RLG00000014186

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000342
Physical Location & Seq
Forward (+)
48907126 .. 48909384
2259 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014186

Sequence Viewer

Length: 1101 bp
ATGGAGGTAGAGCAGGTTCTTCACATGAATGGCGGAGATGGCAAAACAAGCTACGCAAACCACTCACTTCTTCAAAGAGCTGTGATTTCGACGGTGAAGCCCATAGTGGACGCATGCATAGAGGAGCTCTGCAGCACTCTCTTCCCAGAGTGTCTGAAAATAGCAGACTTGGGATGCTCTTCGGGACCCAATACCCTTCTGGTGGTATCAGACATCATGGACAACATCCAGAAAACGTTTCGGAAGCTGAACCTTCCCCCACCATCACTTCAAGCATTCTTGAATGACCTTCCCAGGAACGATTTCAACACGGTGTTCAAGTCACTGCCTGGCTTCTATAAGAAGCTCGATGAAGAACGTGATAAAAAGTCGGGTCCTTGTTTCATTGCAGCTATGCCTGGTTCCTTTTATGGGAGGCTCTTTCCTAACAACTCTCTCCACTTTGTTCATTCTTCTTATGCTCTCATGTGGATCTCTGAGGTTCCAAAAGGTTTGGTAACAAAAGCAGGAGAGGGACTGAACAAGGGGAACATATACATAGCCAAGACGAGCTCACCTGCTGTGTTTAATGAATACTATGAGCAATTCAAAAGGGACTTCACACTCTTTCTGAGATCTCGGGCACAAGAACTAGTCCCAGGAGGTAGTATGGTCCTCACAACCATGGGCAGCATAACGAGCAATGATCCCCTCAGCATTTGGGAATTCGTCGGATTGAAACTCAATGACATGGTTTTAGATGGTTTGATTGAGAAGGAAAAGTTGGACACATTCAATTTGCCATACTATGCACCCACAAGATACGAGGTAAAGGAGATGATCGAGGCTGAAGGGTCTTTCACTTTGCAAAACCTTGAAGCTTTCAGAAATGACTGGGACTCTTACATAAAACAAGCTAAAAGTGACCTTGACAAGAAAGCAAGGGCTACAATACTCTCCACTGACATAAGGGCTGTGGGAGAGCCTATTCTGGCTAGCCATTTCGGAGAGGAAGCAATGGACGAATTGTTCAGTAGGTTCGAAGAAAATGTTCTCGATCACATGGAAAGAGAGAAGTGCCAGTTCATTAACCTGGTTATCTCATTGATTAAGAAGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

367

Amino Acids

41.32

Weight (kDa)

5.45

Isoelectric Point (pI)

41.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 40 - 364 9.4e-124 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 565
Acc36I ACCTGC 2 cut(s) 4, 565
AciI CCGC 1 cut(s) 33
AclI AACGTT 1 cut(s) 236
AclWI GGATC 2 cut(s) 479, 680
AcsI RAATTY 1 cut(s) 704
AcuI CTGAAG 1 cut(s) 849
AfiI CCNNNNNNNGG 2 cut(s) 202, 411
AgsI TTSAA 9 cut(s) 74, 272, 283, 307, 319, 589, 718, 775, 857
AhlI ACTAGT 1 cut(s) 631
AjnI CCWGG 5 cut(s) 293, 328, 397, 637, 1071
AjuI GAANNNNNNNTTGG 2 cut(s) 746, 778
AloI GAACNNNNNNTCC 2 cut(s) 992, 1024
AluBI AGCT 9 cut(s) 51, 80, 127, 247, 346, 392, 552, 860, 896
AluI AGCT 9 cut(s) 51, 80, 127, 247, 346, 392, 552, 860, 896
Alw21I GWGCWC 2 cut(s) 129, 554
AlwI GGATC 2 cut(s) 479, 680
Ama87I CYCGRG 1 cut(s) 618
ApeKI GCWGC 3 cut(s) 132, 389, 669
ApoI RAATTY 1 cut(s) 704
Asp700I GAANNNNTTC 2 cut(s) 302, 1029
AspS9I GGNCC 3 cut(s) 185, 374, 652
AsuHPI GGTGA 2 cut(s) 106, 546
AsuII TTCGAA 1 cut(s) 1020
AsuNHI GCTAGC 1 cut(s) 974
AvaI CYCGRG 1 cut(s) 618
AvaII GGWCC 3 cut(s) 185, 374, 652
BaeGI GKGCMC 1 cut(s) 625
BanII GRGCYC 2 cut(s) 129, 554
Bbv12I GWGCWC 2 cut(s) 129, 554
BbvCI CCTCAGC 1 cut(s) 692
BbvI GCAGC 3 cut(s) 144, 401, 681
BccI CCATC 3 cut(s) 32, 271, 734
BciT130I CCWGG 5 cut(s) 295, 330, 399, 639, 1073
BcuI ACTAGT 1 cut(s) 631
BfaI CTAG 2 cut(s) 632, 975
BfmI CTRYAG 1 cut(s) 130
BfuAI ACCTGC 2 cut(s) 4, 565
BglII AGATCT 1 cut(s) 614
BisI GCNGC 3 cut(s) 133, 390, 670
BlsI GCNGC 3 cut(s) 134, 391, 671
Bme1390I CCNGG 5 cut(s) 295, 330, 399, 639, 1073
Bme18I GGWCC 3 cut(s) 185, 374, 652
BmeT110I CYCGRG 1 cut(s) 618
BmgT120I GGNCC 3 cut(s) 185, 374, 652
BmiI GGNNCC 5 cut(s) 186, 187, 375, 403, 483
BmrFI CCNGG 5 cut(s) 295, 330, 399, 639, 1073
BmrI ACTGGG 1 cut(s) 883
BmsI GCATC 1 cut(s) 164
BmtI GCTAGC 1 cut(s) 978
BmuI ACTGGG 1 cut(s) 883
Bpu10I CCTNAGC 1 cut(s) 692
Bpu14I TTCGAA 1 cut(s) 1020
BsaJI CCNNGG 3 cut(s) 293, 637, 663
Bsc4I CCNNNNNNNGG 2 cut(s) 202, 411
Bse1I ACTGG 2 cut(s) 878, 1060
Bse3DI GCAATG 3 cut(s) 384, 688, 1002
BseBI CCWGG 5 cut(s) 295, 330, 399, 639, 1073
BseDI CCNNGG 3 cut(s) 293, 637, 663
BseGI GGATG 2 cut(s) 179, 225
BseLI CCNNNNNNNGG 2 cut(s) 202, 411
BseMI GCAATG 3 cut(s) 384, 688, 1002
BseMII CTCAG 3 cut(s) 468, 602, 706
BseNI ACTGG 2 cut(s) 878, 1060
BseRI GAGGAG 1 cut(s) 137
BseSI GKGCMC 1 cut(s) 625
BseXI GCAGC 3 cut(s) 144, 401, 681
BsiHKAI GWGCWC 2 cut(s) 129, 554
BsiHKCI CYCGRG 1 cut(s) 618
BslFI GGGAC 5 cut(s) 198, 528, 608, 620, 890
BslI CCNNNNNNNGG 2 cut(s) 202, 411
BsmFI GGGAC 5 cut(s) 198, 528, 608, 620, 890
BsmI GAATGC 1 cut(s) 275
BsoBI CYCGRG 1 cut(s) 618
Bsp119I TTCGAA 1 cut(s) 1020
Bsp1286I GDGCHC 3 cut(s) 129, 554, 625
Bsp143I GATC 5 cut(s) 471, 614, 685, 819, 1036
Bsp19I CCATGG 1 cut(s) 663
BspACI CCGC 1 cut(s) 33
BspCNI CTCAG 3 cut(s) 469, 603, 705
BspLI GGNNCC 5 cut(s) 186, 187, 375, 403, 483
BspMAI CTGCAG 1 cut(s) 134
BspMI ACCTGC 2 cut(s) 4, 565
BspOI GCTAGC 1 cut(s) 978
BspPI GGATC 2 cut(s) 479, 680
BspQI GCTCTTC 1 cut(s) 184
BspT104I TTCGAA 1 cut(s) 1020
BsrDI GCAATG 3 cut(s) 384, 688, 1002
BsrI ACTGG 2 cut(s) 878, 1060
BssECI CCNNGG 3 cut(s) 293, 637, 663
BssMI GATC 5 cut(s) 471, 614, 685, 819, 1036
BssT1I CCWWGG 1 cut(s) 663
Bst2UI CCWGG 5 cut(s) 295, 330, 399, 639, 1073
Bst4CI ACNGT 2 cut(s) 94, 313
Bst6I CTCTTC 2 cut(s) 146, 184
BstBI TTCGAA 1 cut(s) 1020
BstC8I GCNNGC 2 cut(s) 115, 976
BstDEI CTNAG 3 cut(s) 477, 611, 692
BstDSI CCRYGG 1 cut(s) 663
BstF5I GGATG 2 cut(s) 179, 225
BstKTI GATC 5 cut(s) 474, 617, 688, 822, 1039
BstMBI GATC 5 cut(s) 471, 614, 685, 819, 1036
BstMWI GCNNNNNNNGC 3 cut(s) 39, 48, 678
BstNI CCWGG 5 cut(s) 295, 330, 399, 639, 1073
BstNSI RCATGY 1 cut(s) 117
BstSCI CCNGG 5 cut(s) 293, 328, 397, 637, 1071
BstSFI CTRYAG 1 cut(s) 130
BstSLI GKGCMC 1 cut(s) 625
BstV1I GCAGC 3 cut(s) 144, 401, 681
BstX2I RGATCY 2 cut(s) 471, 614
BstYI RGATCY 2 cut(s) 471, 614
BtgI CCRYGG 1 cut(s) 663
BtsCI GGATG 2 cut(s) 179, 225
BtsI GCAGTG 1 cut(s) 323
BtsIMutI CAGTG 2 cut(s) 323, 939
BveI ACCTGC 2 cut(s) 4, 565
Cac8I GCNNGC 2 cut(s) 115, 976
Cfr13I GGNCC 3 cut(s) 185, 374, 652
CseI GACGC 1 cut(s) 119
CsiI ACCWGGT 1 cut(s) 1071
CviAII CATG 7 cut(s) 25, 114, 217, 466, 664, 730, 1042
DdeI CTNAG 3 cut(s) 477, 611, 692
DpnI GATC 5 cut(s) 473, 616, 687, 821, 1038
DpnII GATC 5 cut(s) 471, 614, 685, 819, 1036
Eam1104I CTCTTC 2 cut(s) 146, 184
EarI CTCTTC 2 cut(s) 146, 184
EciI GGCGGA 1 cut(s) 48
Ecl136II GAGCTC 2 cut(s) 127, 552
Eco130I CCWWGG 1 cut(s) 663
Eco24I GRGCYC 2 cut(s) 129, 554
Eco47I GGWCC 3 cut(s) 185, 374, 652
Eco53kI GAGCTC 2 cut(s) 127, 552
Eco57I CTGAAG 1 cut(s) 849
Eco88I CYCGRG 1 cut(s) 618
EcoICRI GAGCTC 2 cut(s) 127, 552
EcoO109I RGGNCCY 2 cut(s) 185, 374
EcoRI GAATTC 1 cut(s) 704
EcoRII CCWGG 5 cut(s) 293, 328, 397, 637, 1071
EcoT14I CCWWGG 1 cut(s) 663
EcoT22I ATGCAT 1 cut(s) 119
EcoT38I GRGCYC 2 cut(s) 129, 554
ErhI CCWWGG 1 cut(s) 663
FaeI CATG 7 cut(s) 28, 117, 220, 469, 667, 733, 1045
FaqI GGGAC 5 cut(s) 198, 528, 608, 620, 890
FatI CATG 7 cut(s) 24, 113, 216, 465, 663, 729, 1041
Fnu4HI GCNGC 3 cut(s) 133, 390, 670
FokI GGATG 2 cut(s) 186, 212
FriOI GRGCYC 2 cut(s) 129, 554
Fsp4HI GCNGC 3 cut(s) 133, 390, 670
FspBI CTAG 2 cut(s) 632, 975
GluI GCNGC 3 cut(s) 133, 390, 670
HgaI GACGC 1 cut(s) 119
Hin1II CATG 7 cut(s) 28, 117, 220, 469, 667, 733, 1045
HindIII AAGCTT 1 cut(s) 858
HinfI GANTC 1 cut(s) 878
HphI GGTGA 2 cut(s) 106, 546
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 8 cut(s) 156, 211, 243, 478, 612, 713, 866, 986
Hpy188III TCNNGA 4 cut(s) 183, 229, 280, 1034
Hpy8I GTNNAC 1 cut(s) 109
Hpy99I CGWCG 2 cut(s) 94, 713
HpyAV CCTTC 5 cut(s) 206, 263, 299, 748, 824
HpyCH4III ACNGT 2 cut(s) 94, 313
HpyCH4IV ACGT 2 cut(s) 236, 358
HpyCH4V TGCA 5 cut(s) 117, 132, 389, 791, 847
HpyF10VI GCNNNNNNNGC 3 cut(s) 39, 48, 678
HpyF3I CTNAG 3 cut(s) 477, 611, 692
HpySE526I ACGT 2 cut(s) 236, 358
Hsp92II CATG 7 cut(s) 28, 117, 220, 469, 667, 733, 1045
KflI GGGWCCC 1 cut(s) 185
Kzo9I GATC 5 cut(s) 471, 614, 685, 819, 1036
LguI GCTCTTC 1 cut(s) 184
LmnI GCTCC 1 cut(s) 124
Lsp1109I GCAGC 3 cut(s) 144, 401, 681
LweI GCATC 1 cut(s) 164
MabI ACCWGGT 1 cut(s) 1071
MaeI CTAG 2 cut(s) 632, 975
MaeII ACGT 2 cut(s) 236, 358
MaeIII GTNAC 3 cut(s) 321, 496, 902
MalI GATC 5 cut(s) 473, 616, 687, 821, 1038
MboI GATC 5 cut(s) 471, 614, 685, 819, 1036
MboII GAAGA 7 cut(s) 11, 62, 133, 171, 365, 444, 1034
MflI RGATCY 2 cut(s) 471, 614
MhlI GDGCHC 3 cut(s) 129, 554, 625
MluCI AATT 4 cut(s) 584, 704, 775, 1004
MlyI GAGTC 1 cut(s) 872
MmeI TCCRAC 2 cut(s) 691, 744
Mph1103I ATGCAT 1 cut(s) 119
MroXI GAANNNNTTC 2 cut(s) 302, 1029
MseI TTAA 3 cut(s) 567, 1068, 1089
MslI CAYNNNNRTG 2 cut(s) 27, 662
MspR9I CCNGG 5 cut(s) 295, 330, 399, 639, 1073
Mva1269I GAATGC 1 cut(s) 275
MvaI CCWGG 5 cut(s) 295, 330, 399, 639, 1073
MwoI GCNNNNNNNGC 3 cut(s) 39, 48, 678
NcoI CCATGG 1 cut(s) 663
NdeII GATC 5 cut(s) 471, 614, 685, 819, 1036
NheI GCTAGC 1 cut(s) 974
NlaIII CATG 7 cut(s) 28, 117, 220, 469, 667, 733, 1045
NlaIV GGNNCC 5 cut(s) 186, 187, 375, 403, 483
NmuCI GTSAC 2 cut(s) 321, 902
NsiI ATGCAT 1 cut(s) 119
NspI RCATGY 1 cut(s) 117
NspV TTCGAA 1 cut(s) 1020
PaeI GCATGC 1 cut(s) 117
PaqCI CACCTGC 1 cut(s) 565
PciSI GCTCTTC 1 cut(s) 184
PctI GAATGC 1 cut(s) 275
PdmI GAANNNNTTC 2 cut(s) 302, 1029
PkrI GCNGC 3 cut(s) 134, 391, 671
PleI GAGTC 1 cut(s) 872
PpsI GAGTC 1 cut(s) 872
PpuMI RGGWCCY 2 cut(s) 185, 374
Psp124BI GAGCTC 2 cut(s) 129, 554
Psp1406I AACGTT 1 cut(s) 236
Psp5II RGGWCCY 2 cut(s) 185, 374
Psp6I CCWGG 5 cut(s) 293, 328, 397, 637, 1071
PspGI CCWGG 5 cut(s) 293, 328, 397, 637, 1071
PspN4I GGNNCC 5 cut(s) 186, 187, 375, 403, 483
PspPI GGNCC 3 cut(s) 185, 374, 652
PspPPI RGGWCCY 2 cut(s) 185, 374
PsrI GAACNNNNNNTAC 1 cut(s) 32
PstI CTGCAG 1 cut(s) 134
PsuI RGATCY 2 cut(s) 471, 614
RseI CAYNNNNRTG 2 cut(s) 27, 662
SacI GAGCTC 2 cut(s) 129, 554
SapI GCTCTTC 1 cut(s) 184
SaqAI TTAA 3 cut(s) 567, 1068, 1089
SatI GCNGC 3 cut(s) 133, 390, 670
Sau3AI GATC 5 cut(s) 471, 614, 685, 819, 1036
Sau96I GGNCC 3 cut(s) 185, 374, 652
SchI GAGTC 1 cut(s) 872
ScrFI CCNGG 5 cut(s) 295, 330, 399, 639, 1073
SduI GDGCHC 3 cut(s) 129, 554, 625
SexAI ACCWGGT 1 cut(s) 1071
SfaNI GCATC 1 cut(s) 164
SfcI CTRYAG 1 cut(s) 130
SfuI TTCGAA 1 cut(s) 1020
SinI GGWCC 3 cut(s) 185, 374, 652
SmiMI CAYNNNNRTG 2 cut(s) 27, 662
SpeI ACTAGT 1 cut(s) 631
SphI GCATGC 1 cut(s) 117
Sse9I AATT 4 cut(s) 584, 704, 775, 1004
SsiI CCGC 1 cut(s) 33
SspMI CTAG 2 cut(s) 632, 975
SstI GAGCTC 2 cut(s) 129, 554
StyD4I CCNGG 5 cut(s) 293, 328, 397, 637, 1071
StyI CCWWGG 1 cut(s) 663
TaaI ACNGT 2 cut(s) 94, 313
TaiI ACGT 2 cut(s) 239, 361
TaqI TCGA 5 cut(s) 89, 348, 822, 1020, 1035
TasI AATT 4 cut(s) 584, 704, 775, 1004
Tru1I TTAA 3 cut(s) 567, 1068, 1089
Tru9I TTAA 3 cut(s) 567, 1068, 1089
TscAI CASTG 2 cut(s) 330, 946
TseFI GTSAC 2 cut(s) 321, 902
TseI GCWGC 3 cut(s) 132, 389, 669
Tsp45I GTSAC 2 cut(s) 321, 902
TspDTI ATGAA 6 cut(s) 41, 366, 373, 437, 585, 1054
TspRI CASTG 2 cut(s) 330, 946
VpaK11BI GGWCC 3 cut(s) 185, 374, 652
XapI RAATTY 1 cut(s) 704
XceI RCATGY 1 cut(s) 117
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
XmnI GAANNNNTTC 2 cut(s) 302, 1029
XspI CTAG 2 cut(s) 632, 975
Zsp2I ATGCAT 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.