Rh1BG052400

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000342
Physical Location & Seq
Reverse (-)
7315633 .. 7319768
4136 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG052400.1

Sequence Viewer

Length: 435 bp
ATGGAGGTGGAGCAAGTCCTTCACATGAATGGCGGATGTGGGAGAACAAGCTATTCAAACAACTCGCTTCTTCAAGGTTTGATTGAAAAGAAAAACTTAGACTACTTCAATATTCCGTTCTATGAACCTACAATGGAGGAACTGATGGAGCTGTTCGAGATCGAAGGATCCTTTAGGTTGCAGGACCATCAAGTTTTTAAACATGATTGGGACTCTTTTATAAAGGAAGCTGATAGTGGTCTCGATAAGAAAGCAAGGGCAGGTATACTCTCCACTCACATTAGGTCTGTGTTGGAGCCTCTTCTGATCAGTCACTTTGGAGATGGAGTCATGGAAGATTTGTTTCGCAGGTTTGAAAAAGATGTTCTTGATCACATGGAAAAGGAAAAGTACCAGTCTATAGATATAGTTCTATCGCTGACAAAGGAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

144

Amino Acids

16.84

Weight (kDa)

4.91

Isoelectric Point (pI)

47.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 24 - 142 2.2e-27 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 221
Acc36I ACCTGC 2 cut(s) 251, 339
AccI GTMKAC 1 cut(s) 265
AciI CCGC 1 cut(s) 33
AclWI GGATC 2 cut(s) 162, 175
AfaI GTAC 1 cut(s) 392
AgsI TTSAA 5 cut(s) 57, 74, 86, 109, 356
AluBI AGCT 3 cut(s) 51, 151, 230
AluI AGCT 3 cut(s) 51, 151, 230
Alw26I GTCTC 1 cut(s) 245
AlwI GGATC 2 cut(s) 162, 175
AspS9I GGNCC 1 cut(s) 184
AvaII GGWCC 1 cut(s) 184
BamHI GGATCC 1 cut(s) 167
BccI CCATC 3 cut(s) 139, 195, 317
BclI TGATCA 2 cut(s) 306, 370
BcoDI GTCTC 1 cut(s) 245
BfmI CTRYAG 1 cut(s) 399
BfuAI ACCTGC 2 cut(s) 251, 339
Bme18I GGWCC 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 184
BmiI GGNNCC 2 cut(s) 169, 297
BsaI GGTCTC 1 cut(s) 245
BsaXI ACNNNNNCTCC 2 cut(s) 312, 342
Bse1I ACTGG 1 cut(s) 394
BseGI GGATG 1 cut(s) 41
BseNI ACTGG 1 cut(s) 394
BslFI GGGAC 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 245
BsmFI GGGAC 1 cut(s) 224
Bso31I GGTCTC 1 cut(s) 245
Bsp143I GATC 4 cut(s) 159, 167, 306, 370
BspACI CCGC 1 cut(s) 33
BspLI GGNNCC 2 cut(s) 169, 297
BspMI ACCTGC 2 cut(s) 251, 339
BspPI GGATC 2 cut(s) 162, 175
BspTNI GGTCTC 1 cut(s) 245
BsrI ACTGG 1 cut(s) 394
BssMI GATC 4 cut(s) 159, 167, 306, 370
BssNAI GTATAC 1 cut(s) 266
Bst1107I GTATAC 1 cut(s) 266
Bst6I CTCTTC 1 cut(s) 306
BstDEI CTNAG 1 cut(s) 97
BstF5I GGATG 1 cut(s) 41
BstKTI GATC 4 cut(s) 162, 170, 309, 373
BstMAI GTCTC 1 cut(s) 245
BstMBI GATC 4 cut(s) 159, 167, 306, 370
BstSFI CTRYAG 1 cut(s) 399
BstX2I RGATCY 1 cut(s) 167
BstYI RGATCY 1 cut(s) 167
BstZ17I GTATAC 1 cut(s) 266
BtsCI GGATG 1 cut(s) 41
BveI ACCTGC 2 cut(s) 251, 339
Cfr13I GGNCC 1 cut(s) 184
Csp6I GTAC 1 cut(s) 391
CviAII CATG 4 cut(s) 25, 203, 331, 376
CviJI RGCY 4 cut(s) 51, 151, 230, 298
CviKI_1 RGCY 4 cut(s) 51, 151, 230, 298
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 1 cut(s) 97
DpnI GATC 4 cut(s) 161, 169, 308, 372
DpnII GATC 4 cut(s) 159, 167, 306, 370
DraI TTTAAA 1 cut(s) 199
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
EciI GGCGGA 1 cut(s) 48
Eco31I GGTCTC 1 cut(s) 245
Eco47I GGWCC 1 cut(s) 184
FaeI CATG 4 cut(s) 28, 206, 334, 379
FaiI YATR 9 cut(s) 26, 123, 204, 221, 266, 332, 377, 401, 407
FalI AAGNNNNNCTT 4 cut(s) 80, 112, 351, 383
FaqI GGGAC 1 cut(s) 224
FatI CATG 4 cut(s) 24, 202, 330, 375
FbaI TGATCA 2 cut(s) 306, 370
FblI GTMKAC 1 cut(s) 265
FokI GGATG 1 cut(s) 48
Hin1II CATG 4 cut(s) 28, 206, 334, 379
HinfI GANTC 2 cut(s) 212, 327
Hpy166II GTNNAC 1 cut(s) 266
Hpy188I TCNGA 1 cut(s) 306
Hpy188III TCNNGA 3 cut(s) 157, 242, 368
Hpy8I GTNNAC 1 cut(s) 266
HpyAV CCTTC 2 cut(s) 29, 158
HpyCH4V TGCA 1 cut(s) 181
HpyF3I CTNAG 1 cut(s) 97
Hsp92II CATG 4 cut(s) 28, 206, 334, 379
Ksp22I TGATCA 2 cut(s) 306, 370
Kzo9I GATC 4 cut(s) 159, 167, 306, 370
LmnI GCTCC 3 cut(s) 10, 148, 295
LpnPI CCDG 4 cut(s) 167, 246, 334, 407
MaeIII GTNAC 1 cut(s) 311
MalI GATC 4 cut(s) 161, 169, 308, 372
MboI GATC 4 cut(s) 159, 167, 306, 370
MboII GAAGA 3 cut(s) 62, 293, 347
MflI RGATCY 1 cut(s) 167
MlyI GAGTC 2 cut(s) 206, 336
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 2 cut(s) 130, 309
MseI TTAA 1 cut(s) 198
MslI CAYNNNNRTG 1 cut(s) 27
NdeII GATC 4 cut(s) 159, 167, 306, 370
NlaIII CATG 4 cut(s) 28, 206, 334, 379
NlaIV GGNNCC 2 cut(s) 169, 297
NmuCI GTSAC 1 cut(s) 311
PleI GAGTC 2 cut(s) 206, 335
PpsI GAGTC 2 cut(s) 206, 335
PsiI TTATAA 1 cut(s) 221
PspN4I GGNNCC 2 cut(s) 169, 297
PspPI GGNCC 1 cut(s) 184
PsuI RGATCY 1 cut(s) 167
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
RseI CAYNNNNRTG 1 cut(s) 27
SaqAI TTAA 1 cut(s) 198
Sau3AI GATC 4 cut(s) 159, 167, 306, 370
Sau96I GGNCC 1 cut(s) 184
SchI GAGTC 2 cut(s) 206, 336
SfcI CTRYAG 1 cut(s) 399
SinI GGWCC 1 cut(s) 184
SmiMI CAYNNNNRTG 1 cut(s) 27
SsiI CCGC 1 cut(s) 33
SspI AATATT 1 cut(s) 112
TaqI TCGA 3 cut(s) 156, 162, 243
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TseFI GTSAC 1 cut(s) 311
Tsp45I GTSAC 1 cut(s) 311
TspDTI ATGAA 2 cut(s) 41, 138
TspGWI ACGGA 1 cut(s) 105
VpaK11BI GGWCC 1 cut(s) 184
XmiI GTMKAC 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.