Rorug06G0016700

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000342
Physical Location & Seq
Reverse (-)
2170238 .. 2172813
2576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0016700.1

Sequence Viewer

Length: 837 bp
ATGGGTCGTCGTCGTCTTCTACTATCTGCCTCCATATTCACACTCCTCACCCTCTCGTTCTTCTCAGAAATGGAGTCTGCCTCGTTCAAGATAGTGAACAAGTGCCGCCACACAATCTGGCCGGGTGTTCTCTCCGGCGCCAACAGCCAACCTCTCTCGCCCACCGGCTTCGCGCTCAAGAGCGGCAAGTCCCGGACTTTGTCGGTACCCAAATCATGGTCGGGTCGGATGTGGGCCCGGACCCTCTGCTCCGGATCCTCCCCCGGAAACTTCTCCTGCCTCACCGCTGACTGCGGCTCCGGGAAGATCGAGTGCGCGGGAAGCGGCGCCAAGCCGCCGGCTACTCTAGCCGAGTTCACTCTCAACGGCGCCGACGGCTTGGACTTCTATGACGTCAGCCTCGTCGACGGCTACAACCTCCCGGTGCTGGTGGTGCCGCGTGGCGGGAGGAGAGGCGGGTGCAGCCCCACGGGGTGCTTGGTGGACTTGAACGGCGCGTGCCCCAAGGCGCTGAGGGTCGCGCGTGAGGGGAAGAGTGGGGGCGTGGTGGCGTGTAGGAGCGCGTGCGAGGCGTTTGGGGAGCCGCAGTTTTGTTGCAGTGAGGCGTACGCGACGCCCGACACGTGTTCGCCCTCGGTGTTTTCGCAGTATTTCAAACATGTTTGCCCACGCGCGTATAGCTATGCGTATGATGACAAGACGAGTACGTACACGTGTGCGTCGGCTGACTACATTATTATTTTCTGCCCTTTGCCCCATACCAGTCAAAAGGTGTTGGGAGCACGAAAAGATGGGGCGCCACTACCACTGGTTAATGAGACAATGATGTACTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

278

Amino Acids

29.58

Weight (kDa)

8.75

Isoelectric Point (pI)

44.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 33 - 250 4.6e-82 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 835
AatII GACGTC 1 cut(s) 396
Acc65I GGTACC 1 cut(s) 205
AccB1I GGYRCC 6 cut(s) 137, 205, 326, 368, 433, 796
AccB7I CCANNNNNTGG 1 cut(s) 216
AccBSI CCGCTC 1 cut(s) 183
AccI GTMKAC 1 cut(s) 405
AccIII TCCGGA 1 cut(s) 251
AclWI GGATC 2 cut(s) 249, 262
AcoI YGGCCR 1 cut(s) 119
AcvI CACGTG 2 cut(s) 624, 714
AcyI GRCGYC 6 cut(s) 138, 327, 369, 393, 614, 797
AdeI CACNNNGTG 1 cut(s) 474
AfaI GTAC 5 cut(s) 207, 608, 706, 710, 830
AfiI CCNNNNNNNGG 3 cut(s) 216, 427, 443
AflIII ACRYGT 5 cut(s) 621, 623, 658, 711, 713
AgsI TTSAA 3 cut(s) 88, 490, 655
AluBI AGCT 1 cut(s) 681
AluI AGCT 1 cut(s) 681
Alw21I GWGCWC 1 cut(s) 784
Alw26I GTCTC 1 cut(s) 812
AlwI GGATC 2 cut(s) 249, 262
Aor13HI TCCGGA 1 cut(s) 251
AoxI GGCC 2 cut(s) 119, 234
ApaI GGGCCC 1 cut(s) 238
ApeKI GCWGC 1 cut(s) 462
Asp718I GGTACC 1 cut(s) 205
AspS9I GGNCC 3 cut(s) 234, 235, 240
AsuC2I CCSGG 6 cut(s) 123, 193, 238, 264, 301, 422
AsuHPI GGTGA 2 cut(s) 40, 274
AvaII GGWCC 1 cut(s) 240
BaeGI GKGCMC 2 cut(s) 238, 503
BamHI GGATCC 1 cut(s) 254
BanI GGYRCC 6 cut(s) 137, 205, 326, 368, 433, 796
BanII GRGCYC 1 cut(s) 238
BbrPI CACGTG 2 cut(s) 624, 714
BbsI GAAGAC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 784
BbvCI CCTCAGC 1 cut(s) 512
BbvI GCAGC 1 cut(s) 474
BccI CCATC 1 cut(s) 785
BceAI ACGGC 4 cut(s) 382, 391, 424, 508
BcnI CCSGG 6 cut(s) 123, 193, 238, 264, 301, 422
BcoDI GTCTC 1 cut(s) 812
BfaI CTAG 1 cut(s) 347
BfoI RGCGCY 5 cut(s) 141, 330, 372, 512, 800
BisI GCNGC 8 cut(s) 106, 184, 295, 325, 335, 437, 463, 584
BlsI GCNGC 8 cut(s) 107, 185, 296, 326, 336, 438, 464, 585
Bme1390I CCNGG 6 cut(s) 123, 193, 238, 264, 301, 422
Bme18I GGWCC 1 cut(s) 240
BmgT120I GGNCC 3 cut(s) 234, 235, 240
BmrFI CCNGG 6 cut(s) 123, 193, 238, 264, 301, 422
BpiI GAAGAC 1 cut(s) 8
BplI GAGNNNNNCTC 2 cut(s) 65, 97
Bpu10I CCTNAGC 1 cut(s) 512
BpuEI CTTGAG 1 cut(s) 161
BpuMI CCSGG 6 cut(s) 123, 193, 238, 264, 301, 422
BsaAI YACGTR 3 cut(s) 624, 708, 714
BsaHI GRCGYC 6 cut(s) 138, 327, 369, 393, 614, 797
BsaJI CCNNGG 4 cut(s) 262, 468, 504, 633
BsaWI WCCGGW 1 cut(s) 251
BsaXI ACNNNNNCTCC 4 cut(s) 281, 311, 572, 602
Bsc4I CCNNNNNNNGG 3 cut(s) 216, 427, 443
Bse118I RCCGGY 2 cut(s) 164, 337
Bse1I ACTGG 2 cut(s) 762, 813
BseAI TCCGGA 1 cut(s) 251
BseDI CCNNGG 4 cut(s) 262, 468, 504, 633
BseGI GGATG 1 cut(s) 234
BseLI CCNNNNNNNGG 3 cut(s) 216, 427, 443
BseMII CTCAG 2 cut(s) 78, 503
BseNI ACTGG 2 cut(s) 762, 813
BseRI GAGGAG 2 cut(s) 35, 463
BseSI GKGCMC 2 cut(s) 238, 503
BseXI GCAGC 1 cut(s) 474
BsgI GTGCAG 1 cut(s) 481
BshFI GGCC 2 cut(s) 121, 236
BshNI GGYRCC 6 cut(s) 137, 205, 326, 368, 433, 796
BsiHKAI GWGCWC 1 cut(s) 784
BsiWI CGTACG 1 cut(s) 606
BslFI GGGAC 1 cut(s) 175
BslI CCNNNNNNNGG 3 cut(s) 216, 427, 443
BsmAI GTCTC 1 cut(s) 812
BsmFI GGGAC 1 cut(s) 175
BsnI GGCC 2 cut(s) 121, 236
Bsp120I GGGCCC 1 cut(s) 234
Bsp1286I GDGCHC 3 cut(s) 238, 503, 784
Bsp13I TCCGGA 1 cut(s) 251
Bsp143I GATC 2 cut(s) 254, 306
BspANI GGCC 2 cut(s) 121, 236
BspCNI CTCAG 2 cut(s) 77, 504
BspEI TCCGGA 1 cut(s) 251
BspPI GGATC 2 cut(s) 249, 262
BspT107I GGYRCC 6 cut(s) 137, 205, 326, 368, 433, 796
BsrBI CCGCTC 1 cut(s) 183
BsrFI RCCGGY 2 cut(s) 164, 337
BsrI ACTGG 2 cut(s) 762, 813
BssAI RCCGGY 2 cut(s) 164, 337
BssECI CCNNGG 4 cut(s) 262, 468, 504, 633
BssMI GATC 2 cut(s) 254, 306
BssNI GRCGYC 6 cut(s) 138, 327, 369, 393, 614, 797
BssT1I CCWWGG 1 cut(s) 504
Bst6I CTCTTC 1 cut(s) 527
BstACI GRCGYC 6 cut(s) 138, 327, 369, 393, 614, 797
BstBAI YACGTR 3 cut(s) 624, 708, 714
BstC8I GCNNGC 3 cut(s) 339, 499, 565
BstDEI CTNAG 2 cut(s) 64, 512
BstDSI CCRYGG 1 cut(s) 468
BstF5I GGATG 1 cut(s) 234
BstH2I RGCGCY 5 cut(s) 141, 330, 372, 512, 800
BstKTI GATC 2 cut(s) 257, 309
BstMAI GTCTC 1 cut(s) 812
BstMBI GATC 2 cut(s) 254, 306
BstMWI GCNNNNNNNGC 8 cut(s) 144, 321, 347, 375, 433, 462, 569, 678
BstNSI RCATGY 1 cut(s) 662
BstSCI CCNGG 6 cut(s) 121, 191, 236, 262, 299, 420
BstSLI GKGCMC 2 cut(s) 238, 503
BstSNI TACGTA 1 cut(s) 708
BstV1I GCAGC 1 cut(s) 474
BstV2I GAAGAC 1 cut(s) 8
BstX2I RGATCY 1 cut(s) 254
BstYI RGATCY 1 cut(s) 254
BsuRI GGCC 2 cut(s) 121, 236
BtgI CCRYGG 1 cut(s) 468
BtsCI GGATG 1 cut(s) 234
BtsI GCAGTG 1 cut(s) 604
BtsIMutI CAGTG 2 cut(s) 604, 806
Cac8I GCNNGC 3 cut(s) 339, 499, 565
Cfr10I RCCGGY 2 cut(s) 164, 337
Cfr13I GGNCC 3 cut(s) 234, 235, 240
CseI GACGC 2 cut(s) 622, 708
Csp6I GTAC 5 cut(s) 206, 607, 705, 709, 829
CviAII CATG 2 cut(s) 216, 659
CviQI GTAC 5 cut(s) 206, 607, 705, 709, 829
DdeI CTNAG 2 cut(s) 64, 512
DinI GGCGCC 4 cut(s) 139, 328, 370, 798
DpnI GATC 2 cut(s) 256, 308
DpnII GATC 2 cut(s) 254, 306
DraIII CACNNNGTG 1 cut(s) 474
EaeI YGGCCR 1 cut(s) 119
Eam1104I CTCTTC 1 cut(s) 527
EarI CTCTTC 1 cut(s) 527
Eco105I TACGTA 1 cut(s) 708
Eco130I CCWWGG 1 cut(s) 504
Eco24I GRGCYC 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 240
Eco72I CACGTG 2 cut(s) 624, 714
EcoT14I CCWWGG 1 cut(s) 504
EcoT38I GRGCYC 1 cut(s) 238
EgeI GGCGCC 4 cut(s) 139, 328, 370, 798
EheI GGCGCC 4 cut(s) 139, 328, 370, 798
ErhI CCWWGG 1 cut(s) 504
FaeI CATG 2 cut(s) 219, 662
FaiI YATR 9 cut(s) 35, 217, 390, 660, 678, 684, 690, 759, 835
FaqI GGGAC 1 cut(s) 175
FatI CATG 2 cut(s) 215, 658
FauI CCCGC 3 cut(s) 310, 437, 449
FblI GTMKAC 1 cut(s) 405
Fnu4HI GCNGC 8 cut(s) 106, 184, 295, 325, 335, 437, 463, 584
FokI GGATG 1 cut(s) 241
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 8 cut(s) 106, 184, 295, 325, 335, 437, 463, 584
FspBI CTAG 1 cut(s) 347
GluI GCNGC 8 cut(s) 106, 184, 295, 325, 335, 437, 463, 584
HaeII RGCGCY 5 cut(s) 141, 330, 372, 512, 800
HaeIII GGCC 2 cut(s) 121, 236
HgaI GACGC 2 cut(s) 622, 708
Hin1I GRCGYC 6 cut(s) 138, 327, 369, 393, 614, 797
Hin1II CATG 2 cut(s) 219, 662
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HinfI GANTC 1 cut(s) 74
HphI GGTGA 2 cut(s) 40, 274
Hpy166II GTNNAC 5 cut(s) 97, 357, 406, 484, 711
Hpy188I TCNGA 2 cut(s) 67, 228
Hpy188III TCNNGA 3 cut(s) 88, 178, 252
Hpy8I GTNNAC 5 cut(s) 97, 357, 406, 484, 711
Hpy99I CGWCG 7 cut(s) 12, 15, 377, 407, 410, 616, 724
HpyCH4IV ACGT 4 cut(s) 393, 623, 707, 713
HpyCH4V TGCA 2 cut(s) 462, 597
HpyF10VI GCNNNNNNNGC 8 cut(s) 144, 321, 347, 375, 433, 462, 569, 678
HpyF3I CTNAG 2 cut(s) 64, 512
HpySE526I ACGT 4 cut(s) 393, 623, 707, 713
Hsp92I GRCGYC 6 cut(s) 138, 327, 369, 393, 614, 797
Hsp92II CATG 2 cut(s) 219, 662
KasI GGCGCC 4 cut(s) 137, 326, 368, 796
Kpn2I TCCGGA 1 cut(s) 251
KpnI GGTACC 1 cut(s) 209
KroI GCCGGC 1 cut(s) 337
KroNI GCCGGC 1 cut(s) 339
Kzo9I GATC 2 cut(s) 254, 306
LmnI GCTCC 5 cut(s) 254, 302, 558, 580, 779
Lsp1109I GCAGC 1 cut(s) 474
MaeI CTAG 1 cut(s) 347
MaeII ACGT 4 cut(s) 393, 623, 707, 713
MalI GATC 2 cut(s) 256, 308
MbiI CCGCTC 1 cut(s) 183
MboI GATC 2 cut(s) 254, 306
MboII GAAGA 4 cut(s) 8, 52, 316, 544
MflI RGATCY 1 cut(s) 254
MhlI GDGCHC 3 cut(s) 238, 503, 784
Mly113I GGCGCC 4 cut(s) 138, 327, 369, 797
MlyI GAGTC 1 cut(s) 83
MmeI TCCRAC 1 cut(s) 206
MroI TCCGGA 1 cut(s) 251
MroNI GCCGGC 1 cut(s) 337
MseI TTAA 1 cut(s) 813
MspA1I CMGCKG 1 cut(s) 287
MspR9I CCNGG 6 cut(s) 123, 193, 238, 264, 301, 422
MwoI GCNNNNNNNGC 8 cut(s) 144, 321, 347, 375, 433, 462, 569, 678
NaeI GCCGGC 1 cut(s) 339
NarI GGCGCC 4 cut(s) 138, 327, 369, 797
NciI CCSGG 6 cut(s) 123, 193, 238, 264, 301, 422
NdeII GATC 2 cut(s) 254, 306
NgoMIV GCCGGC 1 cut(s) 337
NlaIII CATG 2 cut(s) 219, 662
NmeAIII GCCGAG 1 cut(s) 376
NspI RCATGY 1 cut(s) 662
PciI ACATGT 1 cut(s) 658
PcsI WCGNNNNNNNCGW 3 cut(s) 399, 615, 620
PdiI GCCGGC 1 cut(s) 339
Pfl23II CGTACG 1 cut(s) 606
PflFI GACNNNGTC 1 cut(s) 199
PflMI CCANNNNNTGG 1 cut(s) 216
PfoI TCCNGGA 2 cut(s) 191, 299
PkrI GCNGC 8 cut(s) 107, 185, 296, 326, 336, 438, 464, 585
PleI GAGTC 1 cut(s) 82
PluTI GGCGCC 4 cut(s) 141, 330, 372, 800
PmaCI CACGTG 2 cut(s) 624, 714
PmlI CACGTG 2 cut(s) 624, 714
PpsI GAGTC 1 cut(s) 82
Ppu21I YACGTR 3 cut(s) 624, 708, 714
PscI ACATGT 1 cut(s) 658
PsiI TTATAA 1 cut(s) 835
PspCI CACGTG 2 cut(s) 624, 714
PspLI CGTACG 1 cut(s) 606
PspOMI GGGCCC 1 cut(s) 234
PspPI GGNCC 3 cut(s) 234, 235, 240
PsuI RGATCY 1 cut(s) 254
PsyI GACNNNGTC 1 cut(s) 199
RsaI GTAC 5 cut(s) 207, 608, 706, 710, 830
RsaNI GTAC 5 cut(s) 206, 607, 705, 709, 829
SalI GTCGAC 1 cut(s) 404
SaqAI TTAA 1 cut(s) 813
SatI GCNGC 8 cut(s) 106, 184, 295, 325, 335, 437, 463, 584
Sau3AI GATC 2 cut(s) 254, 306
Sau96I GGNCC 3 cut(s) 234, 235, 240
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 6 cut(s) 123, 193, 238, 264, 301, 422
SduI GDGCHC 3 cut(s) 238, 503, 784
SetI ASST 8 cut(s) 154, 396, 420, 626, 683, 710, 716, 774
SfoI GGCGCC 4 cut(s) 139, 328, 370, 798
SgrDI CGTCGACG 1 cut(s) 404
SinI GGWCC 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
SnaBI TACGTA 1 cut(s) 708
SspDI GGCGCC 4 cut(s) 137, 326, 368, 796
SspMI CTAG 1 cut(s) 347
StyD4I CCNGG 6 cut(s) 121, 191, 236, 262, 299, 420
StyI CCWWGG 1 cut(s) 504
TaiI ACGT 4 cut(s) 396, 626, 710, 716
TaqI TCGA 2 cut(s) 309, 405
TatI WGTACW 1 cut(s) 828
TauI GCSGC 7 cut(s) 108, 186, 297, 327, 337, 439, 586
Tru1I TTAA 1 cut(s) 813
Tru9I TTAA 1 cut(s) 813
TscAI CASTG 2 cut(s) 604, 813
TseI GCWGC 1 cut(s) 462
TspRI CASTG 2 cut(s) 604, 813
Tth111I GACNNNGTC 1 cut(s) 199
Van91I CCANNNNNTGG 1 cut(s) 216
VpaK11BI GGWCC 1 cut(s) 240
XceI RCATGY 1 cut(s) 662
XcmI CCANNNNNNNNNTGG 1 cut(s) 475
XmiI GTMKAC 1 cut(s) 405
XspI CTAG 1 cut(s) 347
ZraI GACGTC 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.