Rw6G011950

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000342
Physical Location & Seq
Forward (+)
21606028 .. 21608037
2010 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G011950.1

Sequence Viewer

Length: 831 bp
ATGGAGGTAGAGCAAGTTCTTCACATGAATGGAGGAGATCGCAAAACAAGCTACGCAAACCACTCACTTCTTCAAAGAGCTGTGATTTCGACGGTGAAGCCTATTGTCGACGCAACCATAGAGGAGCTCTGCAGCACTCTCTTCCCGGAGTGTCTGAAAATAGCGGACTTGGGATGCTCTTCGGGCCCCAATACCCTACTGGTAGTATCAGACATCATAGCCAACATCCAGAACACGTTTCGAAAGCTCAACCTTCCCCCGCCATCGCTCCAAGCATTCTTGAATGACCTTCCCCGGAACGATTTCAACACGGTGTTCAGGTCACTGCCCGGCTTCTATAACAAGCTCGATGAAGAACATGAGAACAAGTCGGGTCCTTGTTTCATTGCAGCAATGCCCGGTTCCTTTTATGGGAGGCTCTTTCCTGACAACTCTCTCCACTTTGTTCATTCTTCTTATGCTCTCATGTGGATCTCTGAGGTCCCAAAAGGTTTGGTAACGAAAGGTGGAGAGGGACTGAACAAGGGGAACATATATATAGCCAAGACAAGCTTACCCGCTGTGTTTAATGAATACTTTGAGCAATTCAAAAGGGACTTCACAGTCTTTCTGAGGTCTCGGGCAAAAGAGCTAGTCCCGGGAGGTAGTATGGTCCTCACAACAATGGGCAGCATAAATAGCAAAGATCCCCTCTGCATTTGGGAATTTGTCGGATTAAAACTCCATGACATGGTTTTAGATGTATGCATGTGCCATGCATTAGATTTCTTCATTTTGGGTACGATAGTCTTTCTCTTACTAACATACTATGATGAATTTTTCAGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

276

Amino Acids

30.98

Weight (kDa)

5.81

Isoelectric Point (pI)

43.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 39 - 246 7e-84 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 602
AccB7I CCANNNNNTGG 1 cut(s) 730
AccI GTMKAC 1 cut(s) 108
AciI CCGC 3 cut(s) 164, 260, 558
AclWI GGATC 2 cut(s) 479, 680
AcsI RAATTY 2 cut(s) 704, 815
AfaI GTAC 1 cut(s) 781
AfiI CCNNNNNNNGG 2 cut(s) 411, 730
AflIII ACRYGT 1 cut(s) 234
AgsI TTSAA 4 cut(s) 74, 283, 307, 589
AluBI AGCT 7 cut(s) 51, 80, 127, 247, 346, 552, 631
AluI AGCT 7 cut(s) 51, 80, 127, 247, 346, 552, 631
Alw21I GWGCWC 1 cut(s) 129
Alw26I GTCTC 1 cut(s) 621
AlwI GGATC 2 cut(s) 479, 680
Ama87I CYCGRG 2 cut(s) 618, 637
AoxI GGCC 1 cut(s) 184
ApaI GGGCCC 1 cut(s) 188
ApeKI GCWGC 3 cut(s) 132, 389, 669
ApoI RAATTY 2 cut(s) 704, 815
Asp700I GAANNNNTTC 1 cut(s) 302
AspS9I GGNCC 5 cut(s) 184, 185, 374, 481, 652
AsuC2I CCSGG 6 cut(s) 146, 295, 330, 399, 638, 639
AsuHPI GGTGA 1 cut(s) 106
AsuII TTCGAA 1 cut(s) 241
AvaI CYCGRG 2 cut(s) 618, 637
AvaII GGWCC 3 cut(s) 374, 481, 652
BaeGI GKGCMC 1 cut(s) 188
BaeI ACNNNNGTAYC 2 cut(s) 771, 804
BanII GRGCYC 2 cut(s) 129, 188
Bbv12I GWGCWC 1 cut(s) 129
BbvI GCAGC 3 cut(s) 144, 401, 681
BccI CCATC 1 cut(s) 271
BcnI CCSGG 6 cut(s) 146, 295, 330, 399, 638, 639
BcoDI GTCTC 1 cut(s) 621
BfaI CTAG 1 cut(s) 632
BfmI CTRYAG 1 cut(s) 130
BisI GCNGC 3 cut(s) 133, 390, 670
BlsI GCNGC 3 cut(s) 134, 391, 671
Bme1390I CCNGG 6 cut(s) 146, 295, 330, 399, 638, 639
Bme18I GGWCC 3 cut(s) 374, 481, 652
BmeT110I CYCGRG 2 cut(s) 618, 637
BmgT120I GGNCC 5 cut(s) 184, 185, 374, 481, 652
BmiI GGNNCC 5 cut(s) 186, 187, 375, 403, 483
BmrFI CCNGG 6 cut(s) 146, 295, 330, 399, 638, 639
BmsI GCATC 1 cut(s) 164
Bpu14I TTCGAA 1 cut(s) 241
BpuMI CCSGG 6 cut(s) 146, 295, 330, 399, 638, 639
BsaI GGTCTC 1 cut(s) 621
BsaJI CCNNGG 2 cut(s) 293, 637
Bsc4I CCNNNNNNNGG 2 cut(s) 411, 730
Bse1I ACTGG 1 cut(s) 204
Bse3DI GCAATG 2 cut(s) 384, 399
BseDI CCNNGG 2 cut(s) 293, 637
BseGI GGATG 2 cut(s) 179, 225
BseLI CCNNNNNNNGG 2 cut(s) 411, 730
BseMI GCAATG 2 cut(s) 384, 399
BseMII CTCAG 2 cut(s) 468, 602
BseNI ACTGG 1 cut(s) 204
BseRI GAGGAG 2 cut(s) 48, 137
BseSI GKGCMC 1 cut(s) 188
BseXI GCAGC 3 cut(s) 144, 401, 681
BshFI GGCC 1 cut(s) 186
BsiHKAI GWGCWC 1 cut(s) 129
BsiHKCI CYCGRG 2 cut(s) 618, 637
BsiSI CCGG 5 cut(s) 146, 295, 330, 399, 638
BslFI GGGAC 4 cut(s) 467, 528, 608, 620
BslI CCNNNNNNNGG 2 cut(s) 411, 730
BsmAI GTCTC 1 cut(s) 621
BsmFI GGGAC 4 cut(s) 467, 528, 608, 620
BsmI GAATGC 1 cut(s) 275
BsnI GGCC 1 cut(s) 186
Bso31I GGTCTC 1 cut(s) 621
BsoBI CYCGRG 2 cut(s) 618, 637
Bsp119I TTCGAA 1 cut(s) 241
Bsp120I GGGCCC 1 cut(s) 184
Bsp1286I GDGCHC 2 cut(s) 129, 188
Bsp143I GATC 3 cut(s) 37, 471, 685
BspACI CCGC 3 cut(s) 164, 260, 558
BspANI GGCC 1 cut(s) 186
BspCNI CTCAG 2 cut(s) 469, 603
BspLI GGNNCC 5 cut(s) 186, 187, 375, 403, 483
BspMAI CTGCAG 1 cut(s) 134
BspPI GGATC 2 cut(s) 479, 680
BspQI GCTCTTC 1 cut(s) 184
BspT104I TTCGAA 1 cut(s) 241
BspTNI GGTCTC 1 cut(s) 621
BsrDI GCAATG 2 cut(s) 384, 399
BsrI ACTGG 1 cut(s) 204
BssECI CCNNGG 2 cut(s) 293, 637
BssMI GATC 3 cut(s) 37, 471, 685
Bst4CI ACNGT 3 cut(s) 94, 313, 604
Bst6I CTCTTC 2 cut(s) 146, 184
BstBI TTCGAA 1 cut(s) 241
BstDEI CTNAG 2 cut(s) 477, 611
BstF5I GGATG 2 cut(s) 179, 225
BstKTI GATC 3 cut(s) 40, 474, 688
BstMAI GTCTC 1 cut(s) 621
BstMBI GATC 3 cut(s) 37, 471, 685
BstMWI GCNNNNNNNGC 3 cut(s) 48, 183, 678
BstNSI RCATGY 1 cut(s) 751
BstSCI CCNGG 6 cut(s) 144, 293, 328, 397, 636, 637
BstSFI CTRYAG 1 cut(s) 130
BstSLI GKGCMC 1 cut(s) 188
BstV1I GCAGC 3 cut(s) 144, 401, 681
BstX2I RGATCY 2 cut(s) 471, 685
BstYI RGATCY 2 cut(s) 471, 685
BsuRI GGCC 1 cut(s) 186
BtgZI GCGATG 1 cut(s) 249
BtsCI GGATG 2 cut(s) 179, 225
BtsI GCAGTG 1 cut(s) 323
BtsIMutI CAGTG 1 cut(s) 323
Cfr13I GGNCC 5 cut(s) 184, 185, 374, 481, 652
Cfr9I CCCGGG 1 cut(s) 637
CseI GACGC 1 cut(s) 119
Csp6I GTAC 1 cut(s) 780
CviAII CATG 7 cut(s) 25, 359, 466, 725, 730, 748, 755
CviQI GTAC 1 cut(s) 780
DdeI CTNAG 2 cut(s) 477, 611
DpnI GATC 3 cut(s) 39, 473, 687
DpnII GATC 3 cut(s) 37, 471, 685
DrdI GACNNNNNNGTC 1 cut(s) 602
DseDI GACNNNNNNGTC 1 cut(s) 602
Eam1104I CTCTTC 2 cut(s) 146, 184
EarI CTCTTC 2 cut(s) 146, 184
Ecl136II GAGCTC 1 cut(s) 127
Eco24I GRGCYC 2 cut(s) 129, 188
Eco31I GGTCTC 1 cut(s) 621
Eco47I GGWCC 3 cut(s) 374, 481, 652
Eco53kI GAGCTC 1 cut(s) 127
Eco88I CYCGRG 2 cut(s) 618, 637
EcoICRI GAGCTC 1 cut(s) 127
EcoO109I RGGNCCY 3 cut(s) 185, 374, 481
EcoT22I ATGCAT 2 cut(s) 749, 760
EcoT38I GRGCYC 2 cut(s) 129, 188
FaeI CATG 7 cut(s) 28, 362, 469, 728, 733, 751, 758
FalI AAGNNNNNCTT 2 cut(s) 536, 568
FaqI GGGAC 4 cut(s) 467, 528, 608, 620
FatI CATG 7 cut(s) 24, 358, 465, 724, 729, 747, 754
FauI CCCGC 2 cut(s) 267, 565
FblI GTMKAC 1 cut(s) 108
Fnu4HI GCNGC 3 cut(s) 133, 390, 670
FokI GGATG 2 cut(s) 186, 212
FriOI GRGCYC 2 cut(s) 129, 188
Fsp4HI GCNGC 3 cut(s) 133, 390, 670
FspBI CTAG 1 cut(s) 632
GluI GCNGC 3 cut(s) 133, 390, 670
HaeIII GGCC 1 cut(s) 186
HapII CCGG 5 cut(s) 146, 295, 330, 399, 638
HgaI GACGC 1 cut(s) 119
Hin1II CATG 7 cut(s) 28, 362, 469, 728, 733, 751, 758
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HindIII AAGCTT 1 cut(s) 550
HpaII CCGG 5 cut(s) 146, 295, 330, 399, 638
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 5 cut(s) 156, 211, 478, 612, 713
Hpy188III TCNNGA 3 cut(s) 229, 280, 425
Hpy8I GTNNAC 1 cut(s) 109
Hpy99I CGWCG 2 cut(s) 94, 113
HpyAV CCTTC 2 cut(s) 263, 299
HpyCH4III ACNGT 3 cut(s) 94, 313, 604
HpyCH4IV ACGT 1 cut(s) 236
HpyCH4V TGCA 5 cut(s) 132, 389, 696, 747, 758
HpyF10VI GCNNNNNNNGC 3 cut(s) 48, 183, 678
HpyF3I CTNAG 2 cut(s) 477, 611
HpySE526I ACGT 1 cut(s) 236
Hsp92II CATG 7 cut(s) 28, 362, 469, 728, 733, 751, 758
Kzo9I GATC 3 cut(s) 37, 471, 685
LguI GCTCTTC 1 cut(s) 184
LmnI GCTCC 2 cut(s) 124, 273
Lsp1109I GCAGC 3 cut(s) 144, 401, 681
LweI GCATC 1 cut(s) 164
MaeI CTAG 1 cut(s) 632
MaeII ACGT 1 cut(s) 236
MaeIII GTNAC 2 cut(s) 321, 496
MalI GATC 3 cut(s) 39, 473, 687
MboI GATC 3 cut(s) 37, 471, 685
MboII GAAGA 7 cut(s) 11, 62, 133, 171, 365, 444, 760
MflI RGATCY 2 cut(s) 471, 685
MhlI GDGCHC 2 cut(s) 129, 188
MluCI AATT 3 cut(s) 584, 704, 815
MmeI TCCRAC 1 cut(s) 691
MnlI CCTC 9 cut(s) 26, 115, 408, 472, 505, 606, 635, 665, 701
Mph1103I ATGCAT 2 cut(s) 749, 760
MroXI GAANNNNTTC 1 cut(s) 302
MseI TTAA 2 cut(s) 567, 716
MslI CAYNNNNRTG 2 cut(s) 27, 662
MspA1I CMGCKG 1 cut(s) 560
MspI CCGG 5 cut(s) 146, 295, 330, 399, 638
MspR9I CCNGG 6 cut(s) 146, 295, 330, 399, 638, 639
Mva1269I GAATGC 1 cut(s) 275
MwoI GCNNNNNNNGC 3 cut(s) 48, 183, 678
NciI CCSGG 6 cut(s) 146, 295, 330, 399, 638, 639
NdeII GATC 3 cut(s) 37, 471, 685
NlaIII CATG 7 cut(s) 28, 362, 469, 728, 733, 751, 758
NlaIV GGNNCC 5 cut(s) 186, 187, 375, 403, 483
NmuCI GTSAC 1 cut(s) 321
NsiI ATGCAT 2 cut(s) 749, 760
NspI RCATGY 1 cut(s) 751
NspV TTCGAA 1 cut(s) 241
PciSI GCTCTTC 1 cut(s) 184
PctI GAATGC 1 cut(s) 275
PdmI GAANNNNTTC 1 cut(s) 302
PflMI CCANNNNNTGG 1 cut(s) 730
PfoI TCCNGGA 1 cut(s) 144
PkrI GCNGC 3 cut(s) 134, 391, 671
PpuMI RGGWCCY 2 cut(s) 374, 481
Psp124BI GAGCTC 1 cut(s) 129
Psp5II RGGWCCY 2 cut(s) 374, 481
PspN4I GGNNCC 5 cut(s) 186, 187, 375, 403, 483
PspOMI GGGCCC 1 cut(s) 184
PspPI GGNCC 5 cut(s) 184, 185, 374, 481, 652
PspPPI RGGWCCY 2 cut(s) 374, 481
PsrI GAACNNNNNNTAC 1 cut(s) 32
PstI CTGCAG 1 cut(s) 134
PsuI RGATCY 2 cut(s) 471, 685
RsaI GTAC 1 cut(s) 781
RsaNI GTAC 1 cut(s) 780
RseI CAYNNNNRTG 2 cut(s) 27, 662
SacI GAGCTC 1 cut(s) 129
SalI GTCGAC 1 cut(s) 107
SapI GCTCTTC 1 cut(s) 184
SaqAI TTAA 2 cut(s) 567, 716
SatI GCNGC 3 cut(s) 133, 390, 670
Sau3AI GATC 3 cut(s) 37, 471, 685
Sau96I GGNCC 5 cut(s) 184, 185, 374, 481, 652
ScrFI CCNGG 6 cut(s) 146, 295, 330, 399, 638, 639
SduI GDGCHC 2 cut(s) 129, 188
SfaNI GCATC 1 cut(s) 164
SfcI CTRYAG 1 cut(s) 130
SfuI TTCGAA 1 cut(s) 241
SinI GGWCC 3 cut(s) 374, 481, 652
SmaI CCCGGG 1 cut(s) 639
SmiMI CAYNNNNRTG 2 cut(s) 27, 662
Sse9I AATT 3 cut(s) 584, 704, 815
SsiI CCGC 3 cut(s) 164, 260, 558
SspMI CTAG 1 cut(s) 632
SstI GAGCTC 1 cut(s) 129
StyD4I CCNGG 6 cut(s) 144, 293, 328, 397, 636, 637
TaaI ACNGT 3 cut(s) 94, 313, 604
TaiI ACGT 1 cut(s) 239
TaqI TCGA 4 cut(s) 89, 108, 241, 348
TasI AATT 3 cut(s) 584, 704, 815
Tru1I TTAA 2 cut(s) 567, 716
Tru9I TTAA 2 cut(s) 567, 716
TscAI CASTG 1 cut(s) 330
TseFI GTSAC 1 cut(s) 321
TseI GCWGC 3 cut(s) 132, 389, 669
Tsp45I GTSAC 1 cut(s) 321
TspDTI ATGAA 7 cut(s) 41, 366, 373, 437, 585, 760, 828
TspMI CCCGGG 1 cut(s) 637
TspRI CASTG 1 cut(s) 330
Van91I CCANNNNNTGG 1 cut(s) 730
VpaK11BI GGWCC 3 cut(s) 374, 481, 652
XapI RAATTY 2 cut(s) 704, 815
XceI RCATGY 1 cut(s) 751
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
XmaI CCCGGG 1 cut(s) 637
XmiI GTMKAC 1 cut(s) 108
XmnI GAANNNNTTC 1 cut(s) 302
XspI CTAG 1 cut(s) 632
Zsp2I ATGCAT 2 cut(s) 749, 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.