RchiOBHm_Chr6g0265321

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000342
Physical Location & Seq
Forward (+)
20910620 .. 20911782
1163 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23796

Sequence Viewer

Length: 906 bp
ATGCCGAAATTGGCACCAACAATAGCCATCATCCAGAACACGTTTCGGAAGCTCAACCTTCCCCCGCCATCCCTCCAAGCATTCTTGAATGACCTTCCCCGGAACGATTTCAACACGGTGTTTAGGTCACTGCCTGGCTTCTATAACAAGCTCGATGAAGAACATGAGAACAAGTCGGGTCCTTGTTTCATTGCAGCAATGCCTGGTTCCTTTTATGGGAGGCTCTTCCCTGACAACTCTCTCCACTTTGTTCATTCTTCTTGTGCTCTCATGTGGATCTCTGAGGTCCCAAAAGGTTTGGTGACGAAAGGAGGAGAGGGACTGAACAAGGGGAACATATATATAGCCAAGACAAGCTCACCCGCTGTGTTTAATGAATACTTTGAGCAATTCAAAAGGGACTTCAGAGTCTTTCTGTGGTCTCGGGCACAAGAGCTAGTCCCGGGAGGTAGTATGGTCCTCACAACAATGGGCAGCATAAATAGCAAAGATCCCCTCTGCATTTGGGAATTTGTCGGATTAAAACTCCATGACATGGTTTTAGATGGTTTGATTGAAGAGGAAAAATTGGACACATTCAATATGCCATACTACATACCAACAACGGATGAGGTGAAAGAGGTTGTCGAGGCTGAAGGTTCTTTTACCCTGCAAAACCTCGAAGTTTTCAGAAATGACTGGGACTCTTATATAAAACAAGCAAATTGTGGCTTTGACAAGAATGCGAGGGCAGCAATACTGTCCACTGACATAAGAGCTGTGGGAGAGCCTATTCTGGCCAGCCAATTCGGAGAGGAAGCCATGGACGATTTGTTTCGCAGGTTTGAAGAAGATGTTCTTGATCACATGGAAAAGGAGAAGTGCCAGTTCATCAACCTGGTTATCTCGTTAACTAAGAAGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

301

Amino Acids

34.25

Weight (kDa)

5.12

Isoelectric Point (pI)

47.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 8 - 299 1.4e-103 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 407
Acc36I ACCTGC 1 cut(s) 810
AccB1I GGYRCC 1 cut(s) 13
AccB7I CCANNNNNTGG 1 cut(s) 535
AciI CCGC 2 cut(s) 65, 363
AclWI GGATC 2 cut(s) 284, 485
AcoI YGGCCR 1 cut(s) 777
AcsI RAATTY 1 cut(s) 509
AcuI CTGAAG 2 cut(s) 388, 654
AfiI CCNNNNNNNGG 2 cut(s) 216, 535
AflIII ACRYGT 1 cut(s) 39
AgsI TTSAA 6 cut(s) 88, 112, 394, 557, 580, 827
AjnI CCWGG 3 cut(s) 133, 202, 876
AluBI AGCT 5 cut(s) 52, 151, 357, 436, 758
AluI AGCT 5 cut(s) 52, 151, 357, 436, 758
Alw21I GWGCWC 1 cut(s) 268
Alw26I GTCTC 1 cut(s) 426
AlwI GGATC 2 cut(s) 284, 485
Ama87I CYCGRG 2 cut(s) 423, 442
AoxI GGCC 1 cut(s) 777
ApeKI GCWGC 3 cut(s) 194, 474, 731
ApoI RAATTY 1 cut(s) 509
Asp700I GAANNNNTTC 2 cut(s) 107, 834
AspS9I GGNCC 3 cut(s) 179, 286, 457
AsuC2I CCSGG 3 cut(s) 100, 443, 444
AsuHPI GGTGA 3 cut(s) 313, 351, 625
AvaI CYCGRG 2 cut(s) 423, 442
AvaII GGWCC 3 cut(s) 179, 286, 457
BaeGI GKGCMC 1 cut(s) 430
BalI TGGCCA 1 cut(s) 779
BanI GGYRCC 1 cut(s) 13
Bbv12I GWGCWC 1 cut(s) 268
BbvI GCAGC 3 cut(s) 206, 486, 743
BccI CCATC 3 cut(s) 35, 76, 539
BciT130I CCWGG 3 cut(s) 135, 204, 878
BclI TGATCA 1 cut(s) 841
BcnI CCSGG 3 cut(s) 100, 443, 444
BcoDI GTCTC 1 cut(s) 426
BfaI CTAG 1 cut(s) 437
BfuAI ACCTGC 1 cut(s) 810
BisI GCNGC 3 cut(s) 195, 475, 732
BlsI GCNGC 3 cut(s) 196, 476, 733
Bme1390I CCNGG 6 cut(s) 100, 135, 204, 443, 444, 878
Bme18I GGWCC 3 cut(s) 179, 286, 457
BmeT110I CYCGRG 2 cut(s) 423, 442
BmgT120I GGNCC 3 cut(s) 179, 286, 457
BmiI GGNNCC 4 cut(s) 15, 180, 208, 288
BmrFI CCNGG 6 cut(s) 100, 135, 204, 443, 444, 878
BmrI ACTGGG 1 cut(s) 688
BmuI ACTGGG 1 cut(s) 688
BpuMI CCSGG 3 cut(s) 100, 443, 444
BsaI GGTCTC 1 cut(s) 426
BsaJI CCNNGG 3 cut(s) 98, 442, 801
Bsc4I CCNNNNNNNGG 2 cut(s) 216, 535
Bse1I ACTGG 2 cut(s) 683, 865
Bse3DI GCAATG 2 cut(s) 189, 204
BseBI CCWGG 3 cut(s) 135, 204, 878
BseDI CCNNGG 3 cut(s) 98, 442, 801
BseGI GGATG 3 cut(s) 30, 68, 613
BseLI CCNNNNNNNGG 2 cut(s) 216, 535
BseMI GCAATG 2 cut(s) 189, 204
BseMII CTCAG 1 cut(s) 273
BseNI ACTGG 2 cut(s) 683, 865
BseRI GAGGAG 1 cut(s) 327
BseSI GKGCMC 1 cut(s) 430
BseXI GCAGC 3 cut(s) 206, 486, 743
BshFI GGCC 1 cut(s) 779
BshNI GGYRCC 1 cut(s) 13
BsiHKAI GWGCWC 1 cut(s) 268
BsiHKCI CYCGRG 2 cut(s) 423, 442
BsiSI CCGG 2 cut(s) 100, 443
BslFI GGGAC 5 cut(s) 272, 333, 413, 425, 695
BslI CCNNNNNNNGG 2 cut(s) 216, 535
BsmAI GTCTC 1 cut(s) 426
BsmFI GGGAC 5 cut(s) 272, 333, 413, 425, 695
BsmI GAATGC 2 cut(s) 80, 727
BsnI GGCC 1 cut(s) 779
Bso31I GGTCTC 1 cut(s) 426
BsoBI CYCGRG 2 cut(s) 423, 442
Bsp1286I GDGCHC 2 cut(s) 268, 430
Bsp143I GATC 3 cut(s) 276, 490, 841
Bsp19I CCATGG 1 cut(s) 801
BspACI CCGC 2 cut(s) 65, 363
BspANI GGCC 1 cut(s) 779
BspCNI CTCAG 1 cut(s) 274
BspLI GGNNCC 4 cut(s) 15, 180, 208, 288
BspMI ACCTGC 1 cut(s) 810
BspPI GGATC 2 cut(s) 284, 485
BspQI GCTCTTC 1 cut(s) 230
BspT107I GGYRCC 1 cut(s) 13
BspTNI GGTCTC 1 cut(s) 426
BsrDI GCAATG 2 cut(s) 189, 204
BsrI ACTGG 2 cut(s) 683, 865
BssECI CCNNGG 3 cut(s) 98, 442, 801
BssMI GATC 3 cut(s) 276, 490, 841
BssT1I CCWWGG 1 cut(s) 801
Bst2UI CCWGG 3 cut(s) 135, 204, 878
Bst4CI ACNGT 2 cut(s) 118, 741
Bst6I CTCTTC 2 cut(s) 230, 552
BstC8I GCNNGC 1 cut(s) 781
BstDEI CTNAG 2 cut(s) 282, 894
BstDSI CCRYGG 1 cut(s) 801
BstF5I GGATG 3 cut(s) 30, 68, 613
BstKTI GATC 3 cut(s) 279, 493, 844
BstMAI GTCTC 1 cut(s) 426
BstMBI GATC 3 cut(s) 276, 490, 841
BstMWI GCNNNNNNNGC 2 cut(s) 483, 731
BstNI CCWGG 3 cut(s) 135, 204, 878
BstSCI CCNGG 6 cut(s) 98, 133, 202, 441, 442, 876
BstSLI GKGCMC 1 cut(s) 430
BstV1I GCAGC 3 cut(s) 206, 486, 743
BstX2I RGATCY 2 cut(s) 276, 490
BstYI RGATCY 2 cut(s) 276, 490
BsuRI GGCC 1 cut(s) 779
BtgI CCRYGG 1 cut(s) 801
BtsCI GGATG 3 cut(s) 30, 68, 613
BtsI GCAGTG 1 cut(s) 128
BtsIMutI CAGTG 2 cut(s) 128, 744
BveI ACCTGC 1 cut(s) 810
Cac8I GCNNGC 1 cut(s) 781
Cfr13I GGNCC 3 cut(s) 179, 286, 457
Cfr9I CCCGGG 1 cut(s) 442
CsiI ACCWGGT 1 cut(s) 876
CviAII CATG 6 cut(s) 164, 271, 530, 535, 802, 847
DdeI CTNAG 2 cut(s) 282, 894
DpnI GATC 3 cut(s) 278, 492, 843
DpnII GATC 3 cut(s) 276, 490, 841
DrdI GACNNNNNNGTC 1 cut(s) 407
DseDI GACNNNNNNGTC 1 cut(s) 407
EaeI YGGCCR 1 cut(s) 777
Eam1104I CTCTTC 2 cut(s) 230, 552
EarI CTCTTC 2 cut(s) 230, 552
Eco130I CCWWGG 1 cut(s) 801
Eco31I GGTCTC 1 cut(s) 426
Eco47I GGWCC 3 cut(s) 179, 286, 457
Eco57I CTGAAG 2 cut(s) 388, 654
Eco88I CYCGRG 2 cut(s) 423, 442
EcoO109I RGGNCCY 2 cut(s) 179, 286
EcoRII CCWGG 3 cut(s) 133, 202, 876
EcoT14I CCWWGG 1 cut(s) 801
ErhI CCWWGG 1 cut(s) 801
FaeI CATG 6 cut(s) 167, 274, 533, 538, 805, 850
FalI AAGNNNNNCTT 2 cut(s) 822, 854
FaqI GGGAC 5 cut(s) 272, 333, 413, 425, 695
FatI CATG 6 cut(s) 163, 270, 529, 534, 801, 846
FauI CCCGC 2 cut(s) 72, 370
FbaI TGATCA 1 cut(s) 841
Fnu4HI GCNGC 3 cut(s) 195, 475, 732
FokI GGATG 3 cut(s) 17, 55, 620
Fsp4HI GCNGC 3 cut(s) 195, 475, 732
FspBI CTAG 1 cut(s) 437
GluI GCNGC 3 cut(s) 195, 475, 732
HaeIII GGCC 1 cut(s) 779
HapII CCGG 2 cut(s) 100, 443
Hin1II CATG 6 cut(s) 167, 274, 533, 538, 805, 850
HincII GTYRAC 1 cut(s) 891
HindII GTYRAC 1 cut(s) 891
HinfI GANTC 2 cut(s) 408, 683
HpaI GTTAAC 1 cut(s) 891
HpaII CCGG 2 cut(s) 100, 443
HphI GGTGA 3 cut(s) 313, 351, 625
Hpy166II GTNNAC 2 cut(s) 744, 891
Hpy188I TCNGA 6 cut(s) 48, 283, 407, 518, 671, 791
Hpy188III TCNNGA 3 cut(s) 34, 85, 839
Hpy8I GTNNAC 2 cut(s) 744, 891
HpyAV CCTTC 3 cut(s) 68, 104, 629
HpyCH4III ACNGT 2 cut(s) 118, 741
HpyCH4IV ACGT 1 cut(s) 41
HpyCH4V TGCA 3 cut(s) 194, 501, 652
HpyF10VI GCNNNNNNNGC 2 cut(s) 483, 731
HpyF3I CTNAG 2 cut(s) 282, 894
HpySE526I ACGT 1 cut(s) 41
Hsp92II CATG 6 cut(s) 167, 274, 533, 538, 805, 850
Ksp22I TGATCA 1 cut(s) 841
KspAI GTTAAC 1 cut(s) 891
Kzo9I GATC 3 cut(s) 276, 490, 841
LguI GCTCTTC 1 cut(s) 230
Lsp1109I GCAGC 3 cut(s) 206, 486, 743
MabI ACCWGGT 1 cut(s) 876
MaeI CTAG 1 cut(s) 437
MaeII ACGT 1 cut(s) 41
MaeIII GTNAC 2 cut(s) 126, 301
MalI GATC 3 cut(s) 278, 492, 843
MboI GATC 3 cut(s) 276, 490, 841
MboII GAAGA 6 cut(s) 170, 217, 249, 569, 839, 842
MflI RGATCY 2 cut(s) 276, 490
MhlI GDGCHC 2 cut(s) 268, 430
MlsI TGGCCA 1 cut(s) 779
MluCI AATT 6 cut(s) 8, 389, 509, 566, 703, 785
MluNI TGGCCA 1 cut(s) 779
MlyI GAGTC 2 cut(s) 417, 677
MmeI TCCRAC 1 cut(s) 496
Mox20I TGGCCA 1 cut(s) 779
MroXI GAANNNNTTC 2 cut(s) 107, 834
MscI TGGCCA 1 cut(s) 779
MseI TTAA 3 cut(s) 372, 521, 890
MslI CAYNNNNRTG 1 cut(s) 467
Msp20I TGGCCA 1 cut(s) 779
MspA1I CMGCKG 1 cut(s) 365
MspI CCGG 2 cut(s) 100, 443
MspR9I CCNGG 6 cut(s) 100, 135, 204, 443, 444, 878
Mva1269I GAATGC 2 cut(s) 80, 727
MvaI CCWGG 3 cut(s) 135, 204, 878
MwoI GCNNNNNNNGC 2 cut(s) 483, 731
NciI CCSGG 3 cut(s) 100, 443, 444
NcoI CCATGG 1 cut(s) 801
NdeII GATC 3 cut(s) 276, 490, 841
NlaIII CATG 6 cut(s) 167, 274, 533, 538, 805, 850
NlaIV GGNNCC 4 cut(s) 15, 180, 208, 288
NmuCI GTSAC 2 cut(s) 126, 301
PciSI GCTCTTC 1 cut(s) 230
PctI GAATGC 2 cut(s) 80, 727
PdmI GAANNNNTTC 2 cut(s) 107, 834
PflMI CCANNNNNTGG 1 cut(s) 535
PkrI GCNGC 3 cut(s) 196, 476, 733
PleI GAGTC 2 cut(s) 416, 677
PpsI GAGTC 2 cut(s) 416, 677
PpuMI RGGWCCY 2 cut(s) 179, 286
Psp5II RGGWCCY 2 cut(s) 179, 286
Psp6I CCWGG 3 cut(s) 133, 202, 876
PspGI CCWGG 3 cut(s) 133, 202, 876
PspN4I GGNNCC 4 cut(s) 15, 180, 208, 288
PspPI GGNCC 3 cut(s) 179, 286, 457
PspPPI RGGWCCY 2 cut(s) 179, 286
PsuI RGATCY 2 cut(s) 276, 490
RseI CAYNNNNRTG 1 cut(s) 467
SapI GCTCTTC 1 cut(s) 230
SaqAI TTAA 3 cut(s) 372, 521, 890
SatI GCNGC 3 cut(s) 195, 475, 732
Sau3AI GATC 3 cut(s) 276, 490, 841
Sau96I GGNCC 3 cut(s) 179, 286, 457
SchI GAGTC 2 cut(s) 417, 677
ScrFI CCNGG 6 cut(s) 100, 135, 204, 443, 444, 878
SduI GDGCHC 2 cut(s) 268, 430
SexAI ACCWGGT 1 cut(s) 876
SinI GGWCC 3 cut(s) 179, 286, 457
SmaI CCCGGG 1 cut(s) 444
SmiMI CAYNNNNRTG 1 cut(s) 467
Sse9I AATT 6 cut(s) 8, 389, 509, 566, 703, 785
SsiI CCGC 2 cut(s) 65, 363
SspMI CTAG 1 cut(s) 437
StyD4I CCNGG 6 cut(s) 98, 133, 202, 441, 442, 876
StyI CCWWGG 1 cut(s) 801
TaaI ACNGT 2 cut(s) 118, 741
TaiI ACGT 1 cut(s) 44
TaqI TCGA 3 cut(s) 153, 627, 660
TasI AATT 6 cut(s) 8, 389, 509, 566, 703, 785
Tru1I TTAA 3 cut(s) 372, 521, 890
Tru9I TTAA 3 cut(s) 372, 521, 890
TscAI CASTG 2 cut(s) 135, 751
TseFI GTSAC 2 cut(s) 126, 301
TseI GCWGC 3 cut(s) 194, 474, 731
Tsp45I GTSAC 2 cut(s) 126, 301
TspDTI ATGAA 5 cut(s) 171, 178, 242, 390, 859
TspGWI ACGGA 1 cut(s) 620
TspMI CCCGGG 1 cut(s) 442
TspRI CASTG 2 cut(s) 135, 751
Van91I CCANNNNNTGG 1 cut(s) 535
VpaK11BI GGWCC 3 cut(s) 179, 286, 457
XapI RAATTY 1 cut(s) 509
XmaI CCCGGG 1 cut(s) 442
XmnI GAANNNNTTC 2 cut(s) 107, 834
XspI CTAG 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.