Rh1AG061600

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000342
Physical Location & Seq
Reverse (-)
10136842 .. 10138873
2032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG061600.1

Sequence Viewer

Length: 1089 bp
ATGGAGGTGGAGCAAGTCCTTCACATGAATGGCGGATGTGGGAGAACAAGCTATTCAAACAACTCGCTTCATCAAAGAGCAGCGATTTCATGGGTGAAGCCCATTTTAGATGCAAGCATAGAGAAGCTGTGTTGCTCCAACCTCCCTGCAGAGTGTTTGAGGATAGCTGACTTGGGATGTTCTTCAGGACCAAACACCCTTTTTTTCGTATCAAATGTCATCGACATGATCCAGAATACATGTCAAAAATTGAACTGTCGACCTCCATCGCTCCAAGTATTTTTGAATGATCTTCCCCAAAACGACTTTAACACAGTTTTCAAATCATTGCCAAGCTTCTACAAAAAACTCGAAGAAAGGAAGTGGCTGGAGCCATGCTTCATTGCAGGAATGCCCGGTTCTTTCCATGGCAGGCTCTTTCCTAAGAGTTCTATCAACTTTTTTCACTCTTCTTACTCTCTGCACTGGATCTCTAAGGTTCCAGAAGGTTTGGTAACAAAAGGAGGACTCAACGAGGGAAACATATGCACAGCCAAGACAAGCCCACCTTCTGTGTTTAGTGAATACTTTGAGCAATTTAAAAAAGACTTCACAGTGTTTCTAAGGTCTCGTGCAGAAGAGTTGGTCCCTCAGGGTAGAATGGTCCTCACAATCAGGGGGAGAATAAATAGTCATGAACCAGCTTTATTTGAAATTCTTGGATTGAAAATCAATGATATGGTTTTAGAGGGTTTGATTGAAAAGAAAAACCTAGACTACTTCAATATTCCATACTATGAACCTACAATGGAGGAACTGATGGAGCTGATCGAGACCGAAGGATCCTTTAGGTTGCCGGACCATCAAGTGTTTAAACGTGATTGGGACTCTTCTATAAAGGAAGCTGATAGTGGTCTCGGTAAGAAAGCAAGGGCGGGTATACTTTCCACTCACATTAGGTCTGTGGTGGAGCCTCTTCTGATCAGTCACTTTGGAGAGGGACTCATGGAAGATTTGTTTCACAGGTTTGAAAAAGATGTTCTTGATCACATGGAAAAGGAGAAGTGCCAGTCTATAGATATAGTTCTATCGTTGACAAAGGAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

362

Amino Acids

41.21

Weight (kDa)

5.92

Isoelectric Point (pI)

43.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 39 - 360 9.1e-118 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 259, 919
AciI CCGC 2 cut(s) 33, 914
AclWI GGATC 4 cut(s) 223, 476, 816, 829
AcsI RAATTY 1 cut(s) 693
AcuI CTGAAG 1 cut(s) 168
AflIII ACRYGT 1 cut(s) 239
AgsI TTSAA 9 cut(s) 57, 253, 286, 322, 692, 706, 740, 763, 1010
AluBI AGCT 7 cut(s) 51, 127, 167, 336, 683, 805, 884
AluI AGCT 7 cut(s) 51, 127, 167, 336, 683, 805, 884
Alw26I GTCTC 3 cut(s) 612, 806, 899
AlwI GGATC 4 cut(s) 223, 476, 816, 829
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 1 cut(s) 693
AspS9I GGNCC 4 cut(s) 188, 625, 643, 838
AsuC2I CCSGG 1 cut(s) 396
AsuHPI GGTGA 1 cut(s) 106
AvaII GGWCC 4 cut(s) 188, 625, 643, 838
AxyI CCTNAGG 1 cut(s) 630
BamHI GGATCC 1 cut(s) 821
BauI CACGAG 1 cut(s) 609
BbvI GCAGC 1 cut(s) 92
BccI CCATC 3 cut(s) 274, 793, 849
BclI TGATCA 2 cut(s) 960, 1024
BcnI CCSGG 1 cut(s) 396
BcoDI GTCTC 3 cut(s) 612, 806, 899
BfaI CTAG 1 cut(s) 752
BfmI CTRYAG 2 cut(s) 147, 1053
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme1390I CCNGG 1 cut(s) 396
Bme18I GGWCC 4 cut(s) 188, 625, 643, 838
BmgT120I GGNCC 4 cut(s) 188, 625, 643, 838
BmiI GGNNCC 5 cut(s) 372, 480, 627, 823, 951
BmrFI CCNGG 1 cut(s) 396
BmsI GCATC 1 cut(s) 100
BplI GAGNNNNNCTC 2 cut(s) 966, 998
BpmI CTGGAG 1 cut(s) 389
BpuMI CCSGG 1 cut(s) 396
BsaI GGTCTC 3 cut(s) 612, 806, 899
BsaJI CCNNGG 1 cut(s) 406
Bse1I ACTGG 2 cut(s) 470, 1048
Bse21I CCTNAGG 1 cut(s) 630
Bse3DI GCAATG 2 cut(s) 326, 381
BseDI CCNNGG 1 cut(s) 406
BseGI GGATG 2 cut(s) 41, 182
BseMI GCAATG 2 cut(s) 326, 381
BseMII CTCAG 1 cut(s) 644
BseNI ACTGG 2 cut(s) 470, 1048
BseXI GCAGC 1 cut(s) 92
BsgI GTGCAG 2 cut(s) 446, 633
BsiSI CCGG 2 cut(s) 396, 836
BslFI GGGAC 3 cut(s) 611, 878, 993
BsmAI GTCTC 3 cut(s) 612, 806, 899
BsmFI GGGAC 3 cut(s) 611, 878, 993
BsmI GAATGC 1 cut(s) 396
Bso31I GGTCTC 3 cut(s) 612, 806, 899
Bsp143I GATC 7 cut(s) 228, 289, 468, 807, 821, 960, 1024
Bsp19I CCATGG 1 cut(s) 406
BspACI CCGC 2 cut(s) 33, 914
BspCNI CTCAG 1 cut(s) 643
BspHI TCATGA 1 cut(s) 673
BspLI GGNNCC 5 cut(s) 372, 480, 627, 823, 951
BspMAI CTGCAG 1 cut(s) 151
BspPI GGATC 4 cut(s) 223, 476, 816, 829
BspTNI GGTCTC 3 cut(s) 612, 806, 899
BsrDI GCAATG 2 cut(s) 326, 381
BsrI ACTGG 2 cut(s) 470, 1048
BssECI CCNNGG 1 cut(s) 406
BssMI GATC 7 cut(s) 228, 289, 468, 807, 821, 960, 1024
BssNAI GTATAC 1 cut(s) 920
BssSI CACGAG 1 cut(s) 609
BssT1I CCWWGG 1 cut(s) 406
Bst1107I GTATAC 1 cut(s) 920
Bst2BI CACGAG 1 cut(s) 609
Bst4CI ACNGT 3 cut(s) 257, 316, 595
Bst6I CTCTTC 4 cut(s) 454, 612, 874, 960
BstC8I GCNNGC 2 cut(s) 115, 413
BstDEI CTNAG 4 cut(s) 423, 474, 602, 630
BstDSI CCRYGG 1 cut(s) 406
BstF5I GGATG 2 cut(s) 41, 182
BstKTI GATC 7 cut(s) 231, 292, 471, 810, 824, 963, 1027
BstMAI GTCTC 3 cut(s) 612, 806, 899
BstMBI GATC 7 cut(s) 228, 289, 468, 807, 821, 960, 1024
BstNSI RCATGY 1 cut(s) 243
BstSCI CCNGG 1 cut(s) 394
BstSFI CTRYAG 2 cut(s) 147, 1053
BstV1I GCAGC 1 cut(s) 92
BstX2I RGATCY 2 cut(s) 468, 821
BstYI RGATCY 2 cut(s) 468, 821
BstZ17I GTATAC 1 cut(s) 920
Bsu36I CCTNAGG 1 cut(s) 630
BtgI CCRYGG 1 cut(s) 406
BtgZI GCGATG 1 cut(s) 252
BtsCI GGATG 2 cut(s) 41, 182
BtsIMutI CAGTG 2 cut(s) 463, 600
Cac8I GCNNGC 2 cut(s) 115, 413
CciI TCATGA 1 cut(s) 673
Cfr13I GGNCC 4 cut(s) 188, 625, 643, 838
CviAII CATG 9 cut(s) 25, 90, 226, 240, 375, 407, 674, 985, 1030
DdeI CTNAG 4 cut(s) 423, 474, 602, 630
DpnI GATC 7 cut(s) 230, 291, 470, 809, 823, 962, 1026
DpnII GATC 7 cut(s) 228, 289, 468, 807, 821, 960, 1024
DraI TTTAAA 2 cut(s) 580, 853
Eam1104I CTCTTC 4 cut(s) 454, 612, 874, 960
EarI CTCTTC 4 cut(s) 454, 612, 874, 960
EciI GGCGGA 1 cut(s) 48
Eco130I CCWWGG 1 cut(s) 406
Eco31I GGTCTC 3 cut(s) 612, 806, 899
Eco47I GGWCC 4 cut(s) 188, 625, 643, 838
Eco57I CTGAAG 1 cut(s) 168
Eco81I CCTNAGG 1 cut(s) 630
EcoT14I CCWWGG 1 cut(s) 406
ErhI CCWWGG 1 cut(s) 406
FaeI CATG 9 cut(s) 28, 93, 229, 243, 378, 410, 677, 988, 1033
FalI AAGNNNNNCTT 4 cut(s) 532, 564, 1005, 1037
FaqI GGGAC 3 cut(s) 611, 878, 993
FatI CATG 9 cut(s) 24, 89, 225, 239, 374, 406, 673, 984, 1029
FauI CCCGC 1 cut(s) 907
FauNDI CATATG 1 cut(s) 524
FbaI TGATCA 2 cut(s) 960, 1024
FblI GTMKAC 2 cut(s) 259, 919
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 2 cut(s) 48, 189
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 1 cut(s) 752
GluI GCNGC 1 cut(s) 81
GsuI CTGGAG 1 cut(s) 389
HapII CCGG 2 cut(s) 396, 836
Hin1II CATG 9 cut(s) 28, 93, 229, 243, 378, 410, 677, 988, 1033
HincII GTYRAC 2 cut(s) 260, 1074
HindII GTYRAC 2 cut(s) 260, 1074
HindIII AAGCTT 1 cut(s) 334
HinfI GANTC 3 cut(s) 507, 866, 981
HpaII CCGG 2 cut(s) 396, 836
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 3 cut(s) 260, 920, 1074
Hpy188I TCNGA 1 cut(s) 960
Hpy188III TCNNGA 6 cut(s) 186, 232, 482, 674, 811, 1022
Hpy8I GTNNAC 3 cut(s) 260, 920, 1074
HpyAV CCTTC 4 cut(s) 29, 479, 558, 812
HpyCH4III ACNGT 3 cut(s) 257, 316, 595
HpyCH4IV ACGT 1 cut(s) 856
HpyCH4V TGCA 6 cut(s) 113, 149, 386, 463, 528, 614
HpyF3I CTNAG 4 cut(s) 423, 474, 602, 630
HpySE526I ACGT 1 cut(s) 856
Hsp92II CATG 9 cut(s) 28, 93, 229, 243, 378, 410, 677, 988, 1033
Ksp22I TGATCA 2 cut(s) 960, 1024
Kzo9I GATC 7 cut(s) 228, 289, 468, 807, 821, 960, 1024
LmnI GCTCC 6 cut(s) 10, 140, 276, 370, 802, 949
Lsp1109I GCAGC 1 cut(s) 92
LweI GCATC 1 cut(s) 100
MaeI CTAG 1 cut(s) 752
MaeII ACGT 1 cut(s) 856
MaeIII GTNAC 2 cut(s) 493, 965
MalI GATC 7 cut(s) 230, 291, 470, 809, 823, 962, 1026
MboI GATC 7 cut(s) 228, 289, 468, 807, 821, 960, 1024
MboII GAAGA 8 cut(s) 174, 284, 365, 441, 629, 861, 947, 1001
MflI RGATCY 2 cut(s) 468, 821
MluCI AATT 3 cut(s) 248, 575, 693
MlyI GAGTC 3 cut(s) 501, 860, 975
MmeI TCCRAC 1 cut(s) 162
MseI TTAA 3 cut(s) 309, 579, 852
MslI CAYNNNNRTG 2 cut(s) 27, 224
MspI CCGG 2 cut(s) 396, 836
MspR9I CCNGG 1 cut(s) 396
MssI GTTTAAAC 1 cut(s) 853
Mva1269I GAATGC 1 cut(s) 396
NciI CCSGG 1 cut(s) 396
NcoI CCATGG 1 cut(s) 406
NdeI CATATG 1 cut(s) 524
NdeII GATC 7 cut(s) 228, 289, 468, 807, 821, 960, 1024
NlaIII CATG 9 cut(s) 28, 93, 229, 243, 378, 410, 677, 988, 1033
NlaIV GGNNCC 5 cut(s) 372, 480, 627, 823, 951
NmuCI GTSAC 1 cut(s) 965
NspI RCATGY 1 cut(s) 243
PagI TCATGA 1 cut(s) 673
PciI ACATGT 1 cut(s) 239
PctI GAATGC 1 cut(s) 396
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 3 cut(s) 501, 860, 975
PmeI GTTTAAAC 1 cut(s) 853
PpsI GAGTC 3 cut(s) 501, 860, 975
PscI ACATGT 1 cut(s) 239
PspN4I GGNNCC 5 cut(s) 372, 480, 627, 823, 951
PspPI GGNCC 4 cut(s) 188, 625, 643, 838
PstI CTGCAG 1 cut(s) 151
PsuI RGATCY 2 cut(s) 468, 821
RseI CAYNNNNRTG 2 cut(s) 27, 224
SalI GTCGAC 1 cut(s) 258
SaqAI TTAA 3 cut(s) 309, 579, 852
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 7 cut(s) 228, 289, 468, 807, 821, 960, 1024
Sau96I GGNCC 4 cut(s) 188, 625, 643, 838
SchI GAGTC 3 cut(s) 501, 860, 975
ScrFI CCNGG 1 cut(s) 396
SfaNI GCATC 1 cut(s) 100
SfcI CTRYAG 2 cut(s) 147, 1053
SinI GGWCC 4 cut(s) 188, 625, 643, 838
SmiMI CAYNNNNRTG 2 cut(s) 27, 224
Sse9I AATT 3 cut(s) 248, 575, 693
SsiI CCGC 2 cut(s) 33, 914
SspI AATATT 1 cut(s) 766
SspMI CTAG 1 cut(s) 752
StyD4I CCNGG 1 cut(s) 394
StyI CCWWGG 1 cut(s) 406
TaaI ACNGT 3 cut(s) 257, 316, 595
TaiI ACGT 1 cut(s) 859
TaqI TCGA 4 cut(s) 222, 259, 351, 810
TaqII GACCGA 1 cut(s) 830
TasI AATT 3 cut(s) 248, 575, 693
Tru1I TTAA 3 cut(s) 309, 579, 852
Tru9I TTAA 3 cut(s) 309, 579, 852
TscAI CASTG 2 cut(s) 470, 600
TseFI GTSAC 1 cut(s) 965
TseI GCWGC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 965
TspDTI ATGAA 6 cut(s) 41, 59, 78, 370, 690, 792
TspRI CASTG 2 cut(s) 470, 600
VpaK11BI GGWCC 4 cut(s) 188, 625, 643, 838
XapI RAATTY 1 cut(s) 693
XceI RCATGY 1 cut(s) 243
XmiI GTMKAC 2 cut(s) 259, 919
XspI CTAG 1 cut(s) 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.