Rroxscaffold_7G00202850

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000342
Physical Location & Seq
Reverse (-)
51280129 .. 51280649
521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00202850.1

Sequence Viewer

Length: 438 bp
ATGGGCAGCATAAATAGCAAAGATCCCCTCTGCATTTGGGAATTTGTCGGATTAAAACTCCATGACATGGTTTTAGATGGTTTGATTGAAGAGGAAAAATTGGACACATTCAATTTGCCATACTACACACCAACAACGGATGAGGTGAAAGAGGTTGTCGAGGCTGAAGGTTCTTTTACCCTGCAAAACCTCGAAGTTTTCAGAAATGACTGGGACTCTTATATAAAACAAGCAAACTGTGGCTTTGACAAGAATGCGAGGGCAGCAATACTGTCCACTGACATAAGAGCTGTGGGAGAGCCTATTCTGGCCAGCCAATTCGGAGAGGAAGCCATGGACGATTTGTTTCGTAGGTTTGAAGAAGATGTTCTTGATCACATGGAAAAGGAGAAGTGCCAGTTCATCAACCTGGTTATCTCGTTAACTAAGAAGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

145

Amino Acids

16.69

Weight (kDa)

4.5

Isoelectric Point (pI)

36.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 10 - 143 3.3e-36 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 67
AclWI GGATC 1 cut(s) 17
AcoI YGGCCR 1 cut(s) 309
AcsI RAATTY 1 cut(s) 41
AcuI CTGAAG 1 cut(s) 186
AfiI CCNNNNNNNGG 1 cut(s) 67
AgsI TTSAA 3 cut(s) 89, 112, 359
AjnI CCWGG 1 cut(s) 408
AluBI AGCT 1 cut(s) 290
AluI AGCT 1 cut(s) 290
AlwI GGATC 1 cut(s) 17
AoxI GGCC 1 cut(s) 309
ApeKI GCWGC 2 cut(s) 6, 263
ApoI RAATTY 1 cut(s) 41
Asp700I GAANNNNTTC 1 cut(s) 366
AsuHPI GGTGA 1 cut(s) 157
BalI TGGCCA 1 cut(s) 311
BbvI GCAGC 2 cut(s) 18, 275
BccI CCATC 1 cut(s) 71
BciT130I CCWGG 1 cut(s) 410
BclI TGATCA 1 cut(s) 373
BisI GCNGC 2 cut(s) 7, 264
BlsI GCNGC 2 cut(s) 8, 265
Bme1390I CCNGG 1 cut(s) 410
BmrFI CCNGG 1 cut(s) 410
BmrI ACTGGG 1 cut(s) 220
BmuI ACTGGG 1 cut(s) 220
BsaJI CCNNGG 1 cut(s) 333
Bsc4I CCNNNNNNNGG 1 cut(s) 67
Bse1I ACTGG 2 cut(s) 215, 397
BseBI CCWGG 1 cut(s) 410
BseDI CCNNGG 1 cut(s) 333
BseGI GGATG 1 cut(s) 145
BseLI CCNNNNNNNGG 1 cut(s) 67
BseNI ACTGG 2 cut(s) 215, 397
BseXI GCAGC 2 cut(s) 18, 275
BshFI GGCC 1 cut(s) 311
BslFI GGGAC 1 cut(s) 227
BslI CCNNNNNNNGG 1 cut(s) 67
BsmFI GGGAC 1 cut(s) 227
BsmI GAATGC 1 cut(s) 259
BsnI GGCC 1 cut(s) 311
Bsp143I GATC 2 cut(s) 22, 373
Bsp19I CCATGG 1 cut(s) 333
BspANI GGCC 1 cut(s) 311
BspPI GGATC 1 cut(s) 17
BsrI ACTGG 2 cut(s) 215, 397
BssECI CCNNGG 1 cut(s) 333
BssMI GATC 2 cut(s) 22, 373
BssT1I CCWWGG 1 cut(s) 333
Bst2UI CCWGG 1 cut(s) 410
Bst4CI ACNGT 2 cut(s) 239, 273
Bst6I CTCTTC 1 cut(s) 84
BstC8I GCNNGC 1 cut(s) 313
BstDEI CTNAG 1 cut(s) 426
BstDSI CCRYGG 1 cut(s) 333
BstF5I GGATG 1 cut(s) 145
BstKTI GATC 2 cut(s) 25, 376
BstMBI GATC 2 cut(s) 22, 373
BstMWI GCNNNNNNNGC 2 cut(s) 15, 263
BstNI CCWGG 1 cut(s) 410
BstSCI CCNGG 1 cut(s) 408
BstV1I GCAGC 2 cut(s) 18, 275
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
BsuRI GGCC 1 cut(s) 311
BtgI CCRYGG 1 cut(s) 333
BtsCI GGATG 1 cut(s) 145
BtsIMutI CAGTG 1 cut(s) 276
Cac8I GCNNGC 1 cut(s) 313
CsiI ACCWGGT 1 cut(s) 408
CviAII CATG 4 cut(s) 62, 67, 334, 379
CviJI RGCY 7 cut(s) 164, 243, 290, 301, 311, 315, 332
CviKI_1 RGCY 7 cut(s) 164, 243, 290, 301, 311, 315, 332
DdeI CTNAG 1 cut(s) 426
DpnI GATC 2 cut(s) 24, 375
DpnII GATC 2 cut(s) 22, 373
EaeI YGGCCR 1 cut(s) 309
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco130I CCWWGG 1 cut(s) 333
Eco57I CTGAAG 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 408
EcoT14I CCWWGG 1 cut(s) 333
ErhI CCWWGG 1 cut(s) 333
FaeI CATG 4 cut(s) 65, 70, 337, 382
FaiI YATR 9 cut(s) 11, 63, 68, 121, 222, 224, 284, 335, 380
FalI AAGNNNNNCTT 2 cut(s) 354, 386
FaqI GGGAC 1 cut(s) 227
FatI CATG 4 cut(s) 61, 66, 333, 378
FbaI TGATCA 1 cut(s) 373
Fnu4HI GCNGC 2 cut(s) 7, 264
FokI GGATG 1 cut(s) 152
Fsp4HI GCNGC 2 cut(s) 7, 264
GluI GCNGC 2 cut(s) 7, 264
HaeIII GGCC 1 cut(s) 311
Hin1II CATG 4 cut(s) 65, 70, 337, 382
HincII GTYRAC 1 cut(s) 423
HindII GTYRAC 1 cut(s) 423
HinfI GANTC 1 cut(s) 215
HpaI GTTAAC 1 cut(s) 423
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 2 cut(s) 276, 423
Hpy188I TCNGA 3 cut(s) 50, 203, 323
Hpy188III TCNNGA 1 cut(s) 371
Hpy8I GTNNAC 2 cut(s) 276, 423
HpyAV CCTTC 1 cut(s) 161
HpyCH4III ACNGT 2 cut(s) 239, 273
HpyCH4V TGCA 2 cut(s) 33, 184
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 263
HpyF3I CTNAG 1 cut(s) 426
Hsp92II CATG 4 cut(s) 65, 70, 337, 382
Ksp22I TGATCA 1 cut(s) 373
KspAI GTTAAC 1 cut(s) 423
Kzo9I GATC 2 cut(s) 22, 373
LpnPI CCDG 7 cut(s) 194, 196, 293, 325, 395, 410, 422
Lsp1109I GCAGC 2 cut(s) 18, 275
MabI ACCWGGT 1 cut(s) 408
MalI GATC 2 cut(s) 24, 375
MboI GATC 2 cut(s) 22, 373
MboII GAAGA 3 cut(s) 101, 371, 374
MflI RGATCY 1 cut(s) 22
MlsI TGGCCA 1 cut(s) 311
MluCI AATT 4 cut(s) 41, 98, 112, 317
MluNI TGGCCA 1 cut(s) 311
MlyI GAGTC 1 cut(s) 209
MmeI TCCRAC 1 cut(s) 28
MnlI CCTC 8 cut(s) 38, 85, 136, 145, 154, 200, 252, 319
Mox20I TGGCCA 1 cut(s) 311
MroXI GAANNNNTTC 1 cut(s) 366
MscI TGGCCA 1 cut(s) 311
MseI TTAA 2 cut(s) 53, 422
Msp20I TGGCCA 1 cut(s) 311
MspR9I CCNGG 1 cut(s) 410
Mva1269I GAATGC 1 cut(s) 259
MvaI CCWGG 1 cut(s) 410
MwoI GCNNNNNNNGC 2 cut(s) 15, 263
NcoI CCATGG 1 cut(s) 333
NdeII GATC 2 cut(s) 22, 373
NlaIII CATG 4 cut(s) 65, 70, 337, 382
PctI GAATGC 1 cut(s) 259
PdmI GAANNNNTTC 1 cut(s) 366
PflMI CCANNNNNTGG 1 cut(s) 67
PkrI GCNGC 2 cut(s) 8, 265
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
Psp6I CCWGG 1 cut(s) 408
PspGI CCWGG 1 cut(s) 408
PsuI RGATCY 1 cut(s) 22
SaqAI TTAA 2 cut(s) 53, 422
SatI GCNGC 2 cut(s) 7, 264
Sau3AI GATC 2 cut(s) 22, 373
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 1 cut(s) 410
SetI ASST 7 cut(s) 147, 156, 172, 192, 292, 356, 411
SexAI ACCWGGT 1 cut(s) 408
Sse9I AATT 4 cut(s) 41, 98, 112, 317
StyD4I CCNGG 1 cut(s) 408
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 2 cut(s) 239, 273
TaqI TCGA 2 cut(s) 159, 192
TasI AATT 4 cut(s) 41, 98, 112, 317
Tru1I TTAA 2 cut(s) 53, 422
Tru9I TTAA 2 cut(s) 53, 422
TscAI CASTG 1 cut(s) 283
TseI GCWGC 2 cut(s) 6, 263
TspDTI ATGAA 1 cut(s) 391
TspGWI ACGGA 1 cut(s) 152
TspRI CASTG 1 cut(s) 283
Van91I CCANNNNNTGG 1 cut(s) 67
XapI RAATTY 1 cut(s) 41
XmnI GAANNNNTTC 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.