Rmu_sc0016482.1_g000001

SAM dependent carboxyl methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016482.1
Physical Location & Seq
Forward (+)
1 .. 1027
1027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016482.1_g000001.1.cds

Sequence Viewer

Length: 360 bp
ggattgattgaaaagcaaaacttagactacttcaatattccatactttgaacctacaatggaggaactgatgaagctgatcgagaccgaaggatcctttaggttgcatgaccatcaagtttttaaacatgattgggactcttttataaaggaagctgatagtggtctcgataagaaagcaagggcgggaatactctccactcacattaggtctgtggtggagcctcttctggtcagtcactttggagagggagtcatggaagatttgtttcgcaggtatgaaagagatgttcttgatcacatggaaaaggagaagtgccagtctatagatatagttctatcgttgacaaaggagtgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

119

Amino Acids

13.96

Weight (kDa)

5.06

Isoelectric Point (pI)

46.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 146
Acc36I ACCTGC 1 cut(s) 264
AciI CCGC 1 cut(s) 185
AclWI GGATC 2 cut(s) 87, 100
AgsI TTSAA 3 cut(s) 11, 34, 50
AluBI AGCT 2 cut(s) 76, 155
AluI AGCT 2 cut(s) 76, 155
Alw26I GTCTC 2 cut(s) 77, 170
AlwI GGATC 2 cut(s) 87, 100
BamHI GGATCC 1 cut(s) 92
BccI CCATC 1 cut(s) 120
BclI TGATCA 1 cut(s) 295
BcoDI GTCTC 2 cut(s) 77, 170
BfmI CTRYAG 1 cut(s) 324
BfuAI ACCTGC 1 cut(s) 264
BmiI GGNNCC 2 cut(s) 94, 222
BsaI GGTCTC 2 cut(s) 77, 170
BsaXI ACNNNNNCTCC 2 cut(s) 237, 267
Bse1I ACTGG 1 cut(s) 319
BseNI ACTGG 1 cut(s) 319
BslFI GGGAC 1 cut(s) 149
BsmAI GTCTC 2 cut(s) 77, 170
BsmFI GGGAC 1 cut(s) 149
Bso31I GGTCTC 2 cut(s) 77, 170
Bsp143I GATC 3 cut(s) 78, 92, 295
BspACI CCGC 1 cut(s) 185
BspLI GGNNCC 2 cut(s) 94, 222
BspMI ACCTGC 1 cut(s) 264
BspPI GGATC 2 cut(s) 87, 100
BspTNI GGTCTC 2 cut(s) 77, 170
BsrI ACTGG 1 cut(s) 319
BssMI GATC 3 cut(s) 78, 92, 295
Bst6I CTCTTC 1 cut(s) 231
BstDEI CTNAG 1 cut(s) 22
BstKTI GATC 3 cut(s) 81, 95, 298
BstMAI GTCTC 2 cut(s) 77, 170
BstMBI GATC 3 cut(s) 78, 92, 295
BstSFI CTRYAG 1 cut(s) 324
BstX2I RGATCY 1 cut(s) 92
BstYI RGATCY 1 cut(s) 92
BveI ACCTGC 1 cut(s) 264
CviAII CATG 4 cut(s) 107, 128, 256, 301
CviJI RGCY 3 cut(s) 76, 155, 223
CviKI_1 RGCY 3 cut(s) 76, 155, 223
DdeI CTNAG 1 cut(s) 22
DpnI GATC 3 cut(s) 80, 94, 297
DpnII GATC 3 cut(s) 78, 92, 295
DraI TTTAAA 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
Eco31I GGTCTC 2 cut(s) 77, 170
FaeI CATG 4 cut(s) 110, 131, 259, 304
FaiI YATR 9 cut(s) 43, 108, 129, 146, 257, 279, 302, 326, 332
FalI AAGNNNNNCTT 1 cut(s) 37
FaqI GGGAC 1 cut(s) 149
FatI CATG 4 cut(s) 106, 127, 255, 300
FauI CCCGC 1 cut(s) 178
FbaI TGATCA 1 cut(s) 295
Hin1II CATG 4 cut(s) 110, 131, 259, 304
HincII GTYRAC 1 cut(s) 345
HindII GTYRAC 1 cut(s) 345
HinfI GANTC 2 cut(s) 137, 252
Hpy166II GTNNAC 1 cut(s) 345
Hpy188III TCNNGA 3 cut(s) 82, 167, 293
Hpy8I GTNNAC 1 cut(s) 345
HpyAV CCTTC 1 cut(s) 83
HpyCH4V TGCA 1 cut(s) 106
HpyF3I CTNAG 1 cut(s) 22
Hsp92II CATG 4 cut(s) 110, 131, 259, 304
Ksp22I TGATCA 1 cut(s) 295
Kzo9I GATC 3 cut(s) 78, 92, 295
LmnI GCTCC 1 cut(s) 220
LpnPI CCDG 3 cut(s) 215, 259, 332
MaeIII GTNAC 1 cut(s) 236
MalI GATC 3 cut(s) 80, 94, 297
MboI GATC 3 cut(s) 78, 92, 295
MboII GAAGA 2 cut(s) 218, 272
MflI RGATCY 1 cut(s) 92
MlyI GAGTC 2 cut(s) 131, 261
MnlI CCTC 3 cut(s) 55, 234, 241
MseI TTAA 1 cut(s) 123
NdeII GATC 3 cut(s) 78, 92, 295
NlaIII CATG 4 cut(s) 110, 131, 259, 304
NlaIV GGNNCC 2 cut(s) 94, 222
NmuCI GTSAC 1 cut(s) 236
PleI GAGTC 2 cut(s) 131, 260
PpsI GAGTC 2 cut(s) 131, 260
PsiI TTATAA 1 cut(s) 146
PspN4I GGNNCC 2 cut(s) 94, 222
PsuI RGATCY 1 cut(s) 92
SaqAI TTAA 1 cut(s) 123
Sau3AI GATC 3 cut(s) 78, 92, 295
SchI GAGTC 2 cut(s) 131, 261
SetI ASST 6 cut(s) 55, 78, 104, 157, 212, 278
SfcI CTRYAG 1 cut(s) 324
SsiI CCGC 1 cut(s) 185
SspI AATATT 1 cut(s) 37
TaqI TCGA 2 cut(s) 81, 168
TaqII GACCGA 1 cut(s) 101
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TseFI GTSAC 1 cut(s) 236
Tsp45I GTSAC 1 cut(s) 236
TspDTI ATGAA 2 cut(s) 86, 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.