Rorug01G0045900

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000342
Physical Location & Seq
Forward (+)
7754629 .. 7755929
1301 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0045900.1

Sequence Viewer

Length: 951 bp
ATGAATTTCTGCTTGCCTATATCTGGTCTGTGTAATTTAACATATCTGAACCTGAGTAATTGCAATCTTGGTGAAGGAGCATTTGGCAACGAATTTGGTTACTTTCCCTCTTTGGTGACCTTGAATCTAAGTGGAAACAATTTTGTTCGTCTTCCTTCTGGCATTAGATTGCTTTCTAAGCTTGAGAACTTCAACTTGGAGAATTGCAAGAGACTTCAAGAGTTGTCAGACCTTCCATCAAATAGTAGACTAGATTTAAGGGCAGATGGTTGTACTTCACTGAAATACCTGTTTGATGCATCAAATTTGAACGGATTAAACAAATCATATTTCAATTTCATCAATTGCTTCAATCTAAATGGCAATCGAGGATGCAATAACATAGCATTTGAAATGCTGAAGACATTCATGTATCAGGGAATCTCTAATAAGAGGGAAACTTTTCATATGGTAATTCCAGGAAGTAATATTCCTGAGTGGTTCAGCCATCGGAGTGTTGGGTGTTCATTCAGTATGGGACCTGCATGCTTAGATGAAGTTTTGGGATTTGCTTTGTGTGCTGTTTTTGTACTCCATGAGCACCATCGAGTGGATAAGCTTTATATGGATGAATTCAAGACTTTTAATGCAACACATCATCTTGTATGTTGCCTGAAGTTCAATGGAATAGAATTGGAAGTATATGGCACACAGCCTGCATTTCGCTTTAGTGAAGAATTTTGCCAGGTTGAATCAGATCACCTGTGGCTATTCTATGTATCTAGTGATAAGTACTTTGGTACAGAGAGGCGGCGTAACTGTTACGATCAGTTTGAGTTCTTATTTGAAACCAGAGGGCCGGGTCTGAAGGTGAGGGAGTGTGGAGTCCGTCTGATATATGAGGAAGATGTGCAAGCGTTGAACCAAACAACCACTCAATCAAGCAGCAGGGGAAACCAGTGCCACTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

316

Amino Acids

36.22

Weight (kDa)

6.0

Isoelectric Point (pI)

38.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C-JID PF20160 152 - 298 5.1e-14 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 529
AccB7I CCANNNNNTGG 1 cut(s) 589
AccI GTMKAC 1 cut(s) 247
AciI CCGC 1 cut(s) 790
AcsI RAATTY 5 cut(s) 4, 92, 304, 611, 716
AcuI CTGAAG 3 cut(s) 419, 674, 866
AfaI GTAC 4 cut(s) 274, 570, 773, 781
AfiI CCNNNNNNNGG 2 cut(s) 23, 589
AjnI CCWGG 2 cut(s) 457, 723
AjuI GAANNNNNNNTTGG 4 cut(s) 66, 98, 179, 211
AluBI AGCT 2 cut(s) 181, 598
AluI AGCT 2 cut(s) 181, 598
Alw21I GWGCWC 1 cut(s) 582
Alw26I GTCTC 1 cut(s) 205
AoxI GGCC 1 cut(s) 836
ApeKI GCWGC 1 cut(s) 924
ApoI RAATTY 5 cut(s) 4, 92, 304, 611, 716
Asp700I GAANNNNTTC 2 cut(s) 404, 441
AspS9I GGNCC 2 cut(s) 518, 836
AsuC2I CCSGG 1 cut(s) 840
AsuHPI GGTGA 4 cut(s) 83, 127, 731, 862
AvaII GGWCC 1 cut(s) 518
BbsI GAAGAC 2 cut(s) 143, 407
Bbv12I GWGCWC 1 cut(s) 582
BbvI GCAGC 1 cut(s) 936
BccI CCATC 4 cut(s) 244, 260, 495, 591
BciT130I CCWGG 2 cut(s) 459, 725
BcnI CCSGG 1 cut(s) 840
BcoDI GTCTC 1 cut(s) 205
BfaI CTAG 2 cut(s) 251, 762
BfuAI ACCTGC 1 cut(s) 529
BisI GCNGC 2 cut(s) 791, 925
BlsI GCNGC 2 cut(s) 792, 926
BmcAI AGTACT 1 cut(s) 773
Bme1390I CCNGG 3 cut(s) 459, 725, 840
Bme18I GGWCC 1 cut(s) 518
BmgT120I GGNCC 2 cut(s) 518, 836
BmiI GGNNCC 1 cut(s) 519
BmrFI CCNGG 3 cut(s) 459, 725, 840
BmsI GCATC 3 cut(s) 286, 308, 362
BpiI GAAGAC 2 cut(s) 143, 407
BpuEI CTTGAG 1 cut(s) 203
BpuMI CCSGG 1 cut(s) 840
Bsc4I CCNNNNNNNGG 2 cut(s) 23, 589
Bse1I ACTGG 2 cut(s) 937, 950
BseBI CCWGG 2 cut(s) 459, 725
BseGI GGATG 2 cut(s) 377, 613
BseLI CCNNNNNNNGG 2 cut(s) 23, 589
BseMII CTCAG 2 cut(s) 44, 465
BseNI ACTGG 2 cut(s) 937, 950
BseXI GCAGC 1 cut(s) 936
BshFI GGCC 1 cut(s) 838
BsiHKAI GWGCWC 1 cut(s) 582
BsiSI CCGG 1 cut(s) 839
BslFI GGGAC 1 cut(s) 531
BslI CCNNNNNNNGG 2 cut(s) 23, 589
BsmAI GTCTC 1 cut(s) 205
BsmFI GGGAC 1 cut(s) 531
BsnI GGCC 1 cut(s) 838
Bsp1286I GDGCHC 1 cut(s) 582
Bsp143I GATC 2 cut(s) 736, 805
BspACI CCGC 1 cut(s) 790
BspANI GGCC 1 cut(s) 838
BspCNI CTCAG 2 cut(s) 45, 466
BspLI GGNNCC 1 cut(s) 519
BspMI ACCTGC 1 cut(s) 529
BsrI ACTGG 2 cut(s) 937, 950
BssMI GATC 2 cut(s) 736, 805
Bst2UI CCWGG 2 cut(s) 459, 725
Bst4CI ACNGT 1 cut(s) 800
BstC8I GCNNGC 4 cut(s) 14, 526, 696, 894
BstDEI CTNAG 5 cut(s) 53, 128, 177, 474, 529
BstEII GGTNACC 1 cut(s) 115
BstF5I GGATG 2 cut(s) 377, 613
BstKTI GATC 2 cut(s) 739, 808
BstMAI GTCTC 1 cut(s) 205
BstMBI GATC 2 cut(s) 736, 805
BstMWI GCNNNNNNNGC 2 cut(s) 178, 557
BstNI CCWGG 2 cut(s) 459, 725
BstNSI RCATGY 1 cut(s) 528
BstPI GGTNACC 1 cut(s) 115
BstSCI CCNGG 3 cut(s) 457, 723, 838
BstV1I GCAGC 1 cut(s) 936
BstV2I GAAGAC 2 cut(s) 143, 407
BsuRI GGCC 1 cut(s) 838
BtsCI GGATG 2 cut(s) 377, 613
BtsIMutI CAGTG 3 cut(s) 278, 943, 944
BveI ACCTGC 1 cut(s) 529
Cac8I GCNNGC 4 cut(s) 14, 526, 696, 894
Cfr13I GGNCC 2 cut(s) 518, 836
Csp6I GTAC 4 cut(s) 273, 569, 772, 780
CviAII CATG 3 cut(s) 409, 525, 575
CviJI RGCY 6 cut(s) 181, 486, 598, 694, 748, 838
CviKI_1 RGCY 6 cut(s) 181, 486, 598, 694, 748, 838
CviQI GTAC 4 cut(s) 273, 569, 772, 780
DdeI CTNAG 5 cut(s) 53, 128, 177, 474, 529
DpnI GATC 2 cut(s) 738, 807
DpnII GATC 2 cut(s) 736, 805
Eco47I GGWCC 1 cut(s) 518
Eco57I CTGAAG 3 cut(s) 419, 674, 866
Eco91I GGTNACC 1 cut(s) 115
EcoO109I RGGNCCY 1 cut(s) 518
EcoO65I GGTNACC 1 cut(s) 115
EcoRI GAATTC 1 cut(s) 611
EcoRII CCWGG 2 cut(s) 457, 723
EcoT22I ATGCAT 1 cut(s) 301
FaeI CATG 3 cut(s) 412, 528, 578
FaqI GGGAC 1 cut(s) 531
FatI CATG 3 cut(s) 408, 524, 574
FauNDI CATATG 1 cut(s) 447
FblI GTMKAC 1 cut(s) 247
Fnu4HI GCNGC 2 cut(s) 791, 925
FokI GGATG 2 cut(s) 384, 620
Fsp4HI GCNGC 2 cut(s) 791, 925
FspBI CTAG 2 cut(s) 251, 762
GluI GCNGC 2 cut(s) 791, 925
HaeIII GGCC 1 cut(s) 838
HapII CCGG 1 cut(s) 839
Hin1II CATG 3 cut(s) 412, 528, 578
HindIII AAGCTT 2 cut(s) 179, 596
HinfI GANTC 4 cut(s) 124, 420, 731, 864
HpaII CCGG 1 cut(s) 839
HphI GGTGA 4 cut(s) 83, 127, 731, 862
Hpy166II GTNNAC 1 cut(s) 248
Hpy188I TCNGA 6 cut(s) 48, 229, 492, 736, 846, 873
Hpy188III TCNNGA 3 cut(s) 218, 473, 616
Hpy8I GTNNAC 1 cut(s) 248
HpyAV CCTTC 4 cut(s) 68, 165, 242, 841
HpyCH4III ACNGT 1 cut(s) 800
HpyCH4V TGCA 8 cut(s) 63, 207, 299, 375, 524, 629, 698, 892
HpyF10VI GCNNNNNNNGC 2 cut(s) 178, 557
HpyF3I CTNAG 5 cut(s) 53, 128, 177, 474, 529
Hsp92II CATG 3 cut(s) 412, 528, 578
Kzo9I GATC 2 cut(s) 736, 805
LmnI GCTCC 1 cut(s) 77
Lsp1109I GCAGC 1 cut(s) 936
LweI GCATC 3 cut(s) 286, 308, 362
MaeI CTAG 2 cut(s) 251, 762
MaeIII GTNAC 4 cut(s) 98, 115, 794, 800
MalI GATC 2 cut(s) 738, 807
MboI GATC 2 cut(s) 736, 805
MboII GAAGA 4 cut(s) 143, 412, 725, 896
MfeI CAATTG 1 cut(s) 343
MhlI GDGCHC 1 cut(s) 582
MlyI GAGTC 1 cut(s) 873
MnlI CCTC 7 cut(s) 118, 362, 426, 780, 827, 846, 874
Mph1103I ATGCAT 1 cut(s) 301
MroXI GAANNNNTTC 2 cut(s) 404, 441
MseI TTAA 4 cut(s) 38, 257, 317, 624
MslI CAYNNNNRTG 1 cut(s) 492
MspI CCGG 1 cut(s) 839
MspR9I CCNGG 3 cut(s) 459, 725, 840
MunI CAATTG 1 cut(s) 343
MvaI CCWGG 2 cut(s) 459, 725
MwoI GCNNNNNNNGC 2 cut(s) 178, 557
NciI CCSGG 1 cut(s) 840
NdeI CATATG 1 cut(s) 447
NdeII GATC 2 cut(s) 736, 805
NlaIII CATG 3 cut(s) 412, 528, 578
NlaIV GGNNCC 1 cut(s) 519
NmuCI GTSAC 1 cut(s) 115
NsiI ATGCAT 1 cut(s) 301
NspI RCATGY 1 cut(s) 528
PaeI GCATGC 1 cut(s) 528
PdmI GAANNNNTTC 2 cut(s) 404, 441
PfeI GAWTC 3 cut(s) 124, 420, 731
PflMI CCANNNNNTGG 1 cut(s) 589
PfoI TCCNGGA 1 cut(s) 457
PkrI GCNGC 2 cut(s) 792, 926
PleI GAGTC 1 cut(s) 872
PpsI GAGTC 1 cut(s) 872
PpuMI RGGWCCY 1 cut(s) 518
Psp5II RGGWCCY 1 cut(s) 518
Psp6I CCWGG 2 cut(s) 457, 723
PspEI GGTNACC 1 cut(s) 115
PspGI CCWGG 2 cut(s) 457, 723
PspN4I GGNNCC 1 cut(s) 519
PspPI GGNCC 2 cut(s) 518, 836
PspPPI RGGWCCY 1 cut(s) 518
RsaI GTAC 4 cut(s) 274, 570, 773, 781
RsaNI GTAC 4 cut(s) 273, 569, 772, 780
RseI CAYNNNNRTG 1 cut(s) 492
SaqAI TTAA 4 cut(s) 38, 257, 317, 624
SatI GCNGC 2 cut(s) 791, 925
Sau3AI GATC 2 cut(s) 736, 805
Sau96I GGNCC 2 cut(s) 518, 836
ScaI AGTACT 1 cut(s) 773
SchI GAGTC 1 cut(s) 873
ScrFI CCNGG 3 cut(s) 459, 725, 840
SduI GDGCHC 1 cut(s) 582
SfaNI GCATC 3 cut(s) 286, 308, 362
SinI GGWCC 1 cut(s) 518
SmiMI CAYNNNNRTG 1 cut(s) 492
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
SphI GCATGC 1 cut(s) 528
SsiI CCGC 1 cut(s) 790
SspI AATATT 1 cut(s) 469
SspMI CTAG 2 cut(s) 251, 762
StyD4I CCNGG 3 cut(s) 457, 723, 838
TaaI ACNGT 1 cut(s) 800
TaqI TCGA 2 cut(s) 367, 586
TatI WGTACW 3 cut(s) 272, 568, 771
TauI GCSGC 1 cut(s) 793
TfiI GAWTC 3 cut(s) 124, 420, 731
Tru1I TTAA 4 cut(s) 38, 257, 317, 624
Tru9I TTAA 4 cut(s) 38, 257, 317, 624
TscAI CASTG 3 cut(s) 285, 944, 950
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 1 cut(s) 924
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 7 cut(s) 17, 328, 397, 434, 495, 549, 624
TspGWI ACGGA 2 cut(s) 327, 857
TspRI CASTG 3 cut(s) 285, 944, 950
Van91I CCANNNNNTGG 1 cut(s) 589
VpaK11BI GGWCC 1 cut(s) 518
XapI RAATTY 5 cut(s) 4, 92, 304, 611, 716
XceI RCATGY 1 cut(s) 528
XcmI CCANNNNNNNNNTGG 1 cut(s) 494
XmiI GTMKAC 1 cut(s) 247
XmnI GAANNNNTTC 2 cut(s) 404, 441
XspI CTAG 2 cut(s) 251, 762
ZrmI AGTACT 1 cut(s) 773
Zsp2I ATGCAT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.