AT5G04380

carboxyl

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000342
Physical Location & Seq
Forward (+)
1234712 .. 1236391
1680 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G04380.3

Sequence Viewer

Length: 1137 bp
ATGTCTCTGTGTTTAATATTATGCAGGTGTGATTGTAAAAGTGAGTATAAAGTGGATGAAGAGAGAAGTAGTAAATATCCTTTTGTGGGTGCTCTATGTATGAATGGTGGAGATGTAGACAACAGTTACACCACCAAGTCTCTTCTTCAGAAAAGAGTTTTATCAATAACCAATCCGATCTTAGTTAAAAACACAGAGGAAATGTTGACAAACTTGGACTTTCCTAAATGCATTAAGGTAGCCGATTTAGGTTGTTCTTCAGGACAAAACACGTTTTTGGCCATGTCTGAGATCGTCAACACAATCAATGTATTGTGTCAAAAATGGAACCAAAGCCGGCCGGAGATAGATTGTTGTTTGAATGATCTCCCTACTAACGATTTCAACACAACGTTCAAGTTCATAACTTTCTTCAACAAGAAACTCACAAGCAACGGATCGTGCTTCGTCTCTGGAGTCCCTGGTTCCTTTTACTCGAGGCTCTTCCCTCGCAAGAGTCTCCATTTCATATATTCAATTTACAGTATTCATTTCCTCTCTAAGGTTCCCGATGGATTGGAGAAGAACAAGATGAGTGTGTACATAACAAGTTCAAGTCCTCTAAGTGAATACAAGGCTTACTTGAATCAATTCAAAAGAGATTTTACAACATTTCTAAGAATGCGTTCTGAAGAGATGGTACATAATGGACGTATGGTTCTCACACTAATCGGCAGAAACACTCTAGATAATCCATTGTATAGGGATTGTTGTCATTGTTGGACATTGTTATCCAATTCTCTCCGTGACTTAGTCTTCGAGGTATATTCGTTCAAAATGCCATTTTATGATCCGAATGAGGAAGAAGTGAAGGAGATTATAAGAAATGAGGGATCCTTCCAAATAAATGACTTGGAGATGCATGAATTTGATCTCGGCCATAGTAAGGAGAAATGTAGCTTACAATCACACAAAGCTAAAGCAGGGCAAAAAGAAGCTAGTTGTATACGAGCGGTGACTGAAACAATGCTCGTAGCTCACTTTGGAGATGACATTATCGATGCATTGTTTCACAAGTATGCACATCATGTGTCTCAGCATGCTAGCTGCAGGGTAAAAACGAGTGTAACTCTAATAGTTTCACTGGTTCGGAAATAA

Protein Analysis

378

Amino Acids

43.25

Weight (kDa)

8.05

Isoelectric Point (pI)

49.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 68 - 388 4.8e-121 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 860
AarI CACCTGC 1 cut(s) 15
Acc36I ACCTGC 1 cut(s) 15
AccBSI CCGCTC 1 cut(s) 992
AccI GTMKAC 2 cut(s) 117, 985
AciI CCGC 1 cut(s) 992
AclI AACGTT 1 cut(s) 392
AclWI GGATC 4 cut(s) 445, 824, 867, 880
AcoI YGGCCR 3 cut(s) 279, 338, 916
AcsI RAATTY 1 cut(s) 905
AcuI CTGAAG 3 cut(s) 131, 243, 690
AfaI GTAC 2 cut(s) 581, 681
AfiI CCNNNNNNNGG 3 cut(s) 86, 541, 925
AflIII ACRYGT 1 cut(s) 270
AgsI TTSAA 9 cut(s) 361, 385, 397, 415, 516, 594, 625, 634, 814
AjnI CCWGG 1 cut(s) 460
AloI GAACNNNNNNTCC 2 cut(s) 681, 713
AluBI AGCT 5 cut(s) 939, 956, 977, 1016, 1086
AluI AGCT 5 cut(s) 939, 956, 977, 1016, 1086
Alw21I GWGCWC 1 cut(s) 94
Alw26I GTCTC 5 cut(s) 9, 144, 454, 503, 1077
AlwI GGATC 4 cut(s) 445, 824, 867, 880
Ama87I CYCGRG 1 cut(s) 475
AoxI GGCC 3 cut(s) 279, 338, 916
ApeKI GCWGC 1 cut(s) 1086
ApoI RAATTY 1 cut(s) 905
ArsI GACNNNNNNTTYG 2 cut(s) 779, 811
Asp700I GAANNNNTTC 2 cut(s) 629, 664
AsuHPI GGTGA 1 cut(s) 1006
AsuNHI GCTAGC 1 cut(s) 1082
AvaI CYCGRG 1 cut(s) 475
BalI TGGCCA 1 cut(s) 281
BamHI GGATCC 1 cut(s) 872
BarI GAAGNNNNNNTAC 2 cut(s) 663, 695
BbsI GAAGAC 1 cut(s) 787
Bbv12I GWGCWC 1 cut(s) 94
BbvI GCAGC 1 cut(s) 1073
BccI CCATC 2 cut(s) 545, 670
BciT130I CCWGG 1 cut(s) 462
BcoDI GTCTC 5 cut(s) 9, 144, 454, 503, 1077
BfaI CTAG 3 cut(s) 725, 978, 1083
BfmI CTRYAG 1 cut(s) 1087
BfuAI ACCTGC 1 cut(s) 15
BisI GCNGC 1 cut(s) 1087
BlsI GCNGC 1 cut(s) 1088
Bme1390I CCNGG 1 cut(s) 462
BmeT110I CYCGRG 1 cut(s) 475
BmiI GGNNCC 4 cut(s) 329, 466, 546, 874
BmrFI CCNGG 1 cut(s) 462
BmsI GCATC 2 cut(s) 888, 1030
BmtI GCTAGC 1 cut(s) 1086
BpiI GAAGAC 1 cut(s) 787
BplI GAGNNNNNCTC 2 cut(s) 1093, 1125
BpmI CTGGAG 1 cut(s) 474
Bsa29I ATCGAT 1 cut(s) 1038
BsaJI CCNNGG 1 cut(s) 460
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 541, 925
Bse118I RCCGGY 1 cut(s) 336
Bse1I ACTGG 1 cut(s) 1128
BseBI CCWGG 1 cut(s) 462
BseCI ATCGAT 1 cut(s) 1038
BseDI CCNNGG 1 cut(s) 460
BseGI GGATG 1 cut(s) 61
BseLI CCNNNNNNNGG 3 cut(s) 86, 541, 925
BseMII CTCAG 2 cut(s) 279, 1088
BseNI ACTGG 1 cut(s) 1128
BseX3I CGGCCG 1 cut(s) 338
BseXI GCAGC 1 cut(s) 1073
Bsh1285I CGRYCG 1 cut(s) 341
BshFI GGCC 3 cut(s) 281, 340, 918
BshVI ATCGAT 1 cut(s) 1038
BsiEI CGRYCG 1 cut(s) 341
BsiHKAI GWGCWC 1 cut(s) 94
BsiHKCI CYCGRG 1 cut(s) 475
BsiSI CCGG 2 cut(s) 337, 341
BslFI GGGAC 1 cut(s) 443
BslI CCNNNNNNNGG 3 cut(s) 86, 541, 925
BsmAI GTCTC 5 cut(s) 9, 144, 454, 503, 1077
BsmBI CGTCTC 1 cut(s) 454
BsmFI GGGAC 1 cut(s) 443
BsmI GAATGC 1 cut(s) 666
BsnI GGCC 3 cut(s) 281, 340, 918
BsoBI CYCGRG 1 cut(s) 475
Bsp1286I GDGCHC 1 cut(s) 94
Bsp1407I TGTACA 1 cut(s) 579
Bsp143I GATC 7 cut(s) 177, 291, 364, 437, 829, 872, 910
BspACI CCGC 1 cut(s) 992
BspANI GGCC 3 cut(s) 281, 340, 918
BspCNI CTCAG 2 cut(s) 280, 1087
BspDI ATCGAT 1 cut(s) 1038
BspLI GGNNCC 4 cut(s) 329, 466, 546, 874
BspMAI CTGCAG 1 cut(s) 1091
BspMI ACCTGC 1 cut(s) 15
BspOI GCTAGC 1 cut(s) 1086
BspPI GGATC 4 cut(s) 445, 824, 867, 880
BspQI GCTCTTC 1 cut(s) 488
BsrBI CCGCTC 1 cut(s) 992
BsrFI RCCGGY 1 cut(s) 336
BsrGI TGTACA 1 cut(s) 579
BsrI ACTGG 1 cut(s) 1128
BssAI RCCGGY 1 cut(s) 336
BssECI CCNNGG 1 cut(s) 460
BssMI GATC 7 cut(s) 177, 291, 364, 437, 829, 872, 910
BssNAI GTATAC 1 cut(s) 986
Bst1107I GTATAC 1 cut(s) 986
Bst2UI CCWGG 1 cut(s) 462
Bst4CI ACNGT 2 cut(s) 125, 524
Bst6I CTCTTC 4 cut(s) 54, 147, 488, 666
BstAUI TGTACA 1 cut(s) 579
BstC8I GCNNGC 3 cut(s) 338, 1080, 1084
BstDEI CTNAG 7 cut(s) 181, 288, 540, 602, 656, 790, 1074
BstENI CCTNNNNNAGG 1 cut(s) 539
BstF5I GGATG 1 cut(s) 61
BstKTI GATC 7 cut(s) 180, 294, 367, 440, 832, 875, 913
BstMAI GTCTC 5 cut(s) 9, 144, 454, 503, 1077
BstMBI GATC 7 cut(s) 177, 291, 364, 437, 829, 872, 910
BstMCI CGRYCG 1 cut(s) 341
BstNI CCWGG 1 cut(s) 462
BstNSI RCATGY 1 cut(s) 1082
BstSCI CCNGG 1 cut(s) 460
BstSFI CTRYAG 1 cut(s) 1087
BstV1I GCAGC 1 cut(s) 1073
BstV2I GAAGAC 1 cut(s) 787
BstX2I RGATCY 1 cut(s) 872
BstYI RGATCY 1 cut(s) 872
BstZ17I GTATAC 1 cut(s) 986
BstZI CGGCCG 1 cut(s) 338
Bsu15I ATCGAT 1 cut(s) 1038
BsuRI GGCC 3 cut(s) 281, 340, 918
BsuTUI ATCGAT 1 cut(s) 1038
BtsCI GGATG 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 1121
BveI ACCTGC 1 cut(s) 15
Cac8I GCNNGC 3 cut(s) 338, 1080, 1084
Cfr10I RCCGGY 1 cut(s) 336
ClaI ATCGAT 1 cut(s) 1038
Csp6I GTAC 2 cut(s) 580, 680
CviAII CATG 4 cut(s) 283, 902, 1067, 1079
CviQI GTAC 2 cut(s) 580, 680
DdeI CTNAG 7 cut(s) 181, 288, 540, 602, 656, 790, 1074
DpnI GATC 7 cut(s) 179, 293, 366, 439, 831, 874, 912
DpnII GATC 7 cut(s) 177, 291, 364, 437, 829, 872, 910
EaeI YGGCCR 3 cut(s) 279, 338, 916
EagI CGGCCG 1 cut(s) 338
Eam1104I CTCTTC 4 cut(s) 54, 147, 488, 666
EarI CTCTTC 4 cut(s) 54, 147, 488, 666
EclXI CGGCCG 1 cut(s) 338
Eco52I CGGCCG 1 cut(s) 338
Eco57I CTGAAG 3 cut(s) 131, 243, 690
Eco88I CYCGRG 1 cut(s) 475
EcoNI CCTNNNNNAGG 1 cut(s) 539
EcoRII CCWGG 1 cut(s) 460
EcoT22I ATGCAT 3 cut(s) 233, 903, 1045
Esp3I CGTCTC 1 cut(s) 454
FaeI CATG 4 cut(s) 286, 905, 1070, 1082
FalI AAGNNNNNCTT 2 cut(s) 605, 637
FaqI GGGAC 1 cut(s) 443
FatI CATG 4 cut(s) 282, 901, 1066, 1078
FblI GTMKAC 2 cut(s) 117, 985
Fnu4HI GCNGC 1 cut(s) 1087
FokI GGATG 1 cut(s) 68
Fsp4HI GCNGC 1 cut(s) 1087
FspBI CTAG 3 cut(s) 725, 978, 1083
GluI GCNGC 1 cut(s) 1087
GsuI CTGGAG 1 cut(s) 474
HaeIII GGCC 3 cut(s) 281, 340, 918
HapII CCGG 2 cut(s) 337, 341
Hin1II CATG 4 cut(s) 286, 905, 1070, 1082
HincII GTYRAC 2 cut(s) 207, 298
HindII GTYRAC 2 cut(s) 207, 298
HinfI GANTC 3 cut(s) 456, 496, 625
HpaII CCGG 2 cut(s) 337, 341
HphI GGTGA 1 cut(s) 1006
Hpy166II GTNNAC 5 cut(s) 118, 207, 298, 580, 986
Hpy188I TCNGA 6 cut(s) 150, 177, 289, 670, 834, 1131
Hpy188III TCNNGA 4 cut(s) 261, 453, 548, 725
Hpy8I GTNNAC 5 cut(s) 118, 207, 298, 580, 986
HpyAV CCTTC 2 cut(s) 844, 886
HpyCH4III ACNGT 2 cut(s) 125, 524
HpyCH4IV ACGT 3 cut(s) 272, 392, 691
HpyCH4V TGCA 6 cut(s) 24, 231, 901, 1043, 1061, 1089
HpyF3I CTNAG 7 cut(s) 181, 288, 540, 602, 656, 790, 1074
HpySE526I ACGT 3 cut(s) 272, 392, 691
Hsp92II CATG 4 cut(s) 286, 905, 1070, 1082
KroI GCCGGC 1 cut(s) 336
KroNI GCCGGC 1 cut(s) 338
Kzo9I GATC 7 cut(s) 177, 291, 364, 437, 829, 872, 910
LguI GCTCTTC 1 cut(s) 488
Lsp1109I GCAGC 1 cut(s) 1073
LweI GCATC 2 cut(s) 888, 1030
MaeI CTAG 3 cut(s) 725, 978, 1083
MaeII ACGT 3 cut(s) 272, 392, 691
MaeIII GTNAC 4 cut(s) 125, 785, 994, 1105
MalI GATC 7 cut(s) 179, 293, 366, 439, 831, 874, 912
MbiI CCGCTC 1 cut(s) 992
MboI GATC 7 cut(s) 177, 291, 364, 437, 829, 872, 910
MflI RGATCY 1 cut(s) 872
MhlI GDGCHC 1 cut(s) 94
MlsI TGGCCA 1 cut(s) 281
MluCI AATT 4 cut(s) 516, 629, 775, 905
MluNI TGGCCA 1 cut(s) 281
MlyI GAGTC 2 cut(s) 465, 505
MmeI TCCRAC 1 cut(s) 740
MnlI CCTC 8 cut(s) 190, 471, 498, 545, 609, 793, 832, 862
Mox20I TGGCCA 1 cut(s) 281
Mph1103I ATGCAT 3 cut(s) 233, 903, 1045
MroNI GCCGGC 1 cut(s) 336
MroXI GAANNNNTTC 2 cut(s) 629, 664
MscI TGGCCA 1 cut(s) 281
MseI TTAA 3 cut(s) 14, 186, 234
MslI CAYNNNNRTG 1 cut(s) 1056
Msp20I TGGCCA 1 cut(s) 281
MspI CCGG 2 cut(s) 337, 341
MspR9I CCNGG 1 cut(s) 462
Mva1269I GAATGC 1 cut(s) 666
MvaI CCWGG 1 cut(s) 462
NaeI GCCGGC 1 cut(s) 338
NdeII GATC 7 cut(s) 177, 291, 364, 437, 829, 872, 910
NgoMIV GCCGGC 1 cut(s) 336
NheI GCTAGC 1 cut(s) 1082
NlaIII CATG 4 cut(s) 286, 905, 1070, 1082
NlaIV GGNNCC 4 cut(s) 329, 466, 546, 874
NmeAIII GCCGAG 1 cut(s) 894
NmuCI GTSAC 2 cut(s) 785, 994
NsiI ATGCAT 3 cut(s) 233, 903, 1045
NspI RCATGY 1 cut(s) 1082
PaeI GCATGC 1 cut(s) 1082
PaeR7I CTCGAG 1 cut(s) 475
PaqCI CACCTGC 1 cut(s) 15
PciSI GCTCTTC 1 cut(s) 488
PctI GAATGC 1 cut(s) 666
PdiI GCCGGC 1 cut(s) 338
PdmI GAANNNNTTC 2 cut(s) 629, 664
PfeI GAWTC 1 cut(s) 625
PflFI GACNNNGTC 1 cut(s) 791
PkrI GCNGC 1 cut(s) 1088
PleI GAGTC 2 cut(s) 464, 504
PpsI GAGTC 2 cut(s) 464, 504
PsiI TTATAA 1 cut(s) 860
Psp1406I AACGTT 1 cut(s) 392
Psp6I CCWGG 1 cut(s) 460
PspGI CCWGG 1 cut(s) 460
PspN4I GGNNCC 4 cut(s) 329, 466, 546, 874
PspXI VCTCGAGB 1 cut(s) 475
PstI CTGCAG 1 cut(s) 1091
PsuI RGATCY 1 cut(s) 872
PsyI GACNNNGTC 1 cut(s) 791
RsaI GTAC 2 cut(s) 581, 681
RsaNI GTAC 2 cut(s) 580, 680
RseI CAYNNNNRTG 1 cut(s) 1056
SapI GCTCTTC 1 cut(s) 488
SaqAI TTAA 3 cut(s) 14, 186, 234
SatI GCNGC 1 cut(s) 1087
Sau3AI GATC 7 cut(s) 177, 291, 364, 437, 829, 872, 910
SchI GAGTC 2 cut(s) 465, 505
ScrFI CCNGG 1 cut(s) 462
SduI GDGCHC 1 cut(s) 94
SfaNI GCATC 2 cut(s) 888, 1030
SfcI CTRYAG 1 cut(s) 1087
Sfr274I CTCGAG 1 cut(s) 475
SlaI CTCGAG 1 cut(s) 475
SmiMI CAYNNNNRTG 1 cut(s) 1056
SmlI CTYRAG 1 cut(s) 475
SmoI CTYRAG 1 cut(s) 475
SphI GCATGC 1 cut(s) 1082
Sse9I AATT 4 cut(s) 516, 629, 775, 905
SsiI CCGC 1 cut(s) 992
SspI AATATT 1 cut(s) 18
SspMI CTAG 3 cut(s) 725, 978, 1083
StyD4I CCNGG 1 cut(s) 460
TaaI ACNGT 2 cut(s) 125, 524
TaiI ACGT 3 cut(s) 275, 395, 694
TaqI TCGA 3 cut(s) 476, 798, 1038
TasI AATT 4 cut(s) 516, 629, 775, 905
TatI WGTACW 1 cut(s) 579
TfiI GAWTC 1 cut(s) 625
Tru1I TTAA 3 cut(s) 14, 186, 234
Tru9I TTAA 3 cut(s) 14, 186, 234
TscAI CASTG 1 cut(s) 1128
TseFI GTSAC 2 cut(s) 785, 994
TseI GCWGC 1 cut(s) 1086
Tsp45I GTSAC 2 cut(s) 785, 994
TspDTI ATGAA 6 cut(s) 72, 116, 391, 496, 518, 918
TspGWI ACGGA 2 cut(s) 450, 773
TspRI CASTG 1 cut(s) 1128
Tth111I GACNNNGTC 1 cut(s) 791
XagI CCTNNNNNAGG 1 cut(s) 539
XapI RAATTY 1 cut(s) 905
XbaI TCTAGA 1 cut(s) 724
XceI RCATGY 1 cut(s) 1082
XhoI CTCGAG 1 cut(s) 475
XmiI GTMKAC 2 cut(s) 117, 985
XmnI GAANNNNTTC 2 cut(s) 629, 664
XspI CTAG 3 cut(s) 725, 978, 1083
Zsp2I ATGCAT 3 cut(s) 233, 903, 1045
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.