Rh1CG064100

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000342
Physical Location & Seq
Reverse (-)
12733250 .. 12760161
26912 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG064100.1

Sequence Viewer

Length: 1107 bp
ATGATTTTGATGGGCAGAGTGAGTAACAGAGGTGTTGATAGGCAGAATTTTAAGGGGCCTAAAAGAGAAAGATTTGGAAATGGTGGTAGGAGAAACTCTTTTGGTGACGATTTTTATATATCTAAACAAGTATCTCGTGGTAATAACAGAGGATTTCGGGAAAACTACTTTGATGGGCACAGAATGAGTAACCGTGGCTTTGATAAACACGATTTTAAGGGACATAAAAGAGAAGGATTTGGAAAGCAGCAGCGTGAAAGATTTAATAATGATAGGGATACGGACAGGGACTTTGGGAAGAATCCCGACGACTCGATCTTTGTCACGGTCAATTGCCCCGACGAGGCCCGGCCTCGGCTACGACCTTTGCATAATTGTGCTCCAGTTCGGCCTTTACATTACCAAAGGAGGGATGTAATAGGTGAAGGGAAACAAATGGAGGAAATCCTGATATTAAGAGCATCTTTGATCATATTGGTGGAATGCCTGCAGGTTCCAAAAGGTTTGGTAACAAAAGGAGGACTCAACGAGGGAAACATTTGCACAGCCAAGACAAGCCCACCTTCTGTGTTTAATGAATACTTTGAGCAATTTAAAAACGACTTCACAGTGTTTCTAAGGTCTCGTGCAGAAGAGTTGGTCCCTCAGGGTAGAATGGTCCTCACATTCAGGGGGAGCATAAACAGTCATGAACCCCTCTCTATATTAGAATTTCTTGGATTGAAAATCAATGATATGGTTTTAGAGGGTTTGATTGAAAAGCAAAACTTAGACTACTTCAATATTCCATACTATGAAGCTACAATGGAGGAACTGATGGAGCTGATCGAGACCGAAGGATCCTTTAGGGTGCATGACCATCAAGTTTTTAAACATGATTGGGACTCTTTTATAAAGGAAGCTGATAGTGGTCTCGATAAGAAAGCAAGGGCGGGAATACTCTCCACTCACATTAGGTCTGTGGTGGAGCCTCTTCTGGTCAGTCACTTTGGAGAGGGAGTCATGGAAGATTTGTTTCGCAGGTATGAAAAAGATGTTCTTGATCACATGGAAAAGGAGAAGTGCCAGTCTATAGATATAGTTCTATCGTTGACAAAGGAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

368

Amino Acids

42.69

Weight (kDa)

6.66

Isoelectric Point (pI)

46.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 164 - 366 1.3e-55 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 893
Acc36I ACCTGC 2 cut(s) 481, 1011
AciI CCGC 1 cut(s) 932
AclWI GGATC 2 cut(s) 834, 847
AcsI RAATTY 2 cut(s) 46, 710
AfiI CCNNNNNNNGG 3 cut(s) 343, 354, 409
AgsI TTSAA 3 cut(s) 724, 758, 781
AluBI AGCT 3 cut(s) 800, 823, 902
AluI AGCT 3 cut(s) 800, 823, 902
Alw21I GWGCWC 1 cut(s) 382
Alw26I GTCTC 3 cut(s) 627, 824, 917
AlwI GGATC 2 cut(s) 834, 847
AoxI GGCC 4 cut(s) 56, 345, 350, 389
ApeKI GCWGC 2 cut(s) 247, 250
ApoI RAATTY 2 cut(s) 46, 710
ArsI GACNNNNNNTTYG 4 cut(s) 275, 302, 307, 334
AspS9I GGNCC 4 cut(s) 56, 346, 640, 658
AsuC2I CCSGG 1 cut(s) 349
AsuHPI GGTGA 2 cut(s) 116, 434
AvaII GGWCC 2 cut(s) 640, 658
AxyI CCTNAGG 1 cut(s) 645
BaeGI GKGCMC 1 cut(s) 180
BamHI GGATCC 1 cut(s) 839
BauI CACGAG 2 cut(s) 135, 624
Bbv12I GWGCWC 1 cut(s) 382
BbvI GCAGC 2 cut(s) 259, 262
BccI CCATC 4 cut(s) 4, 167, 811, 867
BciVI GTATCC 1 cut(s) 271
BclI TGATCA 2 cut(s) 468, 1042
BcnI CCSGG 1 cut(s) 349
BcoDI GTCTC 3 cut(s) 627, 824, 917
BfmI CTRYAG 2 cut(s) 488, 1071
BfuAI ACCTGC 2 cut(s) 481, 1011
BfuI GTATCC 1 cut(s) 271
BisI GCNGC 2 cut(s) 248, 251
BlsI GCNGC 2 cut(s) 249, 252
Bme1390I CCNGG 1 cut(s) 349
Bme18I GGWCC 2 cut(s) 640, 658
BmgT120I GGNCC 4 cut(s) 56, 346, 640, 658
BmiI GGNNCC 5 cut(s) 57, 495, 642, 841, 969
BmrFI CCNGG 1 cut(s) 349
BmsI GCATC 1 cut(s) 470
BpmI CTGGAG 1 cut(s) 366
BpuMI CCSGG 1 cut(s) 349
BsaI GGTCTC 3 cut(s) 627, 824, 917
BsaJI CCNNGG 2 cut(s) 193, 353
BsaXI ACNNNNNCTCC 2 cut(s) 984, 1014
Bsc4I CCNNNNNNNGG 3 cut(s) 343, 354, 409
Bse1I ACTGG 2 cut(s) 383, 1066
Bse21I CCTNAGG 1 cut(s) 645
BseDI CCNNGG 2 cut(s) 193, 353
BseGI GGATG 1 cut(s) 418
BseLI CCNNNNNNNGG 3 cut(s) 343, 354, 409
BseMII CTCAG 1 cut(s) 659
BseNI ACTGG 2 cut(s) 383, 1066
BseSI GKGCMC 1 cut(s) 180
BseXI GCAGC 2 cut(s) 259, 262
BsgI GTGCAG 1 cut(s) 648
BshFI GGCC 4 cut(s) 58, 347, 352, 391
BsiHKAI GWGCWC 1 cut(s) 382
BsiSI CCGG 1 cut(s) 349
BslFI GGGAC 4 cut(s) 234, 302, 626, 896
BslI CCNNNNNNNGG 3 cut(s) 343, 354, 409
BsmAI GTCTC 3 cut(s) 627, 824, 917
BsmFI GGGAC 4 cut(s) 234, 302, 626, 896
BsmI GAATGC 1 cut(s) 488
BsnI GGCC 4 cut(s) 58, 347, 352, 391
Bso31I GGTCTC 3 cut(s) 627, 824, 917
Bsp1286I GDGCHC 2 cut(s) 180, 382
Bsp143I GATC 5 cut(s) 315, 468, 825, 839, 1042
BspACI CCGC 1 cut(s) 932
BspANI GGCC 4 cut(s) 58, 347, 352, 391
BspCNI CTCAG 1 cut(s) 658
BspHI TCATGA 1 cut(s) 688
BspLI GGNNCC 5 cut(s) 57, 495, 642, 841, 969
BspMAI CTGCAG 1 cut(s) 492
BspMI ACCTGC 2 cut(s) 481, 1011
BspPI GGATC 2 cut(s) 834, 847
BspTNI GGTCTC 3 cut(s) 627, 824, 917
BsrI ACTGG 2 cut(s) 383, 1066
BssECI CCNNGG 2 cut(s) 193, 353
BssMI GATC 5 cut(s) 315, 468, 825, 839, 1042
BssSI CACGAG 2 cut(s) 135, 624
Bst2BI CACGAG 2 cut(s) 135, 624
Bst4CI ACNGT 4 cut(s) 194, 328, 610, 686
Bst6I CTCTTC 2 cut(s) 627, 978
BstC8I GCNNGC 1 cut(s) 488
BstDEI CTNAG 3 cut(s) 617, 645, 769
BstDSI CCRYGG 1 cut(s) 193
BstF5I GGATG 1 cut(s) 418
BstKTI GATC 5 cut(s) 318, 471, 828, 842, 1045
BstMAI GTCTC 3 cut(s) 627, 824, 917
BstMBI GATC 5 cut(s) 315, 468, 825, 839, 1042
BstSCI CCNGG 1 cut(s) 347
BstSFI CTRYAG 2 cut(s) 488, 1071
BstSLI GKGCMC 1 cut(s) 180
BstV1I GCAGC 2 cut(s) 259, 262
BstX2I RGATCY 1 cut(s) 839
BstYI RGATCY 1 cut(s) 839
Bsu36I CCTNAGG 1 cut(s) 645
BsuI GTATCC 1 cut(s) 271
BsuRI GGCC 4 cut(s) 58, 347, 352, 391
BtgI CCRYGG 1 cut(s) 193
BtsCI GGATG 1 cut(s) 418
BtsIMutI CAGTG 1 cut(s) 615
BveI ACCTGC 2 cut(s) 481, 1011
Cac8I GCNNGC 1 cut(s) 488
CciI TCATGA 1 cut(s) 688
Cfr13I GGNCC 4 cut(s) 56, 346, 640, 658
CviAII CATG 5 cut(s) 689, 854, 875, 1003, 1048
DdeI CTNAG 3 cut(s) 617, 645, 769
DpnI GATC 5 cut(s) 317, 470, 827, 841, 1044
DpnII GATC 5 cut(s) 315, 468, 825, 839, 1042
DraI TTTAAA 2 cut(s) 595, 871
Eam1104I CTCTTC 2 cut(s) 627, 978
EarI CTCTTC 2 cut(s) 627, 978
Eco31I GGTCTC 3 cut(s) 627, 824, 917
Eco47I GGWCC 2 cut(s) 640, 658
Eco81I CCTNAGG 1 cut(s) 645
EcoO109I RGGNCCY 1 cut(s) 56
FaeI CATG 5 cut(s) 692, 857, 878, 1006, 1051
FalI AAGNNNNNCTT 8 cut(s) 448, 480, 547, 579, 752, 784, 1023, 1055
FaqI GGGAC 4 cut(s) 234, 302, 626, 896
FatI CATG 5 cut(s) 688, 853, 874, 1002, 1047
FauI CCCGC 1 cut(s) 925
FbaI TGATCA 2 cut(s) 468, 1042
Fnu4HI GCNGC 2 cut(s) 248, 251
FokI GGATG 1 cut(s) 425
Fsp4HI GCNGC 2 cut(s) 248, 251
GluI GCNGC 2 cut(s) 248, 251
GsuI CTGGAG 1 cut(s) 366
HaeIII GGCC 4 cut(s) 58, 347, 352, 391
HapII CCGG 1 cut(s) 349
Hin1II CATG 5 cut(s) 692, 857, 878, 1006, 1051
HincII GTYRAC 1 cut(s) 1092
HindII GTYRAC 1 cut(s) 1092
HinfI GANTC 5 cut(s) 301, 311, 522, 884, 999
HpaII CCGG 1 cut(s) 349
HphI GGTGA 2 cut(s) 116, 434
Hpy166II GTNNAC 1 cut(s) 1092
Hpy188III TCNNGA 7 cut(s) 158, 305, 448, 689, 829, 914, 1040
Hpy8I GTNNAC 1 cut(s) 1092
Hpy99I CGWCG 2 cut(s) 311, 344
HpyAV CCTTC 4 cut(s) 227, 419, 573, 830
HpyCH4III ACNGT 4 cut(s) 194, 328, 610, 686
HpyCH4V TGCA 5 cut(s) 370, 490, 543, 629, 853
HpyF3I CTNAG 3 cut(s) 617, 645, 769
Hsp92II CATG 5 cut(s) 692, 857, 878, 1006, 1051
Ksp22I TGATCA 2 cut(s) 468, 1042
Kzo9I GATC 5 cut(s) 315, 468, 825, 839, 1042
LmnI GCTCC 4 cut(s) 385, 675, 820, 967
Lsp1109I GCAGC 2 cut(s) 259, 262
LweI GCATC 1 cut(s) 470
MaeIII GTNAC 6 cut(s) 23, 104, 188, 322, 508, 983
MalI GATC 5 cut(s) 317, 470, 827, 841, 1044
MboI GATC 5 cut(s) 315, 468, 825, 839, 1042
MboII GAAGA 4 cut(s) 310, 644, 965, 1019
MfeI CAATTG 1 cut(s) 331
MflI RGATCY 1 cut(s) 839
MhlI GDGCHC 2 cut(s) 180, 382
MluCI AATT 5 cut(s) 46, 331, 373, 590, 710
MlyI GAGTC 4 cut(s) 305, 516, 878, 1008
MseI TTAA 7 cut(s) 51, 216, 264, 455, 573, 594, 870
MslI CAYNNNNRTG 2 cut(s) 375, 476
MspI CCGG 1 cut(s) 349
MspR9I CCNGG 1 cut(s) 349
MunI CAATTG 1 cut(s) 331
Mva1269I GAATGC 1 cut(s) 488
NciI CCSGG 1 cut(s) 349
NdeII GATC 5 cut(s) 315, 468, 825, 839, 1042
NlaIII CATG 5 cut(s) 692, 857, 878, 1006, 1051
NlaIV GGNNCC 5 cut(s) 57, 495, 642, 841, 969
NmeAIII GCCGAG 1 cut(s) 334
NmuCI GTSAC 3 cut(s) 104, 322, 983
PagI TCATGA 1 cut(s) 688
PctI GAATGC 1 cut(s) 488
PfeI GAWTC 1 cut(s) 301
PkrI GCNGC 2 cut(s) 249, 252
PleI GAGTC 4 cut(s) 305, 516, 878, 1007
PpsI GAGTC 4 cut(s) 305, 516, 878, 1007
PsiI TTATAA 1 cut(s) 893
PspN4I GGNNCC 5 cut(s) 57, 495, 642, 841, 969
PspPI GGNCC 4 cut(s) 56, 346, 640, 658
PstI CTGCAG 1 cut(s) 492
PsuI RGATCY 1 cut(s) 839
RseI CAYNNNNRTG 2 cut(s) 375, 476
SaqAI TTAA 7 cut(s) 51, 216, 264, 455, 573, 594, 870
SatI GCNGC 2 cut(s) 248, 251
Sau3AI GATC 5 cut(s) 315, 468, 825, 839, 1042
Sau96I GGNCC 4 cut(s) 56, 346, 640, 658
SbfI CCTGCAGG 1 cut(s) 492
SchI GAGTC 4 cut(s) 305, 516, 878, 1008
ScrFI CCNGG 1 cut(s) 349
SdaI CCTGCAGG 1 cut(s) 492
SduI GDGCHC 2 cut(s) 180, 382
SfaNI GCATC 1 cut(s) 470
SfcI CTRYAG 2 cut(s) 488, 1071
SinI GGWCC 2 cut(s) 640, 658
SmiMI CAYNNNNRTG 2 cut(s) 375, 476
Sse8387I CCTGCAGG 1 cut(s) 492
Sse9I AATT 5 cut(s) 46, 331, 373, 590, 710
SsiI CCGC 1 cut(s) 932
SspI AATATT 1 cut(s) 784
StyD4I CCNGG 1 cut(s) 347
TaaI ACNGT 4 cut(s) 194, 328, 610, 686
TaqI TCGA 3 cut(s) 314, 828, 915
TaqII GACCGA 1 cut(s) 848
TasI AATT 5 cut(s) 46, 331, 373, 590, 710
TfiI GAWTC 1 cut(s) 301
Tru1I TTAA 7 cut(s) 51, 216, 264, 455, 573, 594, 870
Tru9I TTAA 7 cut(s) 51, 216, 264, 455, 573, 594, 870
TscAI CASTG 1 cut(s) 615
TseFI GTSAC 3 cut(s) 104, 322, 983
TseI GCWGC 2 cut(s) 247, 250
Tsp45I GTSAC 3 cut(s) 104, 322, 983
TspDTI ATGAA 4 cut(s) 591, 705, 810, 1041
TspGWI ACGGA 1 cut(s) 296
TspRI CASTG 1 cut(s) 615
VpaK11BI GGWCC 2 cut(s) 640, 658
XapI RAATTY 2 cut(s) 46, 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.