RchiOBHm_Chr6g0265311

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000342
Physical Location & Seq
Forward (+)
20903377 .. 20903756
380 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23795

Sequence Viewer

Length: 339 bp
ATGAAAAAGATTAACATGGTCCTAGCTCCTATAGTGGATGCAAGCATAGAGGAGCTCTGCAGCACTCTCTTCCCGGAGTGCCTGAAAATAGCGGACTTGGGATGCTCTTCGGGACCCAATACCCTACTGGTAGTATCAGACATCATAGCCATCATCCAGAACACGTTTCGGAAGCTCAACCTTCCCCCGCCATCCCTCCAAGCATTCTTGAATGACCTTCCCCGGAACGATTTCAACACGGTGTTTAGGTCACTGCCTGGCTTCTATAACAAGCTCGATGAAGAACATGAGAACAAGTCGGGTCCTTGTTTCATTGCAGCAATGCCTGGTATGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

112

Amino Acids

12.31

Weight (kDa)

4.96

Isoelectric Point (pI)

54.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 16 - 110 2e-35 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 92, 188
AflIII ACRYGT 1 cut(s) 162
AgsI TTSAA 2 cut(s) 211, 235
AjnI CCWGG 2 cut(s) 256, 325
AluBI AGCT 4 cut(s) 26, 55, 175, 274
AluI AGCT 4 cut(s) 26, 55, 175, 274
Alw21I GWGCWC 1 cut(s) 57
ApeKI GCWGC 2 cut(s) 60, 317
Asp700I GAANNNNTTC 1 cut(s) 230
AspS9I GGNCC 3 cut(s) 19, 113, 302
AsuC2I CCSGG 2 cut(s) 74, 223
AvaII GGWCC 3 cut(s) 19, 113, 302
BanII GRGCYC 1 cut(s) 57
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 2 cut(s) 72, 329
BccI CCATC 2 cut(s) 158, 199
BciT130I CCWGG 2 cut(s) 258, 327
BcnI CCSGG 2 cut(s) 74, 223
BfaI CTAG 1 cut(s) 23
BfmI CTRYAG 2 cut(s) 30, 58
BisI GCNGC 2 cut(s) 61, 318
BlsI GCNGC 2 cut(s) 62, 319
Bme1390I CCNGG 4 cut(s) 74, 223, 258, 327
Bme18I GGWCC 3 cut(s) 19, 113, 302
BmgT120I GGNCC 3 cut(s) 19, 113, 302
BmiI GGNNCC 3 cut(s) 114, 115, 303
BmrFI CCNGG 4 cut(s) 74, 223, 258, 327
BmsI GCATC 2 cut(s) 28, 92
BpuMI CCSGG 2 cut(s) 74, 223
BsaJI CCNNGG 1 cut(s) 221
Bse1I ACTGG 1 cut(s) 132
Bse3DI GCAATG 2 cut(s) 312, 327
BseBI CCWGG 2 cut(s) 258, 327
BseDI CCNNGG 1 cut(s) 221
BseGI GGATG 4 cut(s) 43, 107, 153, 191
BseMI GCAATG 2 cut(s) 312, 327
BseNI ACTGG 1 cut(s) 132
BseRI GAGGAG 1 cut(s) 65
BseXI GCAGC 2 cut(s) 72, 329
BsiHKAI GWGCWC 1 cut(s) 57
BsiSI CCGG 2 cut(s) 74, 223
BslFI GGGAC 1 cut(s) 126
BsmFI GGGAC 1 cut(s) 126
BsmI GAATGC 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 57
BspACI CCGC 2 cut(s) 92, 188
BspLI GGNNCC 3 cut(s) 114, 115, 303
BspMAI CTGCAG 1 cut(s) 62
BspQI GCTCTTC 1 cut(s) 112
BsrDI GCAATG 2 cut(s) 312, 327
BsrI ACTGG 1 cut(s) 132
BssECI CCNNGG 1 cut(s) 221
Bst2UI CCWGG 2 cut(s) 258, 327
Bst4CI ACNGT 1 cut(s) 241
Bst6I CTCTTC 2 cut(s) 74, 112
BstC8I GCNNGC 1 cut(s) 43
BstF5I GGATG 4 cut(s) 43, 107, 153, 191
BstNI CCWGG 2 cut(s) 258, 327
BstSCI CCNGG 4 cut(s) 72, 221, 256, 325
BstSFI CTRYAG 2 cut(s) 30, 58
BstV1I GCAGC 2 cut(s) 72, 329
BtsCI GGATG 4 cut(s) 43, 107, 153, 191
BtsI GCAGTG 1 cut(s) 251
BtsIMutI CAGTG 1 cut(s) 251
Cac8I GCNNGC 1 cut(s) 43
Cfr13I GGNCC 3 cut(s) 19, 113, 302
CviAII CATG 2 cut(s) 16, 287
CviJI RGCY 6 cut(s) 26, 55, 149, 175, 261, 274
CviKI_1 RGCY 6 cut(s) 26, 55, 149, 175, 261, 274
Eam1104I CTCTTC 2 cut(s) 74, 112
EarI CTCTTC 2 cut(s) 74, 112
Ecl136II GAGCTC 1 cut(s) 55
Eco24I GRGCYC 1 cut(s) 57
Eco47I GGWCC 3 cut(s) 19, 113, 302
Eco53kI GAGCTC 1 cut(s) 55
EcoICRI GAGCTC 1 cut(s) 55
EcoO109I RGGNCCY 2 cut(s) 113, 302
EcoRII CCWGG 2 cut(s) 256, 325
EcoT38I GRGCYC 1 cut(s) 57
FaeI CATG 2 cut(s) 19, 290
FaiI YATR 8 cut(s) 17, 32, 47, 146, 267, 288, 332, 337
FaqI GGGAC 1 cut(s) 126
FatI CATG 2 cut(s) 15, 286
FauI CCCGC 1 cut(s) 195
Fnu4HI GCNGC 2 cut(s) 61, 318
FokI GGATG 4 cut(s) 50, 114, 140, 178
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 2 cut(s) 61, 318
FspBI CTAG 1 cut(s) 23
GluI GCNGC 2 cut(s) 61, 318
HapII CCGG 2 cut(s) 74, 223
Hin1II CATG 2 cut(s) 19, 290
HpaII CCGG 2 cut(s) 74, 223
Hpy188I TCNGA 2 cut(s) 139, 171
Hpy188III TCNNGA 3 cut(s) 111, 157, 208
HpyAV CCTTC 2 cut(s) 191, 227
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4IV ACGT 1 cut(s) 164
HpyCH4V TGCA 3 cut(s) 41, 60, 317
HpySE526I ACGT 1 cut(s) 164
Hsp92II CATG 2 cut(s) 19, 290
KflI GGGWCCC 1 cut(s) 113
LguI GCTCTTC 1 cut(s) 112
LmnI GCTCC 2 cut(s) 31, 52
LpnPI CCDG 8 cut(s) 87, 95, 113, 170, 236, 243, 270, 312
Lsp1109I GCAGC 2 cut(s) 72, 329
LweI GCATC 2 cut(s) 28, 92
MaeI CTAG 1 cut(s) 23
MaeII ACGT 1 cut(s) 164
MaeIII GTNAC 1 cut(s) 249
MboII GAAGA 3 cut(s) 61, 99, 293
MhlI GDGCHC 1 cut(s) 57
MnlI CCTC 2 cut(s) 43, 206
MroXI GAANNNNTTC 1 cut(s) 230
MseI TTAA 1 cut(s) 12
MspI CCGG 2 cut(s) 74, 223
MspR9I CCNGG 4 cut(s) 74, 223, 258, 327
Mva1269I GAATGC 1 cut(s) 203
MvaI CCWGG 2 cut(s) 258, 327
NciI CCSGG 2 cut(s) 74, 223
NlaIII CATG 2 cut(s) 19, 290
NlaIV GGNNCC 3 cut(s) 114, 115, 303
NmuCI GTSAC 1 cut(s) 249
PciSI GCTCTTC 1 cut(s) 112
PctI GAATGC 1 cut(s) 203
PdmI GAANNNNTTC 1 cut(s) 230
PfoI TCCNGGA 1 cut(s) 72
PkrI GCNGC 2 cut(s) 62, 319
PpuMI RGGWCCY 2 cut(s) 113, 302
Psp124BI GAGCTC 1 cut(s) 57
Psp5II RGGWCCY 2 cut(s) 113, 302
Psp6I CCWGG 2 cut(s) 256, 325
PspGI CCWGG 2 cut(s) 256, 325
PspN4I GGNNCC 3 cut(s) 114, 115, 303
PspPI GGNCC 3 cut(s) 19, 113, 302
PspPPI RGGWCCY 2 cut(s) 113, 302
PstI CTGCAG 1 cut(s) 62
SacI GAGCTC 1 cut(s) 57
SapI GCTCTTC 1 cut(s) 112
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 2 cut(s) 61, 318
Sau96I GGNCC 3 cut(s) 19, 113, 302
ScrFI CCNGG 4 cut(s) 74, 223, 258, 327
SduI GDGCHC 1 cut(s) 57
SetI ASST 8 cut(s) 28, 57, 167, 177, 183, 219, 251, 276
SfaNI GCATC 2 cut(s) 28, 92
SfcI CTRYAG 2 cut(s) 30, 58
SinI GGWCC 3 cut(s) 19, 113, 302
SsiI CCGC 2 cut(s) 92, 188
SspMI CTAG 1 cut(s) 23
SstI GAGCTC 1 cut(s) 57
StyD4I CCNGG 4 cut(s) 72, 221, 256, 325
TaaI ACNGT 1 cut(s) 241
TaiI ACGT 1 cut(s) 167
TaqI TCGA 1 cut(s) 276
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 1 cut(s) 258
TseFI GTSAC 1 cut(s) 249
TseI GCWGC 2 cut(s) 60, 317
Tsp45I GTSAC 1 cut(s) 249
TspDTI ATGAA 3 cut(s) 17, 294, 301
TspRI CASTG 1 cut(s) 258
VpaK11BI GGWCC 3 cut(s) 19, 113, 302
XcmI CCANNNNNNNNNTGG 1 cut(s) 124
XmnI GAANNNNTTC 1 cut(s) 230
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.