Rh1AG061700

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000342
Physical Location & Seq
Reverse (-)
10286691 .. 10288356
1666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG061700.1

Sequence Viewer

Length: 1092 bp
ATGGAGGTGGAGCAAGTCCTTCACATGAATGGCGGATATGGGAGAACAAGCTATTCACACAACTCGCTTCTTCAAAGAGCAGTGATTTCATGGGTGAAGCCCATTTTTGATGCAAGCATAGAGCAGCTGTGTTGCGCCAACCTCCCTGCAGAGTGTTTGAGGATAGCTGACTTGGGATGTTCTTCAGGACCAAACACCCTTTTAGTCGTGTCAAATGTCATCGACATGATCCAGAATACATGTCAAAAATTGAACCATCGACCTCCATCGCTCCAAATATTTTTGAATGATCTTCCCCAAAACGACTTTAACACAGTTTTCAAATCATTGCCAAGCTTCAACAAAAAACTCGAAGAAAAGAAGTGGTCGGAGCCATGCTTCATTGCAGGAATGCCCGGTTCTTTCTATGGCAGGCTCTTTCCTAAGAATTCTATCAACTTTTTTCACTCATCTTACTCTCTGCACTGGATCTCTAAGGTTCCAAAAGGTTTGGTAACAAAAGGAGGACTCAACGAGGGAAACATTTGCACAGCCAAGACAAGCCCACCTTCTGTGTTTAATGAATACTTTGAGCAATTTAAAAACGACTTCACAGTGTTTCTAAGGTCTCGTGCAGAAGAGTTGGTCCCTCAGGGTAGAATGGTCCTCACAATCAGGGGGAGCATAAACAGTCATGAACCCCTCTCTATATTAGAATTTCTTGGATTGAAAATCAATGATATGGTTTTAGAGGGTTTGATTGAAAAGCAAAACTTAGACTACTTCAATATTCCATACTTTGAACCTACAATGGAGGAACTGATGGAGCTGATCGAGACCGAAGGATCCTTTAGGTTGCATGACCATCAAGTTTTTAAACATGATTGGGACTCTTTTATAAAGGAAGCTGATAGTGGTCTCGATAAGAAAGCAAGGGCGGGAATACTCTCCACACACATTAGGTCTGTGGTGGAGCCTCTTCTGGTCAGTCACTTTGGAGAGGGAGTCATGGAAGATTTGTTTCGCAGGTATGAAAAAGATATTCTTGATCACATGGAAAAGGAGAAGTGCCAGTCTATAGATATAGTTCTATCGTTGACAAAGGAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

363

Amino Acids

41.45

Weight (kDa)

5.68

Isoelectric Point (pI)

43.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 39 - 361 4.3e-119 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 878
Acc36I ACCTGC 1 cut(s) 996
AciI CCGC 2 cut(s) 33, 917
AclWI GGATC 4 cut(s) 223, 476, 819, 832
AcsI RAATTY 2 cut(s) 427, 695
AcuI CTGAAG 1 cut(s) 168
AflIII ACRYGT 1 cut(s) 239
AgsI TTSAA 9 cut(s) 74, 253, 286, 322, 340, 709, 743, 766, 782
AluBI AGCT 6 cut(s) 51, 127, 167, 336, 808, 887
AluI AGCT 6 cut(s) 51, 127, 167, 336, 808, 887
Alw26I GTCTC 3 cut(s) 612, 809, 902
AlwI GGATC 4 cut(s) 223, 476, 819, 832
ApeKI GCWGC 1 cut(s) 124
ApoI RAATTY 2 cut(s) 427, 695
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 3 cut(s) 188, 625, 643
AsuC2I CCSGG 1 cut(s) 396
AsuHPI GGTGA 1 cut(s) 106
AvaII GGWCC 3 cut(s) 188, 625, 643
AxyI CCTNAGG 1 cut(s) 630
BamHI GGATCC 1 cut(s) 824
BauI CACGAG 1 cut(s) 609
BbvI GCAGC 1 cut(s) 136
BccI CCATC 4 cut(s) 264, 274, 796, 852
BclI TGATCA 1 cut(s) 1027
BcnI CCSGG 1 cut(s) 396
BcoDI GTCTC 3 cut(s) 612, 809, 902
BfmI CTRYAG 2 cut(s) 147, 1056
BfuAI ACCTGC 1 cut(s) 996
BisI GCNGC 1 cut(s) 125
BlsI GCNGC 1 cut(s) 126
Bme1390I CCNGG 1 cut(s) 396
Bme18I GGWCC 3 cut(s) 188, 625, 643
BmgT120I GGNCC 3 cut(s) 188, 625, 643
BmiI GGNNCC 5 cut(s) 372, 480, 627, 826, 954
BmrFI CCNGG 1 cut(s) 396
BmsI GCATC 1 cut(s) 100
BpuMI CCSGG 1 cut(s) 396
BsaI GGTCTC 3 cut(s) 612, 809, 902
BsaXI ACNNNNNCTCC 2 cut(s) 969, 999
Bse1I ACTGG 2 cut(s) 470, 1051
Bse21I CCTNAGG 1 cut(s) 630
Bse3DI GCAATG 2 cut(s) 326, 381
BseGI GGATG 1 cut(s) 182
BseMI GCAATG 2 cut(s) 326, 381
BseMII CTCAG 1 cut(s) 644
BseNI ACTGG 2 cut(s) 470, 1051
BseXI GCAGC 1 cut(s) 136
BsgI GTGCAG 2 cut(s) 446, 633
BsiSI CCGG 1 cut(s) 396
BslFI GGGAC 2 cut(s) 611, 881
BsmAI GTCTC 3 cut(s) 612, 809, 902
BsmFI GGGAC 2 cut(s) 611, 881
BsmI GAATGC 1 cut(s) 396
Bso31I GGTCTC 3 cut(s) 612, 809, 902
Bsp143I GATC 6 cut(s) 228, 289, 468, 810, 824, 1027
BspACI CCGC 2 cut(s) 33, 917
BspCNI CTCAG 1 cut(s) 643
BspHI TCATGA 1 cut(s) 673
BspLI GGNNCC 5 cut(s) 372, 480, 627, 826, 954
BspMAI CTGCAG 1 cut(s) 151
BspMI ACCTGC 1 cut(s) 996
BspPI GGATC 4 cut(s) 223, 476, 819, 832
BspTNI GGTCTC 3 cut(s) 612, 809, 902
BsrDI GCAATG 2 cut(s) 326, 381
BsrI ACTGG 2 cut(s) 470, 1051
BssMI GATC 6 cut(s) 228, 289, 468, 810, 824, 1027
BssSI CACGAG 1 cut(s) 609
Bst2BI CACGAG 1 cut(s) 609
Bst4CI ACNGT 3 cut(s) 316, 595, 671
Bst6I CTCTTC 2 cut(s) 612, 963
BstC8I GCNNGC 2 cut(s) 115, 413
BstDEI CTNAG 5 cut(s) 423, 474, 602, 630, 754
BstF5I GGATG 1 cut(s) 182
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 6 cut(s) 231, 292, 471, 813, 827, 1030
BstMAI GTCTC 3 cut(s) 612, 809, 902
BstMBI GATC 6 cut(s) 228, 289, 468, 810, 824, 1027
BstNSI RCATGY 1 cut(s) 243
BstSCI CCNGG 1 cut(s) 394
BstSFI CTRYAG 2 cut(s) 147, 1056
BstV1I GCAGC 1 cut(s) 136
BstX2I RGATCY 2 cut(s) 468, 824
BstYI RGATCY 2 cut(s) 468, 824
Bsu36I CCTNAGG 1 cut(s) 630
BtgZI GCGATG 1 cut(s) 252
BtsCI GGATG 1 cut(s) 182
BtsI GCAGTG 1 cut(s) 87
BtsIMutI CAGTG 3 cut(s) 87, 463, 600
BveI ACCTGC 1 cut(s) 996
Cac8I GCNNGC 2 cut(s) 115, 413
CciI TCATGA 1 cut(s) 673
CfoI GCGC 1 cut(s) 137
Cfr13I GGNCC 3 cut(s) 188, 625, 643
DdeI CTNAG 5 cut(s) 423, 474, 602, 630, 754
DpnI GATC 6 cut(s) 230, 291, 470, 812, 826, 1029
DpnII GATC 6 cut(s) 228, 289, 468, 810, 824, 1027
DraI TTTAAA 2 cut(s) 580, 856
Eam1104I CTCTTC 2 cut(s) 612, 963
EarI CTCTTC 2 cut(s) 612, 963
EciI GGCGGA 1 cut(s) 48
Eco31I GGTCTC 3 cut(s) 612, 809, 902
Eco47I GGWCC 3 cut(s) 188, 625, 643
Eco57I CTGAAG 1 cut(s) 168
Eco81I CCTNAGG 1 cut(s) 630
EcoRI GAATTC 1 cut(s) 427
FalI AAGNNNNNCTT 6 cut(s) 532, 564, 737, 769, 1008, 1040
FaqI GGGAC 2 cut(s) 611, 881
FauI CCCGC 1 cut(s) 910
FbaI TGATCA 1 cut(s) 1027
Fnu4HI GCNGC 1 cut(s) 125
FokI GGATG 1 cut(s) 189
Fsp4HI GCNGC 1 cut(s) 125
GlaI GCGC 1 cut(s) 136
GluI GCNGC 1 cut(s) 125
HapII CCGG 1 cut(s) 396
HhaI GCGC 1 cut(s) 137
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HincII GTYRAC 1 cut(s) 1077
HindII GTYRAC 1 cut(s) 1077
HindIII AAGCTT 1 cut(s) 334
HinfI GANTC 3 cut(s) 507, 869, 984
HpaII CCGG 1 cut(s) 396
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 1 cut(s) 1077
Hpy188I TCNGA 1 cut(s) 370
Hpy188III TCNNGA 6 cut(s) 186, 232, 674, 814, 899, 1025
Hpy8I GTNNAC 1 cut(s) 1077
HpyAV CCTTC 3 cut(s) 29, 558, 815
HpyCH4III ACNGT 3 cut(s) 316, 595, 671
HpyCH4V TGCA 7 cut(s) 113, 149, 386, 463, 528, 614, 838
HpyF3I CTNAG 5 cut(s) 423, 474, 602, 630, 754
HspAI GCGC 1 cut(s) 135
Ksp22I TGATCA 1 cut(s) 1027
Kzo9I GATC 6 cut(s) 228, 289, 468, 810, 824, 1027
LmnI GCTCC 6 cut(s) 10, 276, 370, 660, 805, 952
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 1 cut(s) 100
MaeIII GTNAC 2 cut(s) 493, 968
MalI GATC 6 cut(s) 230, 291, 470, 812, 826, 1029
MboI GATC 6 cut(s) 228, 289, 468, 810, 824, 1027
MboII GAAGA 7 cut(s) 62, 174, 284, 365, 629, 950, 1004
MflI RGATCY 2 cut(s) 468, 824
MluCI AATT 4 cut(s) 248, 427, 575, 695
MlyI GAGTC 3 cut(s) 501, 863, 993
MmeI TCCRAC 1 cut(s) 348
MseI TTAA 4 cut(s) 309, 558, 579, 855
MslI CAYNNNNRTG 2 cut(s) 27, 224
MspA1I CMGCKG 1 cut(s) 127
MspI CCGG 1 cut(s) 396
MspR9I CCNGG 1 cut(s) 396
Mva1269I GAATGC 1 cut(s) 396
NciI CCSGG 1 cut(s) 396
NdeII GATC 6 cut(s) 228, 289, 468, 810, 824, 1027
NlaIV GGNNCC 5 cut(s) 372, 480, 627, 826, 954
NmuCI GTSAC 1 cut(s) 968
NspI RCATGY 1 cut(s) 243
PagI TCATGA 1 cut(s) 673
PciI ACATGT 1 cut(s) 239
PctI GAATGC 1 cut(s) 396
PkrI GCNGC 1 cut(s) 126
PleI GAGTC 3 cut(s) 501, 863, 992
PpsI GAGTC 3 cut(s) 501, 863, 992
PscI ACATGT 1 cut(s) 239
PsiI TTATAA 1 cut(s) 878
PspN4I GGNNCC 5 cut(s) 372, 480, 627, 826, 954
PspPI GGNCC 3 cut(s) 188, 625, 643
PstI CTGCAG 1 cut(s) 151
PsuI RGATCY 2 cut(s) 468, 824
PvuII CAGCTG 1 cut(s) 127
RseI CAYNNNNRTG 2 cut(s) 27, 224
SaqAI TTAA 4 cut(s) 309, 558, 579, 855
SatI GCNGC 1 cut(s) 125
Sau3AI GATC 6 cut(s) 228, 289, 468, 810, 824, 1027
Sau96I GGNCC 3 cut(s) 188, 625, 643
SchI GAGTC 3 cut(s) 501, 863, 993
ScrFI CCNGG 1 cut(s) 396
SfaNI GCATC 1 cut(s) 100
SfcI CTRYAG 2 cut(s) 147, 1056
SinI GGWCC 3 cut(s) 188, 625, 643
SmiMI CAYNNNNRTG 2 cut(s) 27, 224
Sse9I AATT 4 cut(s) 248, 427, 575, 695
SsiI CCGC 2 cut(s) 33, 917
SspI AATATT 2 cut(s) 279, 769
StyD4I CCNGG 1 cut(s) 394
TaaI ACNGT 3 cut(s) 316, 595, 671
TaqI TCGA 5 cut(s) 222, 259, 351, 813, 900
TaqII GACCGA 1 cut(s) 833
TasI AATT 4 cut(s) 248, 427, 575, 695
Tru1I TTAA 4 cut(s) 309, 558, 579, 855
Tru9I TTAA 4 cut(s) 309, 558, 579, 855
TscAI CASTG 3 cut(s) 87, 470, 600
TseFI GTSAC 1 cut(s) 968
TseI GCWGC 1 cut(s) 124
Tsp45I GTSAC 1 cut(s) 968
TspDTI ATGAA 6 cut(s) 41, 78, 370, 576, 690, 1026
TspRI CASTG 3 cut(s) 87, 470, 600
VpaK11BI GGWCC 3 cut(s) 188, 625, 643
XapI RAATTY 2 cut(s) 427, 695
XceI RCATGY 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.