Rroxscaffold_159G00432850

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000159
OG0000342
Physical Location & Seq
Reverse (-)
499006 .. 502221
3216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_159G00432850.1

Sequence Viewer

Length: 417 bp
ATGGTCCTCACAACCAGGGGGAGAATAAATAGTCATGAACCAACTTTATTTGAAATTCTTGGATTGAAAATCAATGATATGGTTTTAGAGGGTTTGATTGAAAAGAAAAACTTAGACTACTTCAATGTTCCATACTATGAACCAACAATGGAGGAACTGATGGAGCTGATCAAGACCGAAGGATCCTTTAGGTTGCGGGACCATCAAGTTTTTAAACATGATTGGGACTCTTTTATAAAGGAAGCTGATAGTGGTCTCGATAAGAAAGCAAGGGCGGGTATACTCTCCACTCACATTAGGTCTGTGGTGGAGCCTCTTCGATCAGTCACTTTGGAGAGGGACTCATGGAAGATTTGTTTTGCAGGTTTGAAAAAGATGTTCTTGATCACATGGAAAAGGAGAAGTGCCAGTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

138

Amino Acids

16.13

Weight (kDa)

8.69

Isoelectric Point (pI)

46.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 1 - 122 6.2e-21 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 236
Acc36I ACCTGC 1 cut(s) 353
AccI GTMKAC 1 cut(s) 280
AciI CCGC 2 cut(s) 196, 275
AclWI GGATC 2 cut(s) 177, 190
AcsI RAATTY 1 cut(s) 54
AgsI TTSAA 5 cut(s) 53, 67, 101, 124, 370
AjnI CCWGG 1 cut(s) 14
AluBI AGCT 2 cut(s) 166, 245
AluI AGCT 2 cut(s) 166, 245
Alw26I GTCTC 1 cut(s) 260
AlwI GGATC 2 cut(s) 177, 190
ApoI RAATTY 1 cut(s) 54
AspS9I GGNCC 2 cut(s) 4, 199
AvaII GGWCC 2 cut(s) 4, 199
BamHI GGATCC 1 cut(s) 182
BccI CCATC 2 cut(s) 154, 210
BciT130I CCWGG 1 cut(s) 16
BclI TGATCA 2 cut(s) 168, 384
BcoDI GTCTC 1 cut(s) 260
BfmI CTRYAG 1 cut(s) 413
BfuAI ACCTGC 1 cut(s) 353
Bme1390I CCNGG 1 cut(s) 16
Bme18I GGWCC 2 cut(s) 4, 199
BmgT120I GGNCC 2 cut(s) 4, 199
BmiI GGNNCC 3 cut(s) 184, 200, 312
BmrFI CCNGG 1 cut(s) 16
BplI GAGNNNNNCTC 2 cut(s) 326, 358
BsaI GGTCTC 1 cut(s) 260
BsaJI CCNNGG 1 cut(s) 15
Bse1I ACTGG 1 cut(s) 408
BseBI CCWGG 1 cut(s) 16
BseDI CCNNGG 1 cut(s) 15
BseNI ACTGG 1 cut(s) 408
BslFI GGGAC 3 cut(s) 212, 239, 353
BsmAI GTCTC 1 cut(s) 260
BsmFI GGGAC 3 cut(s) 212, 239, 353
Bso31I GGTCTC 1 cut(s) 260
Bsp143I GATC 4 cut(s) 168, 182, 320, 384
BspACI CCGC 2 cut(s) 196, 275
BspHI TCATGA 1 cut(s) 34
BspLI GGNNCC 3 cut(s) 184, 200, 312
BspMI ACCTGC 1 cut(s) 353
BspPI GGATC 2 cut(s) 177, 190
BspTNI GGTCTC 1 cut(s) 260
BsrI ACTGG 1 cut(s) 408
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 4 cut(s) 168, 182, 320, 384
BssNAI GTATAC 1 cut(s) 281
Bst1107I GTATAC 1 cut(s) 281
Bst2UI CCWGG 1 cut(s) 16
Bst6I CTCTTC 1 cut(s) 321
BstDEI CTNAG 1 cut(s) 112
BstKTI GATC 4 cut(s) 171, 185, 323, 387
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 4 cut(s) 168, 182, 320, 384
BstNI CCWGG 1 cut(s) 16
BstSCI CCNGG 1 cut(s) 14
BstSFI CTRYAG 1 cut(s) 413
BstX2I RGATCY 1 cut(s) 182
BstYI RGATCY 1 cut(s) 182
BstZ17I GTATAC 1 cut(s) 281
BveI ACCTGC 1 cut(s) 353
CciI TCATGA 1 cut(s) 34
Cfr13I GGNCC 2 cut(s) 4, 199
CviAII CATG 4 cut(s) 35, 218, 345, 390
CviJI RGCY 3 cut(s) 166, 245, 313
CviKI_1 RGCY 3 cut(s) 166, 245, 313
DdeI CTNAG 1 cut(s) 112
DpnI GATC 4 cut(s) 170, 184, 322, 386
DpnII GATC 4 cut(s) 168, 182, 320, 384
DraI TTTAAA 1 cut(s) 214
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
Eco31I GGTCTC 1 cut(s) 260
Eco47I GGWCC 2 cut(s) 4, 199
EcoRII CCWGG 1 cut(s) 14
FaeI CATG 4 cut(s) 38, 221, 348, 393
FalI AAGNNNNNCTT 4 cut(s) 95, 127, 365, 397
FaqI GGGAC 3 cut(s) 212, 239, 353
FatI CATG 4 cut(s) 34, 217, 344, 389
FauI CCCGC 2 cut(s) 189, 268
FbaI TGATCA 2 cut(s) 168, 384
FblI GTMKAC 1 cut(s) 280
Hin1II CATG 4 cut(s) 38, 221, 348, 393
HinfI GANTC 2 cut(s) 227, 341
Hpy166II GTNNAC 1 cut(s) 281
Hpy188III TCNNGA 4 cut(s) 35, 172, 257, 382
Hpy8I GTNNAC 1 cut(s) 281
HpyAV CCTTC 1 cut(s) 173
HpyCH4V TGCA 1 cut(s) 362
HpyF3I CTNAG 1 cut(s) 112
Hsp92II CATG 4 cut(s) 38, 221, 348, 393
Ksp22I TGATCA 2 cut(s) 168, 384
Kzo9I GATC 4 cut(s) 168, 182, 320, 384
LmnI GCTCC 2 cut(s) 163, 310
LpnPI CCDG 2 cut(s) 28, 348
MaeIII GTNAC 1 cut(s) 325
MalI GATC 4 cut(s) 170, 184, 322, 386
MboI GATC 4 cut(s) 168, 182, 320, 384
MboII GAAGA 2 cut(s) 308, 361
MflI RGATCY 1 cut(s) 182
MluCI AATT 1 cut(s) 54
MlyI GAGTC 2 cut(s) 221, 335
MnlI CCTC 5 cut(s) 17, 82, 145, 324, 330
MseI TTAA 1 cut(s) 213
MspR9I CCNGG 1 cut(s) 16
MvaI CCWGG 1 cut(s) 16
NdeII GATC 4 cut(s) 168, 182, 320, 384
NlaIII CATG 4 cut(s) 38, 221, 348, 393
NlaIV GGNNCC 3 cut(s) 184, 200, 312
NmuCI GTSAC 1 cut(s) 325
PagI TCATGA 1 cut(s) 34
PleI GAGTC 2 cut(s) 221, 335
PpsI GAGTC 2 cut(s) 221, 335
PsiI TTATAA 1 cut(s) 236
Psp6I CCWGG 1 cut(s) 14
PspGI CCWGG 1 cut(s) 14
PspN4I GGNNCC 3 cut(s) 184, 200, 312
PspPI GGNCC 2 cut(s) 4, 199
PsuI RGATCY 1 cut(s) 182
SaqAI TTAA 1 cut(s) 213
Sau3AI GATC 4 cut(s) 168, 182, 320, 384
Sau96I GGNCC 2 cut(s) 4, 199
SchI GAGTC 2 cut(s) 221, 335
ScrFI CCNGG 1 cut(s) 16
SetI ASST 5 cut(s) 168, 194, 247, 302, 367
SfcI CTRYAG 1 cut(s) 413
SinI GGWCC 2 cut(s) 4, 199
Sse9I AATT 1 cut(s) 54
SsiI CCGC 2 cut(s) 196, 275
StyD4I CCNGG 1 cut(s) 14
TaqI TCGA 2 cut(s) 258, 319
TaqII GACCGA 1 cut(s) 191
TasI AATT 1 cut(s) 54
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TseFI GTSAC 1 cut(s) 325
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 2 cut(s) 51, 153
VpaK11BI GGWCC 2 cut(s) 4, 199
XapI RAATTY 1 cut(s) 54
XmiI GTMKAC 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.