MD10G1071500.v1.1

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000342
Physical Location & Seq
Reverse (-)
9949606 .. 9953333
3728 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1071500.v1.1.491

Sequence Viewer

Length: 1107 bp
ATGGAGCTAGAGCAAGTGCTTCACATGAATGGAGGAGTTGGGAAAACAAGCTATGCAAGCAACTCACTACATCCAGTTAGTCTCCATCCAGCTGTGATTTCATTGGTGAAGCCCATAGTTAATGCAAGCATAGAGCAGCTTTGCAGCAAACTCTTCTCTGACTGTTTGAAAATAGCAGACTTGGGATGCTCTTCCGGACCCAACACCCTTTTGGTGGTATCAGATATCATACACAACATCCATGCCGCTTTCCAAAAACTGAACCGTCCATCTCCTACCATCCAAGTCTTCTTGAATGATCTTCCCGGGAACGATTTCAACACTGTGTTCAGGTCATTGCCAGGGTTCTATAAGAAATTTGAGGAAGAACAGAAGTTAGGGCCATGTTTCGTTACTGCAATGCCTGGTTCTTTCTATGGCAGGCTCTTTCCAAACAATTCTCTCCACTTTATTCACTCTAATTATGCCCTTATGTGGATCTCTGAGGCTCCAAAAGGTTTGATCACCAAGGACGGAGAGGGACTAAACAAGCAGAACATATATATAGCGAAGACAAGCCCGCATGATGTGTATAAGCTGTATTTGGAGCAATTCAAAAAGGACTTCACAGTGTTTTTGAGGTCACGAGCAGAAGAGCAGGTCTCCGGAGGAAGTATGGTCCTCACAACAATGGGCAGCATAAAGAGCCATGATCCACTTTGCATTTGGGAAGTTGTCGGACTTAAACTCAATGATATGGTTTTAGAGGGTTTGATTGAGGAGGAAAAATTGGACACATTCGATCTGCCATATTATGCACCTACAACAAAGGAAGTTGAAGATATGATCGAGGCGGAAGGATCTTTTACTTTGCAAAGCCTTGAAGTTTTCAAAAATGATTGGGACTCTTATATAAAGCATGCTGACAGTGGCCTTGATAAAAAGGCCAGGGCTGCCGTAATTGCCACTGATATAAGGGCTGTGGGAGAGCCTATTCTGGCAACCCAATTCGGAGATGAAGCTATGGACGATTTGTTTCGCCGGTTCGAAGAAGATGTCCTTGATCACATGGAAATGGAGAATTGCCAGTACATTAACCTGGTTATCTCGTTGACAAAGAAGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

369

Amino Acids

41.31

Weight (kDa)

5.2

Isoelectric Point (pI)

42.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 44 - 366 6e-121 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 628
AccIII TCCGGA 2 cut(s) 194, 644
AciI CCGC 3 cut(s) 246, 560, 833
AclWI GGATC 3 cut(s) 485, 686, 847
AcsI RAATTY 1 cut(s) 356
AfaI GTAC 1 cut(s) 1070
AfiI CCNNNNNNNGG 2 cut(s) 214, 474
AgsI TTSAA 7 cut(s) 169, 295, 319, 595, 818, 863, 871
AjnI CCWGG 4 cut(s) 340, 403, 926, 1077
AluBI AGCT 6 cut(s) 7, 51, 92, 139, 577, 1001
AluI AGCT 6 cut(s) 7, 51, 92, 139, 577, 1001
Alw26I GTCTC 2 cut(s) 86, 646
AlwI GGATC 3 cut(s) 485, 686, 847
Ama87I CYCGRG 1 cut(s) 305
Aor13HI TCCGGA 2 cut(s) 194, 644
AoxI GGCC 3 cut(s) 380, 910, 924
ApeKI GCWGC 4 cut(s) 136, 144, 675, 932
ApoI RAATTY 1 cut(s) 356
ArsI GACNNNNNNTTYG 2 cut(s) 1020, 1052
Asp700I GAANNNNTTC 1 cut(s) 314
AspS9I GGNCC 3 cut(s) 197, 380, 658
AsuC2I CCSGG 2 cut(s) 306, 307
AsuHPI GGTGA 2 cut(s) 118, 496
AsuII TTCGAA 1 cut(s) 1026
AvaI CYCGRG 1 cut(s) 305
AvaII GGWCC 2 cut(s) 197, 658
BauI CACGAG 1 cut(s) 624
BbsI GAAGAC 2 cut(s) 280, 557
BbvI GCAGC 4 cut(s) 148, 156, 687, 919
BccI CCATC 3 cut(s) 93, 277, 287
BceAI ACGGC 1 cut(s) 920
BciT130I CCWGG 4 cut(s) 342, 405, 928, 1079
BclI TGATCA 2 cut(s) 501, 1042
BcnI CCSGG 2 cut(s) 306, 307
BcoDI GTCTC 2 cut(s) 86, 646
BfaI CTAG 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 628
BisI GCNGC 5 cut(s) 137, 145, 246, 676, 933
BlsI GCNGC 5 cut(s) 138, 146, 247, 677, 934
Bme1390I CCNGG 6 cut(s) 306, 307, 342, 405, 928, 1079
Bme18I GGWCC 2 cut(s) 197, 658
BmeT110I CYCGRG 1 cut(s) 305
BmgT120I GGNCC 3 cut(s) 197, 380, 658
BmiI GGNNCC 2 cut(s) 199, 489
BmrFI CCNGG 6 cut(s) 306, 307, 342, 405, 928, 1079
BmsI GCATC 1 cut(s) 176
BpiI GAAGAC 2 cut(s) 280, 557
BplI GAGNNNNNCTC 2 cut(s) 626, 658
Bpu14I TTCGAA 1 cut(s) 1026
BpuMI CCSGG 2 cut(s) 306, 307
BsaI GGTCTC 1 cut(s) 646
BsaJI CCNNGG 4 cut(s) 305, 341, 507, 927
BsaWI WCCGGW 2 cut(s) 194, 644
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 474
Bse118I RCCGGY 1 cut(s) 1020
Bse1I ACTGG 2 cut(s) 74, 1066
Bse3DI GCAATG 2 cut(s) 335, 405
BseAI TCCGGA 2 cut(s) 194, 644
BseBI CCWGG 4 cut(s) 342, 405, 928, 1079
BseDI CCNNGG 4 cut(s) 305, 341, 507, 927
BseGI GGATG 5 cut(s) 70, 85, 191, 237, 279
BseLI CCNNNNNNNGG 2 cut(s) 214, 474
BseMI GCAATG 2 cut(s) 335, 405
BseMII CTCAG 1 cut(s) 474
BseNI ACTGG 2 cut(s) 74, 1066
BseRI GAGGAG 2 cut(s) 48, 773
BseXI GCAGC 4 cut(s) 148, 156, 687, 919
BshFI GGCC 3 cut(s) 382, 912, 926
BsiHKCI CYCGRG 1 cut(s) 305
BsiSI CCGG 4 cut(s) 195, 306, 645, 1021
BslFI GGGAC 2 cut(s) 534, 896
BslI CCNNNNNNNGG 2 cut(s) 214, 474
BsmAI GTCTC 2 cut(s) 86, 646
BsmFI GGGAC 2 cut(s) 534, 896
BsnI GGCC 3 cut(s) 382, 912, 926
Bso31I GGTCTC 1 cut(s) 646
BsoBI CYCGRG 1 cut(s) 305
Bsp119I TTCGAA 1 cut(s) 1026
Bsp13I TCCGGA 2 cut(s) 194, 644
Bsp143I GATC 8 cut(s) 298, 477, 501, 691, 781, 825, 839, 1042
BspACI CCGC 3 cut(s) 246, 560, 833
BspANI GGCC 3 cut(s) 382, 912, 926
BspCNI CTCAG 1 cut(s) 475
BspEI TCCGGA 2 cut(s) 194, 644
BspLI GGNNCC 2 cut(s) 199, 489
BspMI ACCTGC 1 cut(s) 628
BspPI GGATC 3 cut(s) 485, 686, 847
BspQI GCTCTTC 2 cut(s) 196, 627
BspT104I TTCGAA 1 cut(s) 1026
BspTNI GGTCTC 1 cut(s) 646
BsrDI GCAATG 2 cut(s) 335, 405
BsrFI RCCGGY 1 cut(s) 1020
BsrI ACTGG 2 cut(s) 74, 1066
BssAI RCCGGY 1 cut(s) 1020
BssECI CCNNGG 4 cut(s) 305, 341, 507, 927
BssMI GATC 8 cut(s) 298, 477, 501, 691, 781, 825, 839, 1042
BssSI CACGAG 1 cut(s) 624
BssT1I CCWWGG 1 cut(s) 507
Bst2BI CACGAG 1 cut(s) 624
Bst2UI CCWGG 4 cut(s) 342, 405, 928, 1079
Bst4CI ACNGT 5 cut(s) 164, 266, 325, 610, 908
Bst6I CTCTTC 3 cut(s) 158, 196, 627
BstBI TTCGAA 1 cut(s) 1026
BstC8I GCNNGC 5 cut(s) 58, 127, 422, 560, 900
BstDEI CTNAG 1 cut(s) 483
BstF5I GGATG 5 cut(s) 70, 85, 191, 237, 279
BstKTI GATC 8 cut(s) 301, 480, 504, 694, 784, 828, 842, 1045
BstMAI GTCTC 2 cut(s) 86, 646
BstMBI GATC 8 cut(s) 298, 477, 501, 691, 781, 825, 839, 1042
BstMWI GCNNNNNNNGC 4 cut(s) 57, 684, 932, 941
BstNI CCWGG 4 cut(s) 342, 405, 928, 1079
BstNSI RCATGY 1 cut(s) 902
BstSCI CCNGG 6 cut(s) 304, 305, 340, 403, 926, 1077
BstV1I GCAGC 4 cut(s) 148, 156, 687, 919
BstV2I GAAGAC 2 cut(s) 280, 557
BstX2I RGATCY 2 cut(s) 477, 839
BstYI RGATCY 2 cut(s) 477, 839
BsuRI GGCC 3 cut(s) 382, 912, 926
BtsCI GGATG 5 cut(s) 70, 85, 191, 237, 279
BtsIMutI CAGTG 4 cut(s) 321, 615, 913, 945
BveI ACCTGC 1 cut(s) 628
Cac8I GCNNGC 5 cut(s) 58, 127, 422, 560, 900
Cfr10I RCCGGY 1 cut(s) 1020
Cfr13I GGNCC 3 cut(s) 197, 380, 658
Cfr9I CCCGGG 1 cut(s) 305
CsiI ACCWGGT 1 cut(s) 1077
Csp6I GTAC 1 cut(s) 1069
CviAII CATG 7 cut(s) 25, 242, 384, 563, 689, 899, 1048
CviQI GTAC 1 cut(s) 1069
DdeI CTNAG 1 cut(s) 483
DpnI GATC 8 cut(s) 300, 479, 503, 693, 783, 827, 841, 1044
DpnII GATC 8 cut(s) 298, 477, 501, 691, 781, 825, 839, 1042
Eam1104I CTCTTC 3 cut(s) 158, 196, 627
EarI CTCTTC 3 cut(s) 158, 196, 627
EciI GGCGGA 1 cut(s) 848
Eco130I CCWWGG 1 cut(s) 507
Eco31I GGTCTC 1 cut(s) 646
Eco32I GATATC 1 cut(s) 226
Eco47I GGWCC 2 cut(s) 197, 658
Eco88I CYCGRG 1 cut(s) 305
EcoRII CCWGG 4 cut(s) 340, 403, 926, 1077
EcoRV GATATC 1 cut(s) 226
EcoT14I CCWWGG 1 cut(s) 507
ErhI CCWWGG 1 cut(s) 507
FaeI CATG 7 cut(s) 28, 245, 387, 566, 692, 902, 1051
FalI AAGNNNNNCTT 2 cut(s) 1023, 1055
FaqI GGGAC 2 cut(s) 534, 896
FatI CATG 7 cut(s) 24, 241, 383, 562, 688, 898, 1047
FauI CCCGC 1 cut(s) 567
FbaI TGATCA 2 cut(s) 501, 1042
Fnu4HI GCNGC 5 cut(s) 137, 145, 246, 676, 933
FokI GGATG 5 cut(s) 57, 72, 198, 224, 266
Fsp4HI GCNGC 5 cut(s) 137, 145, 246, 676, 933
FspBI CTAG 1 cut(s) 8
GluI GCNGC 5 cut(s) 137, 145, 246, 676, 933
HaeIII GGCC 3 cut(s) 382, 912, 926
HapII CCGG 4 cut(s) 195, 306, 645, 1021
Hin1II CATG 7 cut(s) 28, 245, 387, 566, 692, 902, 1051
HincII GTYRAC 1 cut(s) 1092
HindII GTYRAC 1 cut(s) 1092
HinfI GANTC 1 cut(s) 884
HpaII CCGG 4 cut(s) 195, 306, 645, 1021
HphI GGTGA 2 cut(s) 118, 496
Hpy166II GTNNAC 1 cut(s) 1092
Hpy188I TCNGA 5 cut(s) 160, 223, 484, 719, 992
Hpy188III TCNNGA 4 cut(s) 195, 292, 624, 645
Hpy8I GTNNAC 1 cut(s) 1092
HpyAV CCTTC 1 cut(s) 830
HpyCH4III ACNGT 5 cut(s) 164, 266, 325, 610, 908
HpyCH4V TGCA 7 cut(s) 56, 125, 144, 398, 702, 797, 853
HpyF10VI GCNNNNNNNGC 4 cut(s) 57, 684, 932, 941
HpyF3I CTNAG 1 cut(s) 483
Hsp92II CATG 7 cut(s) 28, 245, 387, 566, 692, 902, 1051
Kpn2I TCCGGA 2 cut(s) 194, 644
Ksp22I TGATCA 2 cut(s) 501, 1042
Kzo9I GATC 8 cut(s) 298, 477, 501, 691, 781, 825, 839, 1042
LguI GCTCTTC 2 cut(s) 196, 627
LmnI GCTCC 3 cut(s) 4, 493, 586
Lsp1109I GCAGC 4 cut(s) 148, 156, 687, 919
LweI GCATC 1 cut(s) 176
MabI ACCWGGT 1 cut(s) 1077
MaeI CTAG 1 cut(s) 8
MaeIII GTNAC 2 cut(s) 391, 621
MalI GATC 8 cut(s) 300, 479, 503, 693, 783, 827, 841, 1044
MboI GATC 8 cut(s) 298, 477, 501, 691, 781, 825, 839, 1042
MflI RGATCY 2 cut(s) 477, 839
MluCI AATT 8 cut(s) 356, 436, 460, 590, 767, 939, 986, 1060
MlyI GAGTC 1 cut(s) 878
MmeI TCCRAC 1 cut(s) 697
MroI TCCGGA 2 cut(s) 194, 644
MroXI GAANNNNTTC 1 cut(s) 314
MseI TTAA 3 cut(s) 120, 723, 1074
MslI CAYNNNNRTG 3 cut(s) 27, 668, 1052
MspA1I CMGCKG 1 cut(s) 92
MspI CCGG 4 cut(s) 195, 306, 645, 1021
MspR9I CCNGG 6 cut(s) 306, 307, 342, 405, 928, 1079
MvaI CCWGG 4 cut(s) 342, 405, 928, 1079
MwoI GCNNNNNNNGC 4 cut(s) 57, 684, 932, 941
NciI CCSGG 2 cut(s) 306, 307
NdeII GATC 8 cut(s) 298, 477, 501, 691, 781, 825, 839, 1042
NlaIII CATG 7 cut(s) 28, 245, 387, 566, 692, 902, 1051
NlaIV GGNNCC 2 cut(s) 199, 489
NmuCI GTSAC 1 cut(s) 621
NspI RCATGY 1 cut(s) 902
NspV TTCGAA 1 cut(s) 1026
PaeI GCATGC 1 cut(s) 902
PciSI GCTCTTC 2 cut(s) 196, 627
PdmI GAANNNNTTC 1 cut(s) 314
PkrI GCNGC 5 cut(s) 138, 146, 247, 677, 934
PleI GAGTC 1 cut(s) 878
PpsI GAGTC 1 cut(s) 878
Psp6I CCWGG 4 cut(s) 340, 403, 926, 1077
PspGI CCWGG 4 cut(s) 340, 403, 926, 1077
PspN4I GGNNCC 2 cut(s) 199, 489
PspPI GGNCC 3 cut(s) 197, 380, 658
PsuI RGATCY 2 cut(s) 477, 839
PvuII CAGCTG 1 cut(s) 92
RsaI GTAC 1 cut(s) 1070
RsaNI GTAC 1 cut(s) 1069
RseI CAYNNNNRTG 3 cut(s) 27, 668, 1052
SapI GCTCTTC 2 cut(s) 196, 627
SaqAI TTAA 3 cut(s) 120, 723, 1074
SatI GCNGC 5 cut(s) 137, 145, 246, 676, 933
Sau3AI GATC 8 cut(s) 298, 477, 501, 691, 781, 825, 839, 1042
Sau96I GGNCC 3 cut(s) 197, 380, 658
SchI GAGTC 1 cut(s) 878
ScrFI CCNGG 6 cut(s) 306, 307, 342, 405, 928, 1079
SexAI ACCWGGT 1 cut(s) 1077
SfaNI GCATC 1 cut(s) 176
SfuI TTCGAA 1 cut(s) 1026
SinI GGWCC 2 cut(s) 197, 658
SmaI CCCGGG 1 cut(s) 307
SmiMI CAYNNNNRTG 3 cut(s) 27, 668, 1052
SphI GCATGC 1 cut(s) 902
Sse9I AATT 8 cut(s) 356, 436, 460, 590, 767, 939, 986, 1060
SsiI CCGC 3 cut(s) 246, 560, 833
SspMI CTAG 1 cut(s) 8
StyD4I CCNGG 6 cut(s) 304, 305, 340, 403, 926, 1077
StyI CCWWGG 1 cut(s) 507
TaaI ACNGT 5 cut(s) 164, 266, 325, 610, 908
TaqI TCGA 3 cut(s) 780, 828, 1026
TasI AATT 8 cut(s) 356, 436, 460, 590, 767, 939, 986, 1060
TatI WGTACW 1 cut(s) 1068
TauI GCSGC 1 cut(s) 248
Tru1I TTAA 3 cut(s) 120, 723, 1074
Tru9I TTAA 3 cut(s) 120, 723, 1074
TscAI CASTG 4 cut(s) 328, 615, 913, 952
TseFI GTSAC 1 cut(s) 621
TseI GCWGC 4 cut(s) 136, 144, 675, 932
Tsp45I GTSAC 1 cut(s) 621
TspDTI ATGAA 3 cut(s) 41, 90, 1011
TspGWI ACGGA 1 cut(s) 528
TspMI CCCGGG 1 cut(s) 305
TspRI CASTG 4 cut(s) 328, 615, 913, 952
VpaK11BI GGWCC 2 cut(s) 197, 658
XapI RAATTY 1 cut(s) 356
XceI RCATGY 1 cut(s) 902
XcmI CCANNNNNNNNNTGG 2 cut(s) 208, 702
XmaI CCCGGG 1 cut(s) 305
XmnI GAANNNNTTC 1 cut(s) 314
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.