AT5G38020

carboxyl

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000342
Physical Location & Seq
Reverse (-)
15165642 .. 15167864
2223 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G38020.2

Sequence Viewer

Length: 1107 bp
ATGGGTGTTCTAAGCATGAAGGGAGGAGATGGAGAACACAGTTATGCTAATAATTCCGAGGGACAGAAACGTCTTGCTTCTGATGCAAAACCGGTGGTGGTAGAAACCGTAAAAGAAATGATAGTGAAAACAGATTTTCCTGGTTGTATAAAAGTGGCCGACTTAGGATGTTCTTCCGGGGAAAACACGTTATTGGTCATGTCCGAAATAGTCAACACGATCATTACATCATACCAACAAAAAGGCAAAAACTTACCAGAGATCAATTGTTGTTTGAACGATCTCCCAGACAACGATTTCAACACTACTTTCAAGTTGGTCCCTGCCTTCCACAAGTTGCTGAAGATGGATGTTAAAGGGAAATGCTTCATCTCAGGAGTCCCAGGCTCATTCTACTCAAGACTTTTCCCTAGCAAGTCTCTCCATTTTGTTCATTCATCTCTTTGTCTACATTGGCTTTCCAAAGTTCCTGATGGGCTTGAAGATAACAAGAAGAATGTGTACCTTAGAAGTCCATGCCCTCCAAATGTGTACAAGAGTTATTTGACTCAGTTCAAGAATGATTTCTCTTTGTTTCTGAGACTGCGTGCGGATGAGACTGTGCCAAATGGACGTATGGCTCTTACTTTCGTGGGCAGAAAATCTTTGGATCCTTTATCTAAAGATTGTTTCCAAAATTGGTCGTCGATATCTGATTCCCTCCTCGACTTGGTTTCTGAGGGTATTGTGAAGGAATCGGATGTAGATTCTTTTAACTTGCCATTCTACAATCCTGACGAGAGTGAGGTGAGGGAAGTTATCGAAAGCGAGGGCTCGTTCAAAATCAGCAATTTTGAGACAATCTTTGGTCTTCTCTTTTCATACAAAACTGGTCGTACTGAAGTGAAAGATGATGATGATAATTTGGACCAATCATGTCGATTTGAAGTCATTCGAAAGAGGGCAAGCATCATAAGATCCATTACTGAACCAATGCTTGGTGCTCATTTTGGAGACGCCATTATGGATCGTCTGTTCGAGAGGTATACATACCATCTTGCCGAGCGTTACGATACTTTGCGCAACAAACCAACTGTTCAGTTCTTCGTTTCCTTGACAAGGAAGTAA

Protein Analysis

368

Amino Acids

41.64

Weight (kDa)

6.21

Isoelectric Point (pI)

35.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 2 - 328 5.7e-118 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 69
Acc16I TGCGCA 1 cut(s) 1061
AccB7I CCANNNNNTGG 1 cut(s) 977
AccI GTMKAC 2 cut(s) 448, 1025
AciI CCGC 1 cut(s) 590
AclWI GGATC 4 cut(s) 644, 657, 951, 1014
AcoI YGGCCR 1 cut(s) 156
AcuI CTGAAG 2 cut(s) 362, 900
AcyI GRCGYC 1 cut(s) 996
AfaI GTAC 3 cut(s) 503, 533, 877
AfiI CCNNNNNNNGG 3 cut(s) 709, 977, 1098
AflIII ACRYGT 1 cut(s) 186
AgeI ACCGGT 1 cut(s) 91
AgsI TTSAA 7 cut(s) 277, 301, 313, 482, 556, 820, 926
AjnI CCWGG 2 cut(s) 139, 382
AjuI GAANNNNNNNTTGG 2 cut(s) 960, 992
AloI GAACNNNNNNTCC 2 cut(s) 998, 1030
Alw21I GWGCWC 1 cut(s) 985
Alw26I GTCTC 5 cut(s) 423, 574, 590, 830, 987
AlwI GGATC 4 cut(s) 644, 657, 951, 1014
AoxI GGCC 1 cut(s) 156
AsiGI ACCGGT 1 cut(s) 91
Asp700I GAANNNNTTC 3 cut(s) 365, 563, 930
AspLEI GCGC 1 cut(s) 1062
AspS9I GGNCC 2 cut(s) 319, 907
AsuC2I CCSGG 1 cut(s) 178
AsuHPI GGTGA 1 cut(s) 799
AsuII TTCGAA 1 cut(s) 934
AvaII GGWCC 2 cut(s) 319, 907
BamHI GGATCC 1 cut(s) 649
BanII GRGCYC 1 cut(s) 815
BarI GAAGNNNNNNTAC 2 cut(s) 485, 517
BbsI GAAGAC 1 cut(s) 842
Bbv12I GWGCWC 1 cut(s) 985
BccI CCATC 4 cut(s) 23, 340, 467, 1041
BciT130I CCWGG 2 cut(s) 141, 384
BcnI CCSGG 1 cut(s) 178
BcoDI GTCTC 5 cut(s) 423, 574, 590, 830, 987
BfaI CTAG 1 cut(s) 411
Bme1390I CCNGG 3 cut(s) 141, 178, 384
Bme18I GGWCC 2 cut(s) 319, 907
BmgT120I GGNCC 2 cut(s) 319, 907
BmiI GGNNCC 2 cut(s) 321, 651
BmrFI CCNGG 3 cut(s) 141, 178, 384
BmsI GCATC 2 cut(s) 73, 957
BpiI GAAGAC 1 cut(s) 842
Bpu14I TTCGAA 1 cut(s) 934
BpuEI CTTGAG 1 cut(s) 382
BpuMI CCSGG 1 cut(s) 178
BsaHI GRCGYC 1 cut(s) 996
BsaJI CCNNGG 3 cut(s) 57, 177, 382
BsaWI WCCGGW 1 cut(s) 91
Bsc4I CCNNNNNNNGG 3 cut(s) 709, 977, 1098
Bse118I RCCGGY 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 874
BseBI CCWGG 2 cut(s) 141, 384
BseDI CCNNGG 3 cut(s) 57, 177, 382
BseGI GGATG 4 cut(s) 173, 355, 598, 745
BseLI CCNNNNNNNGG 3 cut(s) 709, 977, 1098
BseMII CTCAG 4 cut(s) 387, 563, 569, 708
BseNI ACTGG 1 cut(s) 874
BseRI GAGGAG 2 cut(s) 39, 692
BshFI GGCC 1 cut(s) 158
BshTI ACCGGT 1 cut(s) 91
BsiHKAI GWGCWC 1 cut(s) 985
BsiSI CCGG 2 cut(s) 92, 177
BslFI GGGAC 3 cut(s) 75, 305, 365
BslI CCNNNNNNNGG 3 cut(s) 709, 977, 1098
BsmAI GTCTC 5 cut(s) 423, 574, 590, 830, 987
BsmBI CGTCTC 1 cut(s) 987
BsmFI GGGAC 3 cut(s) 75, 305, 365
BsnI GGCC 1 cut(s) 158
Bsp119I TTCGAA 1 cut(s) 934
Bsp1286I GDGCHC 2 cut(s) 815, 985
Bsp1407I TGTACA 1 cut(s) 531
Bsp143I GATC 6 cut(s) 219, 261, 280, 649, 956, 1006
BspACI CCGC 1 cut(s) 590
BspANI GGCC 1 cut(s) 158
BspCNI CTCAG 4 cut(s) 386, 562, 570, 709
BspLI GGNNCC 2 cut(s) 321, 651
BspPI GGATC 4 cut(s) 644, 657, 951, 1014
BspT104I TTCGAA 1 cut(s) 934
BsrFI RCCGGY 1 cut(s) 91
BsrGI TGTACA 1 cut(s) 531
BsrI ACTGG 1 cut(s) 874
BssAI RCCGGY 1 cut(s) 91
BssECI CCNNGG 3 cut(s) 57, 177, 382
BssMI GATC 6 cut(s) 219, 261, 280, 649, 956, 1006
BssNAI GTATAC 1 cut(s) 1026
BssNI GRCGYC 1 cut(s) 996
Bst1107I GTATAC 1 cut(s) 1026
Bst2UI CCWGG 2 cut(s) 141, 384
Bst4CI ACNGT 4 cut(s) 41, 109, 601, 1075
BstACI GRCGYC 1 cut(s) 996
BstAUI TGTACA 1 cut(s) 531
BstBI TTCGAA 1 cut(s) 934
BstC8I GCNNGC 2 cut(s) 588, 946
BstDEI CTNAG 7 cut(s) 11, 163, 373, 506, 549, 578, 717
BstENI CCTNNNNNAGG 1 cut(s) 1096
BstF5I GGATG 4 cut(s) 173, 355, 598, 745
BstHHI GCGC 1 cut(s) 1062
BstKTI GATC 6 cut(s) 222, 264, 283, 652, 959, 1009
BstMAI GTCTC 5 cut(s) 423, 574, 590, 830, 987
BstMBI GATC 6 cut(s) 219, 261, 280, 649, 956, 1006
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstNI CCWGG 2 cut(s) 141, 384
BstSCI CCNGG 3 cut(s) 139, 176, 382
BstV2I GAAGAC 1 cut(s) 842
BstX2I RGATCY 2 cut(s) 649, 956
BstYI RGATCY 2 cut(s) 649, 956
BstZ17I GTATAC 1 cut(s) 1026
BsuRI GGCC 1 cut(s) 158
BtsCI GGATG 4 cut(s) 173, 355, 598, 745
Cac8I GCNNGC 2 cut(s) 588, 946
CfoI GCGC 1 cut(s) 1062
Cfr10I RCCGGY 1 cut(s) 91
Cfr13I GGNCC 2 cut(s) 319, 907
CseI GACGC 1 cut(s) 1004
Csp6I GTAC 3 cut(s) 502, 532, 876
CspAI ACCGGT 1 cut(s) 91
CspCI CAANNNNNGTGG 2 cut(s) 75, 110
CviAII CATG 4 cut(s) 16, 199, 516, 915
CviJI RGCY 6 cut(s) 158, 387, 457, 478, 620, 813
CviKI_1 RGCY 6 cut(s) 158, 387, 457, 478, 620, 813
CviQI GTAC 3 cut(s) 502, 532, 876
DdeI CTNAG 7 cut(s) 11, 163, 373, 506, 549, 578, 717
DpnI GATC 6 cut(s) 221, 263, 282, 651, 958, 1008
DpnII GATC 6 cut(s) 219, 261, 280, 649, 956, 1006
DrdI GACNNNNNNGTC 1 cut(s) 69
DseDI GACNNNNNNGTC 1 cut(s) 69
EaeI YGGCCR 1 cut(s) 156
Eco24I GRGCYC 1 cut(s) 815
Eco32I GATATC 1 cut(s) 690
Eco47I GGWCC 2 cut(s) 319, 907
Eco57I CTGAAG 2 cut(s) 362, 900
EcoNI CCTNNNNNAGG 1 cut(s) 1096
EcoRII CCWGG 2 cut(s) 139, 382
EcoRV GATATC 1 cut(s) 690
EcoT38I GRGCYC 1 cut(s) 815
Esp3I CGTCTC 1 cut(s) 987
FaeI CATG 4 cut(s) 19, 202, 519, 918
FaqI GGGAC 3 cut(s) 75, 305, 365
FatI CATG 4 cut(s) 15, 198, 515, 914
FblI GTMKAC 2 cut(s) 448, 1025
FokI GGATG 4 cut(s) 180, 362, 605, 752
FriOI GRGCYC 1 cut(s) 815
FspBI CTAG 1 cut(s) 411
FspI TGCGCA 1 cut(s) 1061
GlaI GCGC 1 cut(s) 1061
HaeIII GGCC 1 cut(s) 158
HapII CCGG 2 cut(s) 92, 177
HgaI GACGC 1 cut(s) 1004
HhaI GCGC 1 cut(s) 1062
Hin1I GRCGYC 1 cut(s) 996
Hin1II CATG 4 cut(s) 19, 202, 519, 918
Hin6I GCGC 1 cut(s) 1060
HinP1I GCGC 1 cut(s) 1060
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HinfI GANTC 5 cut(s) 378, 547, 695, 734, 746
HpaII CCGG 2 cut(s) 92, 177
HphI GGTGA 1 cut(s) 799
Hpy166II GTNNAC 5 cut(s) 214, 449, 502, 532, 1026
Hpy188I TCNGA 7 cut(s) 58, 82, 205, 579, 694, 718, 739
Hpy188III TCNNGA 6 cut(s) 375, 399, 470, 556, 773, 1018
Hpy8I GTNNAC 5 cut(s) 214, 449, 502, 532, 1026
Hpy99I CGWCG 1 cut(s) 688
HpyAV CCTTC 3 cut(s) 13, 337, 724
HpyCH4III ACNGT 4 cut(s) 41, 109, 601, 1075
HpyCH4IV ACGT 3 cut(s) 70, 188, 613
HpyCH4V TGCA 1 cut(s) 86
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 7 cut(s) 11, 163, 373, 506, 549, 578, 717
HpySE526I ACGT 3 cut(s) 70, 188, 613
Hsp92I GRCGYC 1 cut(s) 996
Hsp92II CATG 4 cut(s) 19, 202, 519, 918
HspAI GCGC 1 cut(s) 1060
Kzo9I GATC 6 cut(s) 219, 261, 280, 649, 956, 1006
LweI GCATC 2 cut(s) 73, 957
MaeI CTAG 1 cut(s) 411
MaeII ACGT 3 cut(s) 70, 188, 613
MaeIII GTNAC 1 cut(s) 1046
MalI GATC 6 cut(s) 221, 263, 282, 651, 958, 1008
MboI GATC 6 cut(s) 219, 261, 280, 649, 956, 1006
MboII GAAGA 6 cut(s) 165, 355, 494, 505, 842, 1075
MfeI CAATTG 1 cut(s) 265
MflI RGATCY 2 cut(s) 649, 956
MhlI GDGCHC 2 cut(s) 815, 985
MluCI AATT 5 cut(s) 52, 265, 676, 829, 901
MlyI GAGTC 2 cut(s) 387, 541
MroXI GAANNNNTTC 3 cut(s) 365, 563, 930
MseI TTAA 2 cut(s) 354, 753
MslI CAYNNNNRTG 1 cut(s) 42
MspI CCGG 2 cut(s) 92, 177
MspR9I CCNGG 3 cut(s) 141, 178, 384
MunI CAATTG 1 cut(s) 265
MvaI CCWGG 2 cut(s) 141, 384
MwoI GCNNNNNNNGC 1 cut(s) 83
NciI CCSGG 1 cut(s) 178
NdeII GATC 6 cut(s) 219, 261, 280, 649, 956, 1006
NlaIII CATG 4 cut(s) 19, 202, 519, 918
NlaIV GGNNCC 2 cut(s) 321, 651
NmeAIII GCCGAG 1 cut(s) 1066
NsbI TGCGCA 1 cut(s) 1061
NspV TTCGAA 1 cut(s) 934
PdmI GAANNNNTTC 3 cut(s) 365, 563, 930
PfeI GAWTC 3 cut(s) 695, 734, 746
PflMI CCANNNNNTGG 1 cut(s) 977
PinAI ACCGGT 1 cut(s) 91
PleI GAGTC 2 cut(s) 386, 541
PpsI GAGTC 2 cut(s) 386, 541
Psp6I CCWGG 2 cut(s) 139, 382
PspGI CCWGG 2 cut(s) 139, 382
PspN4I GGNNCC 2 cut(s) 321, 651
PspPI GGNCC 2 cut(s) 319, 907
PsuI RGATCY 2 cut(s) 649, 956
RsaI GTAC 3 cut(s) 503, 533, 877
RsaNI GTAC 3 cut(s) 502, 532, 876
RseI CAYNNNNRTG 1 cut(s) 42
SaqAI TTAA 2 cut(s) 354, 753
Sau3AI GATC 6 cut(s) 219, 261, 280, 649, 956, 1006
Sau96I GGNCC 2 cut(s) 319, 907
SchI GAGTC 2 cut(s) 387, 541
ScrFI CCNGG 3 cut(s) 141, 178, 384
SduI GDGCHC 2 cut(s) 815, 985
SetI ASST 6 cut(s) 73, 191, 507, 616, 789, 1025
SfaNI GCATC 2 cut(s) 73, 957
SfuI TTCGAA 1 cut(s) 934
SinI GGWCC 2 cut(s) 319, 907
SmiMI CAYNNNNRTG 1 cut(s) 42
SmlI CTYRAG 1 cut(s) 397
SmoI CTYRAG 1 cut(s) 397
Sse9I AATT 5 cut(s) 52, 265, 676, 829, 901
SsiI CCGC 1 cut(s) 590
SspMI CTAG 1 cut(s) 411
StyD4I CCNGG 3 cut(s) 139, 176, 382
TaaI ACNGT 4 cut(s) 41, 109, 601, 1075
TaiI ACGT 3 cut(s) 73, 191, 616
TaqI TCGA 6 cut(s) 686, 705, 801, 919, 934, 1017
TasI AATT 5 cut(s) 52, 265, 676, 829, 901
TatI WGTACW 1 cut(s) 531
TfiI GAWTC 3 cut(s) 695, 734, 746
Tru1I TTAA 2 cut(s) 354, 753
Tru9I TTAA 2 cut(s) 354, 753
TspDTI ATGAA 5 cut(s) 32, 358, 422, 426, 849
Van91I CCANNNNNTGG 1 cut(s) 977
VpaK11BI GGWCC 2 cut(s) 319, 907
XagI CCTNNNNNAGG 1 cut(s) 1096
XmiI GTMKAC 2 cut(s) 448, 1025
XmnI GAANNNNTTC 3 cut(s) 365, 563, 930
XspI CTAG 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.