RLG00000014191

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000342
Physical Location & Seq
Reverse (-)
49022992 .. 49024339
1348 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014191

Sequence Viewer

Length: 945 bp
ATGCAGGTAGAGCAAGTTCTTCACATGAATGGCGGAGATGGCAAAACAAGCTACGCAAACCACTCACTTCTTCAAAGAGCTGTGATTTCGACGGTGAAGCCTATTGTGGATGCAACCATAGAGGAGCTCTGCAGCACTCTCTTCCCGGAGTGTCTGAAAATAGCGGACTTGGGATGCTCTTCGGGGCCCAATACCCTACTGGTAGTATCAGACATCATAGCCAACATCCAGAACACGTTTCGAAAGCTCAACCTTCCCCCGCCATCGCTCCAAGCATTCTTGAATGACCTTCCCCGGAACGATTTCAACACGGTGTTCAGGTCACTGCCTGGCTTCTATAACAAGCTCGAAGAAGAACATGAGAACAAGTCGGGTCCTTGTTTCATTGCAGCAATGCCCGGTTCCTTTTATGGGAGGCTCTTTCCTGACAACTCTCTCCACTTTGTTCATTCTTCTTATGCTCTCATGTGGATCTCTGAGGTCCCAAAAGGTTTGGTAACGAAAGGAGGAGAGGGACTGAACAAGGGGAACATATATATAGCCAAGACAAGCTCACCCGCTGTGTTTAATGAATACTTTGAGCAATTCAAAAGTGACTTCACAGTCTTTCTGAGGTCTCGGGCACAAGAGCTAGTCCCGGGAGGTAGTATGGTCCTCACAACAATGGGCAGCATAAATAGCAAAGATCCCCTCTGTATTTGGGAATTTGTTGGATTAAAACTCCATGACACGGTTTTAGATGGTGGTTTGATTGAAGAGGAAAAATTGGACACATTCAATTTGCCATACTACGCACCAACAACGGATGAGGTGAAAGAGGTAATCGAGCTGAAGAATGCGAGGGCAGCAGTACTGTCCACTGACATAAGAGCTGTGGGAGAGCTATTCTGGCCAGCCAATTCGGAGAGGAAGCCATGGACGATTTGTTTCGCAGGTTTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

315

Amino Acids

34.81

Weight (kDa)

5.35

Isoelectric Point (pI)

43.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 39 - 278 5.8e-97 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 602
Acc36I ACCTGC 1 cut(s) 923
AciI CCGC 4 cut(s) 33, 164, 260, 558
AclWI GGATC 2 cut(s) 479, 680
AcoI YGGCCR 1 cut(s) 890
AcsI RAATTY 1 cut(s) 704
AcuI CTGAAG 1 cut(s) 851
AfaI GTAC 1 cut(s) 852
AfiI CCNNNNNNNGG 2 cut(s) 411, 730
AflIII ACRYGT 1 cut(s) 234
AgsI TTSAA 7 cut(s) 74, 283, 307, 589, 755, 778, 940
AjnI CCWGG 1 cut(s) 328
Alw21I GWGCWC 1 cut(s) 129
Alw26I GTCTC 1 cut(s) 621
AlwI GGATC 2 cut(s) 479, 680
Ama87I CYCGRG 2 cut(s) 618, 637
AoxI GGCC 2 cut(s) 185, 890
ApaI GGGCCC 1 cut(s) 189
ApeKI GCWGC 4 cut(s) 132, 389, 669, 845
ApoI RAATTY 1 cut(s) 704
Asp700I GAANNNNTTC 1 cut(s) 302
AspS9I GGNCC 5 cut(s) 185, 186, 374, 481, 652
AsuC2I CCSGG 5 cut(s) 146, 295, 399, 638, 639
AsuHPI GGTGA 3 cut(s) 106, 546, 823
AsuII TTCGAA 1 cut(s) 241
AvaI CYCGRG 2 cut(s) 618, 637
AvaII GGWCC 3 cut(s) 374, 481, 652
BaeGI GKGCMC 2 cut(s) 189, 625
BalI TGGCCA 1 cut(s) 892
BanII GRGCYC 2 cut(s) 129, 189
Bbv12I GWGCWC 1 cut(s) 129
BbvI GCAGC 4 cut(s) 144, 401, 681, 857
BccI CCATC 3 cut(s) 32, 271, 734
BciT130I CCWGG 1 cut(s) 330
BcnI CCSGG 5 cut(s) 146, 295, 399, 638, 639
BcoDI GTCTC 1 cut(s) 621
BfaI CTAG 1 cut(s) 632
BfmI CTRYAG 1 cut(s) 130
BfuAI ACCTGC 1 cut(s) 923
BisI GCNGC 4 cut(s) 133, 390, 670, 846
BlsI GCNGC 4 cut(s) 134, 391, 671, 847
BmcAI AGTACT 1 cut(s) 852
Bme1390I CCNGG 6 cut(s) 146, 295, 330, 399, 638, 639
Bme18I GGWCC 3 cut(s) 374, 481, 652
BmeT110I CYCGRG 2 cut(s) 618, 637
BmgT120I GGNCC 5 cut(s) 185, 186, 374, 481, 652
BmiI GGNNCC 5 cut(s) 186, 187, 375, 403, 483
BmrFI CCNGG 6 cut(s) 146, 295, 330, 399, 638, 639
BmsI GCATC 2 cut(s) 100, 164
Bpu14I TTCGAA 1 cut(s) 241
BpuMI CCSGG 5 cut(s) 146, 295, 399, 638, 639
BsaI GGTCTC 1 cut(s) 621
BsaJI CCNNGG 3 cut(s) 293, 637, 914
Bsc4I CCNNNNNNNGG 2 cut(s) 411, 730
Bse1I ACTGG 1 cut(s) 204
Bse3DI GCAATG 2 cut(s) 384, 399
BseBI CCWGG 1 cut(s) 330
BseDI CCNNGG 3 cut(s) 293, 637, 914
BseGI GGATG 4 cut(s) 115, 179, 225, 811
BseLI CCNNNNNNNGG 2 cut(s) 411, 730
BseMI GCAATG 2 cut(s) 384, 399
BseMII CTCAG 2 cut(s) 468, 602
BseNI ACTGG 1 cut(s) 204
BseRI GAGGAG 2 cut(s) 137, 522
BseSI GKGCMC 2 cut(s) 189, 625
BseXI GCAGC 4 cut(s) 144, 401, 681, 857
BshFI GGCC 2 cut(s) 187, 892
BsiHKAI GWGCWC 1 cut(s) 129
BsiHKCI CYCGRG 2 cut(s) 618, 637
BsiSI CCGG 4 cut(s) 146, 295, 399, 638
BslFI GGGAC 3 cut(s) 467, 528, 620
BslI CCNNNNNNNGG 2 cut(s) 411, 730
BsmAI GTCTC 1 cut(s) 621
BsmFI GGGAC 3 cut(s) 467, 528, 620
BsmI GAATGC 2 cut(s) 275, 841
BsnI GGCC 2 cut(s) 187, 892
Bso31I GGTCTC 1 cut(s) 621
BsoBI CYCGRG 2 cut(s) 618, 637
Bsp119I TTCGAA 1 cut(s) 241
Bsp120I GGGCCC 1 cut(s) 185
Bsp1286I GDGCHC 3 cut(s) 129, 189, 625
Bsp143I GATC 2 cut(s) 471, 685
Bsp19I CCATGG 1 cut(s) 914
BspACI CCGC 4 cut(s) 33, 164, 260, 558
BspANI GGCC 2 cut(s) 187, 892
BspCNI CTCAG 2 cut(s) 469, 603
BspLI GGNNCC 5 cut(s) 186, 187, 375, 403, 483
BspMAI CTGCAG 1 cut(s) 134
BspMI ACCTGC 1 cut(s) 923
BspPI GGATC 2 cut(s) 479, 680
BspQI GCTCTTC 1 cut(s) 184
BspT104I TTCGAA 1 cut(s) 241
BspTNI GGTCTC 1 cut(s) 621
BsrDI GCAATG 2 cut(s) 384, 399
BsrI ACTGG 1 cut(s) 204
BssECI CCNNGG 3 cut(s) 293, 637, 914
BssMI GATC 2 cut(s) 471, 685
BssT1I CCWWGG 1 cut(s) 914
Bst2UI CCWGG 1 cut(s) 330
Bst4CI ACNGT 5 cut(s) 94, 313, 604, 733, 855
Bst6I CTCTTC 3 cut(s) 146, 184, 750
BstBI TTCGAA 1 cut(s) 241
BstC8I GCNNGC 1 cut(s) 894
BstDEI CTNAG 2 cut(s) 477, 611
BstDSI CCRYGG 1 cut(s) 914
BstF5I GGATG 4 cut(s) 115, 179, 225, 811
BstKTI GATC 2 cut(s) 474, 688
BstMAI GTCTC 1 cut(s) 621
BstMBI GATC 2 cut(s) 471, 685
BstMWI GCNNNNNNNGC 6 cut(s) 10, 39, 48, 678, 845, 889
BstNI CCWGG 1 cut(s) 330
BstSCI CCNGG 6 cut(s) 144, 293, 328, 397, 636, 637
BstSFI CTRYAG 1 cut(s) 130
BstSLI GKGCMC 2 cut(s) 189, 625
BstV1I GCAGC 4 cut(s) 144, 401, 681, 857
BstX2I RGATCY 2 cut(s) 471, 685
BstYI RGATCY 2 cut(s) 471, 685
BsuRI GGCC 2 cut(s) 187, 892
BtgI CCRYGG 1 cut(s) 914
BtgZI GCGATG 1 cut(s) 249
BtsCI GGATG 4 cut(s) 115, 179, 225, 811
BtsI GCAGTG 1 cut(s) 323
BtsIMutI CAGTG 2 cut(s) 323, 858
BveI ACCTGC 1 cut(s) 923
Cac8I GCNNGC 1 cut(s) 894
Cfr13I GGNCC 5 cut(s) 185, 186, 374, 481, 652
Cfr9I CCCGGG 1 cut(s) 637
Csp6I GTAC 1 cut(s) 851
CviAII CATG 5 cut(s) 25, 359, 466, 725, 915
CviQI GTAC 1 cut(s) 851
DdeI CTNAG 2 cut(s) 477, 611
DpnI GATC 2 cut(s) 473, 687
DpnII GATC 2 cut(s) 471, 685
DrdI GACNNNNNNGTC 1 cut(s) 602
DseDI GACNNNNNNGTC 1 cut(s) 602
EaeI YGGCCR 1 cut(s) 890
Eam1104I CTCTTC 3 cut(s) 146, 184, 750
EarI CTCTTC 3 cut(s) 146, 184, 750
EciI GGCGGA 1 cut(s) 48
Ecl136II GAGCTC 1 cut(s) 127
Eco130I CCWWGG 1 cut(s) 914
Eco24I GRGCYC 2 cut(s) 129, 189
Eco31I GGTCTC 1 cut(s) 621
Eco47I GGWCC 3 cut(s) 374, 481, 652
Eco53kI GAGCTC 1 cut(s) 127
Eco57I CTGAAG 1 cut(s) 851
Eco88I CYCGRG 2 cut(s) 618, 637
EcoICRI GAGCTC 1 cut(s) 127
EcoO109I RGGNCCY 3 cut(s) 185, 374, 481
EcoRII CCWGG 1 cut(s) 328
EcoT14I CCWWGG 1 cut(s) 914
EcoT38I GRGCYC 2 cut(s) 129, 189
ErhI CCWWGG 1 cut(s) 914
FaeI CATG 5 cut(s) 28, 362, 469, 728, 918
FaqI GGGAC 3 cut(s) 467, 528, 620
FatI CATG 5 cut(s) 24, 358, 465, 724, 914
FauI CCCGC 2 cut(s) 267, 565
Fnu4HI GCNGC 4 cut(s) 133, 390, 670, 846
FokI GGATG 4 cut(s) 122, 186, 212, 818
FriOI GRGCYC 2 cut(s) 129, 189
Fsp4HI GCNGC 4 cut(s) 133, 390, 670, 846
FspBI CTAG 1 cut(s) 632
GluI GCNGC 4 cut(s) 133, 390, 670, 846
HaeIII GGCC 2 cut(s) 187, 892
HapII CCGG 4 cut(s) 146, 295, 399, 638
Hin1II CATG 5 cut(s) 28, 362, 469, 728, 918
HpaII CCGG 4 cut(s) 146, 295, 399, 638
HphI GGTGA 3 cut(s) 106, 546, 823
Hpy166II GTNNAC 1 cut(s) 858
Hpy188I TCNGA 5 cut(s) 156, 211, 478, 612, 904
Hpy188III TCNNGA 3 cut(s) 229, 280, 425
Hpy8I GTNNAC 1 cut(s) 858
Hpy99I CGWCG 1 cut(s) 94
HpyAV CCTTC 2 cut(s) 263, 299
HpyCH4III ACNGT 5 cut(s) 94, 313, 604, 733, 855
HpyCH4IV ACGT 1 cut(s) 236
HpyCH4V TGCA 4 cut(s) 4, 113, 132, 389
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 39, 48, 678, 845, 889
HpyF3I CTNAG 2 cut(s) 477, 611
HpySE526I ACGT 1 cut(s) 236
Hsp92II CATG 5 cut(s) 28, 362, 469, 728, 918
Kzo9I GATC 2 cut(s) 471, 685
LguI GCTCTTC 1 cut(s) 184
LmnI GCTCC 2 cut(s) 124, 273
Lsp1109I GCAGC 4 cut(s) 144, 401, 681, 857
LweI GCATC 2 cut(s) 100, 164
MaeI CTAG 1 cut(s) 632
MaeII ACGT 1 cut(s) 236
MaeIII GTNAC 3 cut(s) 321, 496, 593
MalI GATC 2 cut(s) 473, 687
MboI GATC 2 cut(s) 471, 685
MboII GAAGA 9 cut(s) 11, 62, 133, 171, 362, 365, 444, 767, 844
MflI RGATCY 2 cut(s) 471, 685
MhlI GDGCHC 3 cut(s) 129, 189, 625
MlsI TGGCCA 1 cut(s) 892
MluCI AATT 5 cut(s) 584, 704, 764, 778, 898
MluNI TGGCCA 1 cut(s) 892
MmeI TCCRAC 1 cut(s) 691
Mox20I TGGCCA 1 cut(s) 892
MroXI GAANNNNTTC 1 cut(s) 302
MscI TGGCCA 1 cut(s) 892
MseI TTAA 2 cut(s) 567, 716
MslI CAYNNNNRTG 2 cut(s) 27, 662
Msp20I TGGCCA 1 cut(s) 892
MspA1I CMGCKG 1 cut(s) 560
MspI CCGG 4 cut(s) 146, 295, 399, 638
MspR9I CCNGG 6 cut(s) 146, 295, 330, 399, 638, 639
Mva1269I GAATGC 2 cut(s) 275, 841
MvaI CCWGG 1 cut(s) 330
MwoI GCNNNNNNNGC 6 cut(s) 10, 39, 48, 678, 845, 889
NciI CCSGG 5 cut(s) 146, 295, 399, 638, 639
NcoI CCATGG 1 cut(s) 914
NdeII GATC 2 cut(s) 471, 685
NlaIII CATG 5 cut(s) 28, 362, 469, 728, 918
NlaIV GGNNCC 5 cut(s) 186, 187, 375, 403, 483
NmuCI GTSAC 2 cut(s) 321, 593
NspV TTCGAA 1 cut(s) 241
PciSI GCTCTTC 1 cut(s) 184
PctI GAATGC 2 cut(s) 275, 841
PdmI GAANNNNTTC 1 cut(s) 302
PfoI TCCNGGA 1 cut(s) 144
PkrI GCNGC 4 cut(s) 134, 391, 671, 847
PpuMI RGGWCCY 2 cut(s) 374, 481
Psp124BI GAGCTC 1 cut(s) 129
Psp5II RGGWCCY 2 cut(s) 374, 481
Psp6I CCWGG 1 cut(s) 328
PspGI CCWGG 1 cut(s) 328
PspN4I GGNNCC 5 cut(s) 186, 187, 375, 403, 483
PspOMI GGGCCC 1 cut(s) 185
PspPI GGNCC 5 cut(s) 185, 186, 374, 481, 652
PspPPI RGGWCCY 2 cut(s) 374, 481
PsrI GAACNNNNNNTAC 1 cut(s) 32
PstI CTGCAG 1 cut(s) 134
PsuI RGATCY 2 cut(s) 471, 685
RsaI GTAC 1 cut(s) 852
RsaNI GTAC 1 cut(s) 851
RseI CAYNNNNRTG 2 cut(s) 27, 662
SacI GAGCTC 1 cut(s) 129
SapI GCTCTTC 1 cut(s) 184
SaqAI TTAA 2 cut(s) 567, 716
SatI GCNGC 4 cut(s) 133, 390, 670, 846
Sau3AI GATC 2 cut(s) 471, 685
Sau96I GGNCC 5 cut(s) 185, 186, 374, 481, 652
ScaI AGTACT 1 cut(s) 852
ScrFI CCNGG 6 cut(s) 146, 295, 330, 399, 638, 639
SduI GDGCHC 3 cut(s) 129, 189, 625
SfaNI GCATC 2 cut(s) 100, 164
SfcI CTRYAG 1 cut(s) 130
SfuI TTCGAA 1 cut(s) 241
SinI GGWCC 3 cut(s) 374, 481, 652
SmaI CCCGGG 1 cut(s) 639
SmiMI CAYNNNNRTG 2 cut(s) 27, 662
Sse9I AATT 5 cut(s) 584, 704, 764, 778, 898
SsiI CCGC 4 cut(s) 33, 164, 260, 558
SspMI CTAG 1 cut(s) 632
SstI GAGCTC 1 cut(s) 129
StyD4I CCNGG 6 cut(s) 144, 293, 328, 397, 636, 637
StyI CCWWGG 1 cut(s) 914
TaaI ACNGT 5 cut(s) 94, 313, 604, 733, 855
TaiI ACGT 1 cut(s) 239
TaqI TCGA 4 cut(s) 89, 241, 348, 825
TasI AATT 5 cut(s) 584, 704, 764, 778, 898
TatI WGTACW 1 cut(s) 850
Tru1I TTAA 2 cut(s) 567, 716
Tru9I TTAA 2 cut(s) 567, 716
TscAI CASTG 2 cut(s) 330, 865
TseFI GTSAC 2 cut(s) 321, 593
TseI GCWGC 4 cut(s) 132, 389, 669, 845
Tsp45I GTSAC 2 cut(s) 321, 593
TspDTI ATGAA 4 cut(s) 41, 373, 437, 585
TspGWI ACGGA 1 cut(s) 818
TspMI CCCGGG 1 cut(s) 637
TspRI CASTG 2 cut(s) 330, 865
VpaK11BI GGWCC 3 cut(s) 374, 481, 652
XapI RAATTY 1 cut(s) 704
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
XmaI CCCGGG 1 cut(s) 637
XmnI GAANNNNTTC 1 cut(s) 302
XspI CTAG 1 cut(s) 632
ZrmI AGTACT 1 cut(s) 852
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.