Rroxscaffold_4G00325530

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000342
Physical Location & Seq
Forward (+)
57264142 .. 57267422
3281 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00325530.1

Sequence Viewer

Length: 369 bp
ATGGAGGTGGAGCAAGTCCTTCACATGAATGGTGGATGTGGGAGAACAAGCTATTCAAACAACTCGCTTCTTCAAGAACTGATGGAGCTGATCAAGACCGAAGGATCCTTTAGGTTGCAGGACCATCAAGTTTTTAAACATGATTGGGACTCTTTTATAAAGGAAGCTGATAGTGGTCTCGATAAGAAAGCAAGGGCGGGTATACTCTCCACTCACATTAGGTCTGTGGTGGAGCCTCTTCTGATCAGTCACTTTGGAGAGGGAGTCATGGAAGATTTGTTTCGCAGGTTTGAAAAAGATGTTCTTGATCACATGGAAAAGGAGAAGTGCCAGTCTATGGATATAGTTCTATCGCTGACAAAGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

122

Amino Acids

14.04

Weight (kDa)

5.34

Isoelectric Point (pI)

36.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 24 - 121 8.2e-19 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 158
Acc36I ACCTGC 1 cut(s) 276
AccB7I CCANNNNNTGG 1 cut(s) 337
AccI GTMKAC 1 cut(s) 202
AciI CCGC 1 cut(s) 197
AclWI GGATC 2 cut(s) 99, 112
AfiI CCNNNNNNNGG 1 cut(s) 337
AgsI TTSAA 3 cut(s) 57, 74, 293
AluBI AGCT 3 cut(s) 51, 88, 167
AluI AGCT 3 cut(s) 51, 88, 167
Alw26I GTCTC 1 cut(s) 182
AlwI GGATC 2 cut(s) 99, 112
AspS9I GGNCC 1 cut(s) 121
AvaII GGWCC 1 cut(s) 121
BamHI GGATCC 1 cut(s) 104
BccI CCATC 2 cut(s) 76, 132
BclI TGATCA 3 cut(s) 90, 243, 307
BcoDI GTCTC 1 cut(s) 182
BfuAI ACCTGC 1 cut(s) 276
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 1 cut(s) 121
BmiI GGNNCC 2 cut(s) 106, 234
BsaI GGTCTC 1 cut(s) 182
BsaXI ACNNNNNCTCC 2 cut(s) 249, 279
Bsc4I CCNNNNNNNGG 1 cut(s) 337
Bse1I ACTGG 1 cut(s) 331
BseGI GGATG 1 cut(s) 41
BseLI CCNNNNNNNGG 1 cut(s) 337
BseNI ACTGG 1 cut(s) 331
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 337
BsmAI GTCTC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 161
Bso31I GGTCTC 1 cut(s) 182
Bsp143I GATC 4 cut(s) 90, 104, 243, 307
BspACI CCGC 1 cut(s) 197
BspLI GGNNCC 2 cut(s) 106, 234
BspMI ACCTGC 1 cut(s) 276
BspPI GGATC 2 cut(s) 99, 112
BspTNI GGTCTC 1 cut(s) 182
BsrI ACTGG 1 cut(s) 331
BssMI GATC 4 cut(s) 90, 104, 243, 307
BssNAI GTATAC 1 cut(s) 203
Bst1107I GTATAC 1 cut(s) 203
Bst6I CTCTTC 1 cut(s) 243
BstF5I GGATG 1 cut(s) 41
BstKTI GATC 4 cut(s) 93, 107, 246, 310
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 4 cut(s) 90, 104, 243, 307
BstX2I RGATCY 1 cut(s) 104
BstYI RGATCY 1 cut(s) 104
BstZ17I GTATAC 1 cut(s) 203
BtsCI GGATG 1 cut(s) 41
BveI ACCTGC 1 cut(s) 276
Cfr13I GGNCC 1 cut(s) 121
CviAII CATG 4 cut(s) 25, 140, 268, 313
CviJI RGCY 4 cut(s) 51, 88, 167, 235
CviKI_1 RGCY 4 cut(s) 51, 88, 167, 235
DpnI GATC 4 cut(s) 92, 106, 245, 309
DpnII GATC 4 cut(s) 90, 104, 243, 307
DraI TTTAAA 1 cut(s) 136
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
Eco31I GGTCTC 1 cut(s) 182
Eco47I GGWCC 1 cut(s) 121
FaeI CATG 4 cut(s) 28, 143, 271, 316
FaiI YATR 8 cut(s) 26, 141, 158, 203, 269, 314, 338, 344
FalI AAGNNNNNCTT 2 cut(s) 288, 320
FaqI GGGAC 1 cut(s) 161
FatI CATG 4 cut(s) 24, 139, 267, 312
FauI CCCGC 1 cut(s) 190
FbaI TGATCA 3 cut(s) 90, 243, 307
FblI GTMKAC 1 cut(s) 202
FokI GGATG 1 cut(s) 48
Hin1II CATG 4 cut(s) 28, 143, 271, 316
HinfI GANTC 2 cut(s) 149, 264
Hpy166II GTNNAC 1 cut(s) 203
Hpy188I TCNGA 1 cut(s) 243
Hpy188III TCNNGA 4 cut(s) 74, 94, 179, 305
Hpy8I GTNNAC 1 cut(s) 203
HpyAV CCTTC 2 cut(s) 29, 95
HpyCH4V TGCA 1 cut(s) 118
Hsp92II CATG 4 cut(s) 28, 143, 271, 316
Ksp22I TGATCA 3 cut(s) 90, 243, 307
Kzo9I GATC 4 cut(s) 90, 104, 243, 307
LmnI GCTCC 3 cut(s) 10, 85, 232
LpnPI CCDG 3 cut(s) 104, 271, 344
MaeIII GTNAC 1 cut(s) 248
MalI GATC 4 cut(s) 92, 106, 245, 309
MboI GATC 4 cut(s) 90, 104, 243, 307
MboII GAAGA 3 cut(s) 62, 230, 284
MflI RGATCY 1 cut(s) 104
MlyI GAGTC 2 cut(s) 143, 273
MnlI CCTC 2 cut(s) 246, 253
MseI TTAA 1 cut(s) 135
MslI CAYNNNNRTG 1 cut(s) 27
NdeII GATC 4 cut(s) 90, 104, 243, 307
NlaIII CATG 4 cut(s) 28, 143, 271, 316
NlaIV GGNNCC 2 cut(s) 106, 234
NmuCI GTSAC 1 cut(s) 248
PflMI CCANNNNNTGG 1 cut(s) 337
PleI GAGTC 2 cut(s) 143, 272
PpsI GAGTC 2 cut(s) 143, 272
PsiI TTATAA 1 cut(s) 158
PspN4I GGNNCC 2 cut(s) 106, 234
PspPI GGNCC 1 cut(s) 121
PsuI RGATCY 1 cut(s) 104
RseI CAYNNNNRTG 1 cut(s) 27
SaqAI TTAA 1 cut(s) 135
Sau3AI GATC 4 cut(s) 90, 104, 243, 307
Sau96I GGNCC 1 cut(s) 121
SchI GAGTC 2 cut(s) 143, 273
SetI ASST 7 cut(s) 9, 53, 90, 116, 169, 224, 290
SinI GGWCC 1 cut(s) 121
SmiMI CAYNNNNRTG 1 cut(s) 27
SsiI CCGC 1 cut(s) 197
TaqI TCGA 1 cut(s) 180
TaqII GACCGA 1 cut(s) 113
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TseFI GTSAC 1 cut(s) 248
Tsp45I GTSAC 1 cut(s) 248
TspDTI ATGAA 1 cut(s) 41
Van91I CCANNNNNTGG 1 cut(s) 337
VpaK11BI GGWCC 1 cut(s) 121
XmiI GTMKAC 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.