Rh3DG067100

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000342
Physical Location & Seq
Forward (+)
4527676 .. 4527978
303 bp
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UTR
Exon/CDS
Intron
Rh3DG067100.1

Sequence Viewer

Length: 303 bp
ATGGAGGAACTGATGGAGCTGATCGAGGCCGAAGGATCCTTTAGGTTGCAGGACCTTCAAGTTTTTAAACATGATTGGGACTCTTTTATAAAGGAAGCTGATAGTGGTCTCGATAAGAAAGCAAGGGCGGGTATATTCTCCACTCACATTAGGTCTGTGGTGGAGCCTTTTCTGGTCAGTCACTTTGGAGAGGGAGTCATGGAAGATTTGTTTCGCAGGTTCGAAAAAGATGTTCTTGATTACATGGAAAAGGAGAAGTGCCAGTCTATCGATATGGTTCTCTCCTTGACAAAGGAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

100

Amino Acids

11.74

Weight (kDa)

4.72

Isoelectric Point (pI)

50.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 1 - 98 5.4e-19 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 89
Acc36I ACCTGC 1 cut(s) 207
AciI CCGC 1 cut(s) 128
AclWI GGATC 2 cut(s) 30, 43
AgsI TTSAA 1 cut(s) 59
AluBI AGCT 2 cut(s) 19, 98
AluI AGCT 2 cut(s) 19, 98
Alw26I GTCTC 1 cut(s) 113
AlwI GGATC 2 cut(s) 30, 43
AoxI GGCC 1 cut(s) 27
AspS9I GGNCC 1 cut(s) 52
AsuII TTCGAA 1 cut(s) 222
AvaII GGWCC 1 cut(s) 52
BamHI GGATCC 1 cut(s) 35
BccI CCATC 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 113
BfuAI ACCTGC 1 cut(s) 207
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 2 cut(s) 37, 165
Bpu14I TTCGAA 1 cut(s) 222
Bsa29I ATCGAT 1 cut(s) 270
BsaI GGTCTC 1 cut(s) 113
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
Bse1I ACTGG 1 cut(s) 262
BseCI ATCGAT 1 cut(s) 270
BseNI ACTGG 1 cut(s) 262
BshFI GGCC 1 cut(s) 29
BshVI ATCGAT 1 cut(s) 270
BslFI GGGAC 1 cut(s) 92
BsmAI GTCTC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 92
BsnI GGCC 1 cut(s) 29
Bso31I GGTCTC 1 cut(s) 113
Bsp119I TTCGAA 1 cut(s) 222
Bsp143I GATC 2 cut(s) 21, 35
BspACI CCGC 1 cut(s) 128
BspANI GGCC 1 cut(s) 29
BspDI ATCGAT 1 cut(s) 270
BspLI GGNNCC 2 cut(s) 37, 165
BspMI ACCTGC 1 cut(s) 207
BspPI GGATC 2 cut(s) 30, 43
BspT104I TTCGAA 1 cut(s) 222
BspTNI GGTCTC 1 cut(s) 113
BsrI ACTGG 1 cut(s) 262
BssMI GATC 2 cut(s) 21, 35
BstBI TTCGAA 1 cut(s) 222
BstKTI GATC 2 cut(s) 24, 38
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 2 cut(s) 21, 35
BstX2I RGATCY 1 cut(s) 35
BstYI RGATCY 1 cut(s) 35
Bsu15I ATCGAT 1 cut(s) 270
BsuRI GGCC 1 cut(s) 29
BsuTUI ATCGAT 1 cut(s) 270
BveI ACCTGC 1 cut(s) 207
Cfr13I GGNCC 1 cut(s) 52
ClaI ATCGAT 1 cut(s) 270
CviAII CATG 3 cut(s) 71, 199, 244
CviJI RGCY 4 cut(s) 19, 29, 98, 166
CviKI_1 RGCY 4 cut(s) 19, 29, 98, 166
DpnI GATC 2 cut(s) 23, 37
DpnII GATC 2 cut(s) 21, 35
DraI TTTAAA 1 cut(s) 67
Eco31I GGTCTC 1 cut(s) 113
Eco47I GGWCC 1 cut(s) 52
EcoO109I RGGNCCY 1 cut(s) 52
FaeI CATG 3 cut(s) 74, 202, 247
FaiI YATR 6 cut(s) 72, 89, 134, 200, 245, 275
FalI AAGNNNNNCTT 2 cut(s) 219, 251
FaqI GGGAC 1 cut(s) 92
FatI CATG 3 cut(s) 70, 198, 243
FauI CCCGC 1 cut(s) 121
HaeIII GGCC 1 cut(s) 29
Hin1II CATG 3 cut(s) 74, 202, 247
HinfI GANTC 2 cut(s) 80, 195
Hpy188III TCNNGA 2 cut(s) 110, 236
HpyAV CCTTC 2 cut(s) 26, 65
HpyCH4V TGCA 1 cut(s) 49
Hsp92II CATG 3 cut(s) 74, 202, 247
Kzo9I GATC 2 cut(s) 21, 35
LmnI GCTCC 2 cut(s) 16, 163
LpnPI CCDG 4 cut(s) 35, 158, 202, 275
MaeIII GTNAC 1 cut(s) 179
MalI GATC 2 cut(s) 23, 37
MboI GATC 2 cut(s) 21, 35
MboII GAAGA 1 cut(s) 215
MflI RGATCY 1 cut(s) 35
MlyI GAGTC 2 cut(s) 74, 204
MnlI CCTC 2 cut(s) 19, 184
MseI TTAA 1 cut(s) 66
NdeII GATC 2 cut(s) 21, 35
NlaIII CATG 3 cut(s) 74, 202, 247
NlaIV GGNNCC 2 cut(s) 37, 165
NmuCI GTSAC 1 cut(s) 179
NspV TTCGAA 1 cut(s) 222
PleI GAGTC 2 cut(s) 74, 203
PpsI GAGTC 2 cut(s) 74, 203
PpuMI RGGWCCY 1 cut(s) 52
PsiI TTATAA 1 cut(s) 89
Psp5II RGGWCCY 1 cut(s) 52
PspN4I GGNNCC 2 cut(s) 37, 165
PspPI GGNCC 1 cut(s) 52
PspPPI RGGWCCY 1 cut(s) 52
PsuI RGATCY 1 cut(s) 35
SaqAI TTAA 1 cut(s) 66
Sau3AI GATC 2 cut(s) 21, 35
Sau96I GGNCC 1 cut(s) 52
SchI GAGTC 2 cut(s) 74, 204
SetI ASST 6 cut(s) 21, 47, 57, 100, 155, 221
SfuI TTCGAA 1 cut(s) 222
SinI GGWCC 1 cut(s) 52
SsiI CCGC 1 cut(s) 128
TaqI TCGA 4 cut(s) 24, 111, 222, 270
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TseFI GTSAC 1 cut(s) 179
Tsp45I GTSAC 1 cut(s) 179
VpaK11BI GGWCC 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.