCTCCTTCACTCCAAGCCTTCTTGAATGATCTTCCTGGGAACGATTTCAACACTGTGTTCAGGTCATTGCCAGGGTTCTACAAGAAACTTGAGGAAGAACAGAAGTTGGGGCCATGTTTCATTACTGCAATGCCTGGTTCTTTCTATGGCAGGCTCTTTCCAAACAATTCTCTCCACTTTGTTCACTCTAATTATGCCCTTATGTGGATCTCTGAGGCTCCGAAAGGTTTGATGACCAAGGAAGGAGAGGGACTAAACAAGAAGAACATATGTATAGCAAAAACAAGCCCATATGCTGTGTATAAGTTGTATTTGGAGCAATTCAAAAAGGACTTTACGGTGTTTTTGAGGTCACGAGCAGAAGAGCTGGTCCCCGGAGGAAGTATGGTCCTAACCACAATGGGCAGCATAAAGAGCCATGACCCACTTTGCATTTGGGAAGTTGTCGGAGTCAAACTCAATGATATGGTTTTAGAGGGTTTGATTGAGAAGGAAAAACTGGAGATCTTCAATCTGCCATATTATGCACCAACAACAAAGGAGGTTGAAGATGTAATCGAGGCTGAAGGATCTTTTACTTTGCAAAGCCTTGAAGTTTTCAAAAATGATTGGGACTCTTATATAAAGCATGCTGACAGTGGCCTTGATAGAAAGGCAAGGGCTGCCGTACTTGCCACTGATATAAGGGCTGTGGGAGAGCCTATTCTGGCAACCCAATTCGGAGAAGCAGCTATGGACGATTTGTTTCACCGGTTCGAAGAAGATGTCCTTGATCACATGGAAATGGAGAATTGCCAGTACATTAACCTGGTTATCTCGTTGACAAAGAAGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

365

Amino Acids

40.75

Weight (kDa)

5.56

Isoelectric Point (pI)

41.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 40 - 362 5.7e-121 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 182
AciI CCGC 1 cut(s) 203
AclWI GGATC 2 cut(s) 473, 835
AcuI CTGAAG 1 cut(s) 843
AfaI GTAC 2 cut(s) 927, 1058
AfiI CCNNNNNNNGG 2 cut(s) 202, 462
AgeI ACCGGT 1 cut(s) 1008
AgsI TTSAA 9 cut(s) 74, 157, 283, 307, 583, 769, 806, 851, 859
AjnI CCWGG 4 cut(s) 292, 328, 391, 1065
AluBI AGCT 5 cut(s) 51, 80, 127, 625, 989
AluI AGCT 5 cut(s) 51, 80, 127, 625, 989
AlwI GGATC 2 cut(s) 473, 835
Aor13HI TCCGGA 1 cut(s) 182
AoxI GGCC 2 cut(s) 368, 898
ApeKI GCWGC 5 cut(s) 124, 132, 663, 920, 986
ArsI GACNNNNNNTTYG 2 cut(s) 1008, 1040
AsiGI ACCGGT 1 cut(s) 1008
Asp700I GAANNNNTTC 1 cut(s) 302
AspS9I GGNCC 4 cut(s) 185, 368, 628, 646
AsuC2I CCSGG 1 cut(s) 633
AsuHPI GGTGA 2 cut(s) 106, 998
AsuII TTCGAA 1 cut(s) 1014
AvaII GGWCC 3 cut(s) 185, 628, 646
BauI CACGAG 1 cut(s) 612
BbvI GCAGC 5 cut(s) 136, 144, 675, 907, 998
BccI CCATC 1 cut(s) 265
BceAI ACGGC 1 cut(s) 908
BciT130I CCWGG 4 cut(s) 294, 330, 393, 1067
BclI TGATCA 1 cut(s) 1030
BcnI CCSGG 1 cut(s) 633
BglII AGATCT 1 cut(s) 762
BisI GCNGC 5 cut(s) 125, 133, 664, 921, 987
BlsI GCNGC 5 cut(s) 126, 134, 665, 922, 988
Bme1390I CCNGG 5 cut(s) 294, 330, 393, 633, 1067
Bme18I GGWCC 3 cut(s) 185, 628, 646
BmgT120I GGNCC 4 cut(s) 185, 368, 628, 646
BmiI GGNNCC 4 cut(s) 187, 369, 477, 630
BmrFI CCNGG 5 cut(s) 294, 330, 393, 633, 1067
BmsI GCATC 1 cut(s) 164
BplI GAGNNNNNCTC 2 cut(s) 699, 731
BpmI CTGGAG 1 cut(s) 779
Bpu14I TTCGAA 1 cut(s) 1014
BpuEI CTTGAG 1 cut(s) 368
BpuMI CCSGG 1 cut(s) 633
BsaJI CCNNGG 4 cut(s) 293, 329, 495, 631
BsaWI WCCGGW 2 cut(s) 182, 1008
Bsc4I CCNNNNNNNGG 2 cut(s) 202, 462
Bse118I RCCGGY 1 cut(s) 1008
Bse1I ACTGG 2 cut(s) 762, 1054
Bse3DI GCAATG 2 cut(s) 323, 393
BseAI TCCGGA 1 cut(s) 182
BseBI CCWGG 4 cut(s) 294, 330, 393, 1067
BseDI CCNNGG 4 cut(s) 293, 329, 495, 631
BseGI GGATG 2 cut(s) 179, 225
BseLI CCNNNNNNNGG 2 cut(s) 202, 462
BseMI GCAATG 2 cut(s) 323, 393
BseMII CTCAG 1 cut(s) 462
BseNI ACTGG 2 cut(s) 762, 1054
BseXI GCAGC 5 cut(s) 136, 144, 675, 907, 998
BshFI GGCC 2 cut(s) 370, 900
BshTI ACCGGT 1 cut(s) 1008
BsiSI CCGG 3 cut(s) 183, 633, 1009
BslFI GGGAC 3 cut(s) 522, 614, 884
BslI CCNNNNNNNGG 2 cut(s) 202, 462
BsmFI GGGAC 3 cut(s) 522, 614, 884
BsnI GGCC 2 cut(s) 370, 900
Bsp119I TTCGAA 1 cut(s) 1014
Bsp13I TCCGGA 1 cut(s) 182
Bsp143I GATC 5 cut(s) 286, 465, 762, 827, 1030
BspACI CCGC 1 cut(s) 203
BspANI GGCC 2 cut(s) 370, 900
BspCNI CTCAG 1 cut(s) 463
BspEI TCCGGA 1 cut(s) 182
BspLI GGNNCC 4 cut(s) 187, 369, 477, 630
BspPI GGATC 2 cut(s) 473, 835
BspQI GCTCTTC 2 cut(s) 184, 615
BspT104I TTCGAA 1 cut(s) 1014
BsrDI GCAATG 2 cut(s) 323, 393
BsrFI RCCGGY 1 cut(s) 1008
BsrI ACTGG 2 cut(s) 762, 1054
BssAI RCCGGY 1 cut(s) 1008
BssECI CCNNGG 4 cut(s) 293, 329, 495, 631
BssMI GATC 5 cut(s) 286, 465, 762, 827, 1030
BssSI CACGAG 1 cut(s) 612
BssT1I CCWWGG 1 cut(s) 495
Bst2BI CACGAG 1 cut(s) 612
Bst2UI CCWGG 4 cut(s) 294, 330, 393, 1067
Bst4CI ACNGT 6 cut(s) 94, 152, 254, 313, 598, 896
Bst6I CTCTTC 3 cut(s) 146, 184, 615
BstAPI GCANNNNNTGC 1 cut(s) 920
BstBI TTCGAA 1 cut(s) 1014
BstC8I GCNNGC 3 cut(s) 115, 410, 888
BstDEI CTNAG 1 cut(s) 471
BstF5I GGATG 2 cut(s) 179, 225
BstKTI GATC 5 cut(s) 289, 468, 765, 830, 1033
BstMBI GATC 5 cut(s) 286, 465, 762, 827, 1030
BstMWI GCNNNNNNNGC 3 cut(s) 672, 920, 929
BstNI CCWGG 4 cut(s) 294, 330, 393, 1067
BstNSI RCATGY 1 cut(s) 890
BstSCI CCNGG 5 cut(s) 292, 328, 391, 631, 1065
BstV1I GCAGC 5 cut(s) 136, 144, 675, 907, 998
BstX2I RGATCY 3 cut(s) 465, 762, 827
BstYI RGATCY 3 cut(s) 465, 762, 827
BsuRI GGCC 2 cut(s) 370, 900
BtsCI GGATG 2 cut(s) 179, 225
BtsIMutI CAGTG 3 cut(s) 309, 901, 933
Cac8I GCNNGC 3 cut(s) 115, 410, 888
Cfr10I RCCGGY 1 cut(s) 1008
Cfr13I GGNCC 4 cut(s) 185, 368, 628, 646
CsiI ACCWGGT 1 cut(s) 1065
Csp6I GTAC 2 cut(s) 926, 1057
CspAI ACCGGT 1 cut(s) 1008
CviAII CATG 6 cut(s) 25, 230, 372, 677, 887, 1036
CviQI GTAC 2 cut(s) 926, 1057
DdeI CTNAG 1 cut(s) 471
DpnI GATC 5 cut(s) 288, 467, 764, 829, 1032
DpnII GATC 5 cut(s) 286, 465, 762, 827, 1030
Eam1104I CTCTTC 3 cut(s) 146, 184, 615
EarI CTCTTC 3 cut(s) 146, 184, 615
Eco130I CCWWGG 1 cut(s) 495
Eco32I GATATC 1 cut(s) 214
Eco47I GGWCC 3 cut(s) 185, 628, 646
Eco57I CTGAAG 1 cut(s) 843
EcoRII CCWGG 4 cut(s) 292, 328, 391, 1065
EcoRV GATATC 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 495
ErhI CCWWGG 1 cut(s) 495
FaeI CATG 6 cut(s) 28, 233, 375, 680, 890, 1039
FalI AAGNNNNNCTT 2 cut(s) 1011, 1043
FaqI GGGAC 3 cut(s) 522, 614, 884
FatI CATG 6 cut(s) 24, 229, 371, 676, 886, 1035
FauNDI CATATG 2 cut(s) 527, 550
FbaI TGATCA 1 cut(s) 1030
Fnu4HI GCNGC 5 cut(s) 125, 133, 664, 921, 987
FokI GGATG 2 cut(s) 186, 212
Fsp4HI GCNGC 5 cut(s) 125, 133, 664, 921, 987
GluI GCNGC 5 cut(s) 125, 133, 664, 921, 987
GsuI CTGGAG 1 cut(s) 779
HaeIII GGCC 2 cut(s) 370, 900
HapII CCGG 3 cut(s) 183, 633, 1009
Hin1II CATG 6 cut(s) 28, 233, 375, 680, 890, 1039
HincII GTYRAC 1 cut(s) 1080
HindII GTYRAC 1 cut(s) 1080
HinfI GANTC 2 cut(s) 708, 872
HpaII CCGG 3 cut(s) 183, 633, 1009
HphI GGTGA 2 cut(s) 106, 998
Hpy166II GTNNAC 2 cut(s) 442, 1080
Hpy188I TCNGA 6 cut(s) 148, 211, 472, 480, 707, 980
Hpy188III TCNNGA 3 cut(s) 183, 280, 612
Hpy8I GTNNAC 2 cut(s) 442, 1080
Hpy99I CGWCG 1 cut(s) 94
HpyAV CCTTC 6 cut(s) 247, 273, 286, 494, 742, 818
HpyCH4III ACNGT 6 cut(s) 94, 152, 254, 313, 598, 896
HpyCH4V TGCA 6 cut(s) 56, 132, 386, 690, 785, 841
HpyF10VI GCNNNNNNNGC 3 cut(s) 672, 920, 929
HpyF3I CTNAG 1 cut(s) 471
Hsp92II CATG 6 cut(s) 28, 233, 375, 680, 890, 1039
Kpn2I TCCGGA 1 cut(s) 182
Ksp22I TGATCA 1 cut(s) 1030
Kzo9I GATC 5 cut(s) 286, 465, 762, 827, 1030
LguI GCTCTTC 2 cut(s) 184, 615
LmnI GCTCC 2 cut(s) 481, 574
Lsp1109I GCAGC 5 cut(s) 136, 144, 675, 907, 998
LweI GCATC 1 cut(s) 164
MabI ACCWGGT 1 cut(s) 1065
MaeIII GTNAC 1 cut(s) 609
MalI GATC 5 cut(s) 288, 467, 764, 829, 1032
MboI GATC 5 cut(s) 286, 465, 762, 827, 1030
MflI RGATCY 3 cut(s) 465, 762, 827
MluCI AATT 6 cut(s) 36, 424, 448, 578, 974, 1048
MlyI GAGTC 2 cut(s) 717, 866
MmeI TCCRAC 1 cut(s) 685
MnlI CCTC 9 cut(s) 26, 343, 466, 499, 600, 629, 727, 793, 811
MroI TCCGGA 1 cut(s) 182
MroXI GAANNNNTTC 1 cut(s) 302
MseI TTAA 2 cut(s) 108, 1062
MslI CAYNNNNRTG 2 cut(s) 27, 1040
MspI CCGG 3 cut(s) 183, 633, 1009
MspR9I CCNGG 5 cut(s) 294, 330, 393, 633, 1067
MvaI CCWGG 4 cut(s) 294, 330, 393, 1067
MwoI GCNNNNNNNGC 3 cut(s) 672, 920, 929
NciI CCSGG 1 cut(s) 633
NdeI CATATG 2 cut(s) 527, 550
NdeII GATC 5 cut(s) 286, 465, 762, 827, 1030
NlaIII CATG 6 cut(s) 28, 233, 375, 680, 890, 1039
NlaIV GGNNCC 4 cut(s) 187, 369, 477, 630
NmuCI GTSAC 1 cut(s) 609
NspI RCATGY 1 cut(s) 890
NspV TTCGAA 1 cut(s) 1014
PaeI GCATGC 1 cut(s) 890
PciSI GCTCTTC 2 cut(s) 184, 615
PdmI GAANNNNTTC 1 cut(s) 302
PinAI ACCGGT 1 cut(s) 1008
PkrI GCNGC 5 cut(s) 126, 134, 665, 922, 988
PleI GAGTC 2 cut(s) 716, 866
PpsI GAGTC 2 cut(s) 716, 866
Psp6I CCWGG 4 cut(s) 292, 328, 391, 1065
PspGI CCWGG 4 cut(s) 292, 328, 391, 1065
PspN4I GGNNCC 4 cut(s) 187, 369, 477, 630
PspPI GGNCC 4 cut(s) 185, 368, 628, 646
PsuI RGATCY 3 cut(s) 465, 762, 827
RsaI GTAC 2 cut(s) 927, 1058
RsaNI GTAC 2 cut(s) 926, 1057
RseI CAYNNNNRTG 2 cut(s) 27, 1040
SapI GCTCTTC 2 cut(s) 184, 615
SaqAI TTAA 2 cut(s) 108, 1062
SatI GCNGC 5 cut(s) 125, 133, 664, 921, 987
Sau3AI GATC 5 cut(s) 286, 465, 762, 827, 1030
Sau96I GGNCC 4 cut(s) 185, 368, 628, 646
SchI GAGTC 2 cut(s) 717, 866
ScrFI CCNGG 5 cut(s) 294, 330, 393, 633, 1067
SexAI ACCWGGT 1 cut(s) 1065
SfaNI GCATC 1 cut(s) 164
SfuI TTCGAA 1 cut(s) 1014
SinI GGWCC 3 cut(s) 185, 628, 646
SmiMI CAYNNNNRTG 2 cut(s) 27, 1040
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
SphI GCATGC 1 cut(s) 890
Sse9I AATT 6 cut(s) 36, 424, 448, 578, 974, 1048
SsiI CCGC 1 cut(s) 203
StyD4I CCNGG 5 cut(s) 292, 328, 391, 631, 1065
StyI CCWWGG 1 cut(s) 495
TaaI ACNGT 6 cut(s) 94, 152, 254, 313, 598, 896
TaqI TCGA 3 cut(s) 89, 816, 1014
TasI AATT 6 cut(s) 36, 424, 448, 578, 974, 1048
TatI WGTACW 1 cut(s) 1056
Tru1I TTAA 2 cut(s) 108, 1062
Tru9I TTAA 2 cut(s) 108, 1062
TscAI CASTG 3 cut(s) 316, 901, 940
TseFI GTSAC 1 cut(s) 609
TseI GCWGC 5 cut(s) 124, 132, 663, 920, 986
Tsp45I GTSAC 1 cut(s) 609
TspDTI ATGAA 2 cut(s) 41, 367
TspRI CASTG 3 cut(s) 316, 901, 940
VpaK11BI GGWCC 3 cut(s) 185, 628, 646
XceI RCATGY 1 cut(s) 890
XcmI CCANNNNNNNNNTGG 2 cut(s) 196, 690
XmnI GAANNNNTTC 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.