Prupe.8G093000_v2.0.a1

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000342
Physical Location & Seq
Reverse (-)
12572965 .. 12574783
1819 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G093000.1

Sequence Viewer

Length: 1077 bp
ATGAAGGTAGAGCAAGTCCTACACATGAATGGAGGAGTTGGGAAAACAAGCTATGCAAACAATTCCCTACTTCAAAGAGCAGTGATTTCAATGGTGAAGCCCATAGTTGGTGCAAGCATAGAGGAGCTGTGTTGCACTCTCTTCCCAGAGTGTTTGAAAGTAGCGGACTTGGGATGCTCTTCAGGACCCAACACCCTTTTGGTGGTATCAGATATCATTGACAGCATCCACACAACTTACCAAAAACTCAACCGCCCACCTCCATCACTCCAAGCCTTCTTGAATGATCTTCCTGGAAACGATTTCAACACGGTGTTCAGGTCATTGCCAGGCTTCTATAAGAAACTTGATGAAGAACATGAGAAGAAGTTTGGGTCATGTTTTATTGCAGGAATGCCTGGTTCTTTCTATGGCAGGCTCTTCCCCAATAATTCTCTGCACTTTGTTCACTCTTCTTATGCTCTTCACTGGATCTCTGAGATTCCAAAAGGCTTGGTGACCAAAGAAGGAAAGGCACTTAACAAGGGGAACATATATATAGCAAAGACAAGCCCTCCAGCTGTGTTTAACCAATACTTGGAGCAATTCAAAAGGGACTTCACAGTCTGTCTGAGGTCACGTGCCGAAGAGCTCGTCCCTGGGGGCAGTATGGTCCTCACAACCATGGGCAGCATTAAGAGTGACGATCCCCTCTGCATTTGGGAATTTGTAGGACTGAAACTCAATGACATGGTTTTAGAGGGTTTGATTGAAGAGGAAAAATTGGACACATTCAATATGCCATACTATGCACCTACAACGAAGGAGATCGAAGAGGTGATCGAGGCTGAAGGATCTTTTATTTTGCAAAACCTTGAAGTTTTCAAGCAAGCGAACAGTGGCCTGGATAAGAAGACAAGGGCTGCAATATTTGCCACTGACATAAGGGCTGTAGGAGAGCCGATTCTGGCGAGCCAATTCGGAGAAGCACCCATGGACGATTTGTTTCGTAGGTTTGAAGCAGATGTTCTTGATCACAAGGAAAGGGAAAACTGCCAGTTCATTAACCTGGTTATCTCGTTGACAAAGAAGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

359

Amino Acids

39.99

Weight (kDa)

5.63

Isoelectric Point (pI)

48.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 602
AccB7I CCANNNNNTGG 1 cut(s) 577
AciI CCGC 2 cut(s) 164, 253
AclWI GGATC 3 cut(s) 479, 680, 841
AcsI RAATTY 1 cut(s) 704
AcuI CTGAAG 2 cut(s) 165, 849
AcvI CACGTG 1 cut(s) 620
AfiI CCNNNNNNNGG 3 cut(s) 107, 202, 577
AjnI CCWGG 6 cut(s) 292, 328, 397, 637, 882, 1047
AluBI AGCT 4 cut(s) 51, 127, 560, 631
AluI AGCT 4 cut(s) 51, 127, 560, 631
Alw21I GWGCWC 1 cut(s) 633
AlwI GGATC 3 cut(s) 479, 680, 841
AoxI GGCC 1 cut(s) 880
ApeKI GCWGC 2 cut(s) 669, 902
ApoI RAATTY 1 cut(s) 704
ArsI GACNNNNNNTTYG 2 cut(s) 618, 650
AspS9I GGNCC 2 cut(s) 185, 652
AsuHPI GGTGA 3 cut(s) 106, 508, 829
AvaII GGWCC 2 cut(s) 185, 652
BanII GRGCYC 1 cut(s) 633
BbrPI CACGTG 1 cut(s) 620
BbsI GAAGAC 1 cut(s) 899
Bbv12I GWGCWC 1 cut(s) 633
BbvI GCAGC 2 cut(s) 681, 889
BccI CCATC 1 cut(s) 271
BciT130I CCWGG 6 cut(s) 294, 330, 399, 639, 884, 1049
BclI TGATCA 1 cut(s) 1012
BfmI CTRYAG 1 cut(s) 930
BisI GCNGC 2 cut(s) 670, 903
BlsI GCNGC 2 cut(s) 671, 904
Bme1390I CCNGG 6 cut(s) 294, 330, 399, 639, 884, 1049
Bme18I GGWCC 2 cut(s) 185, 652
BmgT120I GGNCC 2 cut(s) 185, 652
BmiI GGNNCC 1 cut(s) 187
BmrFI CCNGG 6 cut(s) 294, 330, 399, 639, 884, 1049
BmsI GCATC 2 cut(s) 164, 234
BpiI GAAGAC 1 cut(s) 899
BpmI CTGGAG 1 cut(s) 540
BsaAI YACGTR 1 cut(s) 620
BsaJI CCNNGG 4 cut(s) 637, 638, 663, 972
BsaXI ACNNNNNCTCC 2 cut(s) 538, 568
Bsc4I CCNNNNNNNGG 3 cut(s) 107, 202, 577
Bse1I ACTGG 2 cut(s) 473, 1036
Bse3DI GCAATG 1 cut(s) 323
BseBI CCWGG 6 cut(s) 294, 330, 399, 639, 884, 1049
BseDI CCNNGG 4 cut(s) 637, 638, 663, 972
BseGI GGATG 2 cut(s) 179, 225
BseLI CCNNNNNNNGG 3 cut(s) 107, 202, 577
BseMI GCAATG 1 cut(s) 323
BseMII CTCAG 2 cut(s) 468, 602
BseNI ACTGG 2 cut(s) 473, 1036
BseRI GAGGAG 2 cut(s) 48, 137
BseXI GCAGC 2 cut(s) 681, 889
BsgI GTGCAG 1 cut(s) 422
BshFI GGCC 1 cut(s) 882
BsiHKAI GWGCWC 1 cut(s) 633
BslFI GGGAC 2 cut(s) 608, 620
BslI CCNNNNNNNGG 3 cut(s) 107, 202, 577
BsmFI GGGAC 2 cut(s) 608, 620
BsmI GAATGC 1 cut(s) 399
BsnI GGCC 1 cut(s) 882
Bsp1286I GDGCHC 1 cut(s) 633
Bsp143I GATC 7 cut(s) 286, 471, 685, 807, 819, 833, 1012
Bsp19I CCATGG 2 cut(s) 663, 972
BspACI CCGC 2 cut(s) 164, 253
BspANI GGCC 1 cut(s) 882
BspCNI CTCAG 2 cut(s) 469, 603
BspLI GGNNCC 1 cut(s) 187
BspPI GGATC 3 cut(s) 479, 680, 841
BspQI GCTCTTC 4 cut(s) 184, 425, 468, 621
BsrDI GCAATG 1 cut(s) 323
BsrI ACTGG 2 cut(s) 473, 1036
BssECI CCNNGG 4 cut(s) 637, 638, 663, 972
BssMI GATC 7 cut(s) 286, 471, 685, 807, 819, 833, 1012
BssT1I CCWWGG 2 cut(s) 663, 972
Bst2UI CCWGG 6 cut(s) 294, 330, 399, 639, 884, 1049
Bst4CI ACNGT 3 cut(s) 313, 604, 878
Bst6I CTCTTC 8 cut(s) 146, 184, 425, 457, 468, 621, 747, 807
BstAPI GCANNNNNTGC 1 cut(s) 911
BstBAI YACGTR 1 cut(s) 620
BstC8I GCNNGC 4 cut(s) 115, 416, 870, 952
BstDEI CTNAG 2 cut(s) 477, 611
BstDSI CCRYGG 2 cut(s) 663, 972
BstEII GGTNACC 1 cut(s) 496
BstF5I GGATG 2 cut(s) 179, 225
BstKTI GATC 7 cut(s) 289, 474, 688, 810, 822, 836, 1015
BstMBI GATC 7 cut(s) 286, 471, 685, 807, 819, 833, 1012
BstMWI GCNNNNNNNGC 1 cut(s) 911
BstNI CCWGG 6 cut(s) 294, 330, 399, 639, 884, 1049
BstPI GGTNACC 1 cut(s) 496
BstSCI CCNGG 6 cut(s) 292, 328, 397, 637, 882, 1047
BstSFI CTRYAG 1 cut(s) 930
BstV1I GCAGC 2 cut(s) 681, 889
BstV2I GAAGAC 1 cut(s) 899
BstX2I RGATCY 2 cut(s) 471, 833
BstYI RGATCY 2 cut(s) 471, 833
BsuRI GGCC 1 cut(s) 882
BtgI CCRYGG 2 cut(s) 663, 972
BtsCI GGATG 2 cut(s) 179, 225
BtsI GCAGTG 1 cut(s) 87
BtsIMutI CAGTG 4 cut(s) 87, 466, 883, 915
Cac8I GCNNGC 4 cut(s) 115, 416, 870, 952
Cfr13I GGNCC 2 cut(s) 185, 652
CsiI ACCWGGT 1 cut(s) 1047
CviAII CATG 6 cut(s) 25, 359, 378, 664, 730, 973
DdeI CTNAG 2 cut(s) 477, 611
DpnI GATC 7 cut(s) 288, 473, 687, 809, 821, 835, 1014
DpnII GATC 7 cut(s) 286, 471, 685, 807, 819, 833, 1012
DrdI GACNNNNNNGTC 1 cut(s) 602
DseDI GACNNNNNNGTC 1 cut(s) 602
Eam1104I CTCTTC 8 cut(s) 146, 184, 425, 457, 468, 621, 747, 807
EarI CTCTTC 8 cut(s) 146, 184, 425, 457, 468, 621, 747, 807
Ecl136II GAGCTC 1 cut(s) 631
Eco130I CCWWGG 2 cut(s) 663, 972
Eco24I GRGCYC 1 cut(s) 633
Eco32I GATATC 1 cut(s) 214
Eco47I GGWCC 2 cut(s) 185, 652
Eco53kI GAGCTC 1 cut(s) 631
Eco57I CTGAAG 2 cut(s) 165, 849
Eco72I CACGTG 1 cut(s) 620
Eco91I GGTNACC 1 cut(s) 496
EcoICRI GAGCTC 1 cut(s) 631
EcoO109I RGGNCCY 1 cut(s) 185
EcoO65I GGTNACC 1 cut(s) 496
EcoRII CCWGG 6 cut(s) 292, 328, 397, 637, 882, 1047
EcoRV GATATC 1 cut(s) 214
EcoT14I CCWWGG 2 cut(s) 663, 972
EcoT38I GRGCYC 1 cut(s) 633
ErhI CCWWGG 2 cut(s) 663, 972
FaeI CATG 6 cut(s) 28, 362, 381, 667, 733, 976
FaqI GGGAC 2 cut(s) 608, 620
FatI CATG 6 cut(s) 24, 358, 377, 663, 729, 972
FbaI TGATCA 1 cut(s) 1012
Fnu4HI GCNGC 2 cut(s) 670, 903
FokI GGATG 2 cut(s) 186, 212
FriOI GRGCYC 1 cut(s) 633
Fsp4HI GCNGC 2 cut(s) 670, 903
GluI GCNGC 2 cut(s) 670, 903
GsuI CTGGAG 1 cut(s) 540
HaeIII GGCC 1 cut(s) 882
Hin1II CATG 6 cut(s) 28, 362, 381, 667, 733, 976
HincII GTYRAC 1 cut(s) 1062
HindII GTYRAC 1 cut(s) 1062
HinfI GANTC 2 cut(s) 481, 943
HphI GGTGA 3 cut(s) 106, 508, 829
Hpy166II GTNNAC 2 cut(s) 448, 1062
Hpy188I TCNGA 4 cut(s) 211, 478, 612, 962
Hpy188III TCNNGA 3 cut(s) 183, 280, 1010
Hpy8I GTNNAC 2 cut(s) 448, 1062
HpyAV CCTTC 4 cut(s) 286, 500, 796, 824
HpyCH4III ACNGT 3 cut(s) 313, 604, 878
HpyCH4IV ACGT 1 cut(s) 619
HpyCH4V TGCA 9 cut(s) 56, 113, 135, 389, 439, 696, 791, 847, 905
HpyF10VI GCNNNNNNNGC 1 cut(s) 911
HpyF3I CTNAG 2 cut(s) 477, 611
HpySE526I ACGT 1 cut(s) 619
Hsp92II CATG 6 cut(s) 28, 362, 381, 667, 733, 976
Ksp22I TGATCA 1 cut(s) 1012
Kzo9I GATC 7 cut(s) 286, 471, 685, 807, 819, 833, 1012
LguI GCTCTTC 4 cut(s) 184, 425, 468, 621
LmnI GCTCC 2 cut(s) 124, 580
Lsp1109I GCAGC 2 cut(s) 681, 889
LweI GCATC 2 cut(s) 164, 234
MabI ACCWGGT 1 cut(s) 1047
MaeII ACGT 1 cut(s) 619
MaeIII GTNAC 3 cut(s) 496, 615, 680
MalI GATC 7 cut(s) 288, 473, 687, 809, 821, 835, 1014
MboI GATC 7 cut(s) 286, 471, 685, 807, 819, 833, 1012
MflI RGATCY 2 cut(s) 471, 833
MhlI GDGCHC 1 cut(s) 633
MluCI AATT 6 cut(s) 61, 430, 584, 704, 761, 956
MseI TTAA 4 cut(s) 519, 567, 675, 1044
MslI CAYNNNNRTG 2 cut(s) 27, 662
MspA1I CMGCKG 1 cut(s) 560
MspR9I CCNGG 6 cut(s) 294, 330, 399, 639, 884, 1049
Mva1269I GAATGC 1 cut(s) 399
MvaI CCWGG 6 cut(s) 294, 330, 399, 639, 884, 1049
MwoI GCNNNNNNNGC 1 cut(s) 911
NcoI CCATGG 2 cut(s) 663, 972
NdeII GATC 7 cut(s) 286, 471, 685, 807, 819, 833, 1012
NlaIII CATG 6 cut(s) 28, 362, 381, 667, 733, 976
NlaIV GGNNCC 1 cut(s) 187
NmuCI GTSAC 3 cut(s) 496, 615, 680
PasI CCCWGGG 1 cut(s) 638
PciSI GCTCTTC 4 cut(s) 184, 425, 468, 621
PctI GAATGC 1 cut(s) 399
PfeI GAWTC 2 cut(s) 481, 943
PflMI CCANNNNNTGG 1 cut(s) 577
PfoI TCCNGGA 1 cut(s) 292
PkrI GCNGC 2 cut(s) 671, 904
PmaCI CACGTG 1 cut(s) 620
PmlI CACGTG 1 cut(s) 620
Ppu21I YACGTR 1 cut(s) 620
PpuMI RGGWCCY 1 cut(s) 185
Psp124BI GAGCTC 1 cut(s) 633
Psp5II RGGWCCY 1 cut(s) 185
Psp6I CCWGG 6 cut(s) 292, 328, 397, 637, 882, 1047
PspCI CACGTG 1 cut(s) 620
PspEI GGTNACC 1 cut(s) 496
PspGI CCWGG 6 cut(s) 292, 328, 397, 637, 882, 1047
PspN4I GGNNCC 1 cut(s) 187
PspPI GGNCC 2 cut(s) 185, 652
PspPPI RGGWCCY 1 cut(s) 185
PsuI RGATCY 2 cut(s) 471, 833
PvuII CAGCTG 1 cut(s) 560
RseI CAYNNNNRTG 2 cut(s) 27, 662
SacI GAGCTC 1 cut(s) 633
SapI GCTCTTC 4 cut(s) 184, 425, 468, 621
SaqAI TTAA 4 cut(s) 519, 567, 675, 1044
SatI GCNGC 2 cut(s) 670, 903
Sau3AI GATC 7 cut(s) 286, 471, 685, 807, 819, 833, 1012
Sau96I GGNCC 2 cut(s) 185, 652
ScrFI CCNGG 6 cut(s) 294, 330, 399, 639, 884, 1049
SduI GDGCHC 1 cut(s) 633
SexAI ACCWGGT 1 cut(s) 1047
SfaNI GCATC 2 cut(s) 164, 234
SfcI CTRYAG 1 cut(s) 930
SinI GGWCC 2 cut(s) 185, 652
SmiMI CAYNNNNRTG 2 cut(s) 27, 662
Sse9I AATT 6 cut(s) 61, 430, 584, 704, 761, 956
SsiI CCGC 2 cut(s) 164, 253
SspI AATATT 1 cut(s) 909
SstI GAGCTC 1 cut(s) 633
StyD4I CCNGG 6 cut(s) 292, 328, 397, 637, 882, 1047
StyI CCWWGG 2 cut(s) 663, 972
TaaI ACNGT 3 cut(s) 313, 604, 878
TaiI ACGT 1 cut(s) 622
TaqI TCGA 2 cut(s) 810, 822
TasI AATT 6 cut(s) 61, 430, 584, 704, 761, 956
TfiI GAWTC 2 cut(s) 481, 943
Tru1I TTAA 4 cut(s) 519, 567, 675, 1044
Tru9I TTAA 4 cut(s) 519, 567, 675, 1044
TscAI CASTG 4 cut(s) 87, 473, 883, 922
TseFI GTSAC 3 cut(s) 496, 615, 680
TseI GCWGC 2 cut(s) 669, 902
Tsp45I GTSAC 3 cut(s) 496, 615, 680
TspDTI ATGAA 4 cut(s) 17, 41, 366, 1030
TspRI CASTG 4 cut(s) 87, 473, 883, 922
Van91I CCANNNNNTGG 1 cut(s) 577
VpaK11BI GGWCC 2 cut(s) 185, 652
XapI RAATTY 1 cut(s) 704
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.