pycom10g05680

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000342
Physical Location & Seq
Reverse (-)
6122579 .. 6124521
1943 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g05680.2

Sequence Viewer

Length: 1185 bp
ATGATAATTTTATTATGCAGCTCTTATAGCAGAATAGGCACCAGAATTAAGAGTGTAGAGAAGCATTATTTGAGAACACAAACAAAAATGGAGGTAGAGCAAGTGCTTCACATGAATGGAGGAATTGGGAAAACAAGCTATGCAACCAACTCTCTACTTCAAAGAGCTGTGATTTCGATGGTGAAGCCCATAGTTAAGGCAAGCATAGAGCAGCTTTGCAGCACACTCTTCTCTGACTGTTTGAAAATAGCAGACTTGGGATGCTCTTCCGGACCCAACACCCTTTTGGCGGTATCAGATATCATACACAACATCCATGCCACCTTCCAAAAACTGAACCGTCCGTCTCCTTCACTCCAAGCCTTCTTGAATGATCTTCCCGGGAACGATTTCAACACTGTGTTCAGGTCCTTGCCAGGGTTCTACAAGAAACTTGAGGAAGAACAGAAATTGGGGCCATGTTTCATTACTGCAATGCCTGGTTCATTCTATGGCAGGCTCTTTCCAAACAATTCTCTCCACTTTGTTCACTCTAATTATGCCCTTATGTGGATCTCTGAGGCTCCAAAAGGTTTGCTGACCAAGGAAGGAGAGGGATTAAACAAGAAGAACATATGCATAGCAAAAGCAAGCCCATATGCTGTGTATAAGTTGTATTTGGAGCAATTCAAAAAGGACTTTACAGTGTTTTTGAGGTCACGAGCAGACGAGCTGGTCCCCGGAGGAAGTATGGTCCTCACCACAATGGGCAGCATAAAGAGCCATGAACCACTTTGCATTTGGGAAGTTGTCGGACTCAAACTCAATGATATGGTTTTAGAGGGTTTGATTGAGAAGGAAAAACTGGAGATCTTCAATCTGCCATATTATGCACCAACAACAAAGGAGGTTGAAGATGTAATCGAGGCTGATGATCGATCTTTTACTTTGCAAAGCCTTGAAGTTTTCAAAAATGATTGGGACTCTTATATAAAGCATGCTGACAGTGGCCTTGATAAAAGGGCAAGGGCTGCCATACTTGCCACTGAAATAAGGGCTGTGGGAGAGCCTATTCTGGCAACCCAATTCGGAGAAGCAGCTATGGACGATTTGTTTCACCGGTTTGAAGAAGATGTCCTTGAACACATGGAAATGGAGAATTGCCAGTACATTAACCTGGTAATCTCGTTGACAAAGAAGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

395

Amino Acids

44.38

Weight (kDa)

6.15

Isoelectric Point (pI)

43.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 713
AccB1I GGYRCC 1 cut(s) 38
AccIII TCCGGA 1 cut(s) 269
AciI CCGC 1 cut(s) 290
AclWI GGATC 1 cut(s) 560
AfaI GTAC 1 cut(s) 1148
AfiI CCNNNNNNNGG 3 cut(s) 289, 417, 549
AgeI ACCGGT 1 cut(s) 1098
AjnI CCWGG 3 cut(s) 415, 478, 1155
AluBI AGCT 6 cut(s) 21, 138, 167, 214, 712, 1079
AluI AGCT 6 cut(s) 21, 138, 167, 214, 712, 1079
Alw26I GTCTC 1 cut(s) 351
AlwI GGATC 1 cut(s) 560
Ama87I CYCGRG 1 cut(s) 380
Aor13HI TCCGGA 1 cut(s) 269
AoxI GGCC 2 cut(s) 455, 988
ApeKI GCWGC 6 cut(s) 18, 211, 219, 750, 1010, 1076
AsiGI ACCGGT 1 cut(s) 1098
Asp700I GAANNNNTTC 1 cut(s) 389
AspS9I GGNCC 5 cut(s) 272, 408, 455, 715, 733
AsuC2I CCSGG 3 cut(s) 381, 382, 720
AsuHPI GGTGA 3 cut(s) 193, 730, 1088
AvaI CYCGRG 1 cut(s) 380
AvaII GGWCC 4 cut(s) 272, 408, 715, 733
BanI GGYRCC 1 cut(s) 38
BauI CACGAG 1 cut(s) 699
BbvI GCAGC 6 cut(s) 30, 223, 231, 762, 997, 1088
BccI CCATC 1 cut(s) 172
BciT130I CCWGG 3 cut(s) 417, 480, 1157
BcnI CCSGG 3 cut(s) 381, 382, 720
BcoDI GTCTC 1 cut(s) 351
BglII AGATCT 1 cut(s) 849
BisI GCNGC 6 cut(s) 19, 212, 220, 751, 1011, 1077
BlsI GCNGC 6 cut(s) 20, 213, 221, 752, 1012, 1078
Bme1390I CCNGG 6 cut(s) 381, 382, 417, 480, 720, 1157
Bme18I GGWCC 4 cut(s) 272, 408, 715, 733
BmeT110I CYCGRG 1 cut(s) 380
BmgT120I GGNCC 5 cut(s) 272, 408, 455, 715, 733
BmiI GGNNCC 5 cut(s) 40, 274, 456, 564, 717
BmrFI CCNGG 6 cut(s) 381, 382, 417, 480, 720, 1157
BmsI GCATC 1 cut(s) 251
BpmI CTGGAG 1 cut(s) 866
BpuEI CTTGAG 1 cut(s) 455
BpuMI CCSGG 3 cut(s) 381, 382, 720
Bsa29I ATCGAT 1 cut(s) 916
BsaJI CCNNGG 4 cut(s) 380, 416, 582, 718
BsaWI WCCGGW 2 cut(s) 269, 1098
Bsc4I CCNNNNNNNGG 3 cut(s) 289, 417, 549
Bse118I RCCGGY 1 cut(s) 1098
Bse1I ACTGG 2 cut(s) 849, 1144
Bse3DI GCAATG 1 cut(s) 480
BseAI TCCGGA 1 cut(s) 269
BseBI CCWGG 3 cut(s) 417, 480, 1157
BseCI ATCGAT 1 cut(s) 916
BseDI CCNNGG 4 cut(s) 380, 416, 582, 718
BseGI GGATG 2 cut(s) 266, 312
BseLI CCNNNNNNNGG 3 cut(s) 289, 417, 549
BseMI GCAATG 1 cut(s) 480
BseMII CTCAG 1 cut(s) 549
BseNI ACTGG 2 cut(s) 849, 1144
BseXI GCAGC 6 cut(s) 30, 223, 231, 762, 997, 1088
BshFI GGCC 2 cut(s) 457, 990
BshNI GGYRCC 1 cut(s) 38
BshTI ACCGGT 1 cut(s) 1098
BshVI ATCGAT 1 cut(s) 916
BsiHKCI CYCGRG 1 cut(s) 380
BsiSI CCGG 4 cut(s) 270, 381, 720, 1099
BslFI GGGAC 2 cut(s) 701, 974
BslI CCNNNNNNNGG 3 cut(s) 289, 417, 549
BsmAI GTCTC 1 cut(s) 351
BsmBI CGTCTC 1 cut(s) 351
BsmFI GGGAC 2 cut(s) 701, 974
BsnI GGCC 2 cut(s) 457, 990
BsoBI CYCGRG 1 cut(s) 380
Bsp13I TCCGGA 1 cut(s) 269
Bsp143I GATC 5 cut(s) 373, 552, 849, 913, 917
BspACI CCGC 1 cut(s) 290
BspANI GGCC 2 cut(s) 457, 990
BspCNI CTCAG 1 cut(s) 550
BspDI ATCGAT 1 cut(s) 916
BspEI TCCGGA 1 cut(s) 269
BspLI GGNNCC 5 cut(s) 40, 274, 456, 564, 717
BspPI GGATC 1 cut(s) 560
BspQI GCTCTTC 1 cut(s) 271
BspT107I GGYRCC 1 cut(s) 38
BsrDI GCAATG 1 cut(s) 480
BsrFI RCCGGY 1 cut(s) 1098
BsrI ACTGG 2 cut(s) 849, 1144
BssAI RCCGGY 1 cut(s) 1098
BssECI CCNNGG 4 cut(s) 380, 416, 582, 718
BssMI GATC 5 cut(s) 373, 552, 849, 913, 917
BssSI CACGAG 1 cut(s) 699
BssT1I CCWWGG 1 cut(s) 582
Bst2BI CACGAG 1 cut(s) 699
Bst2UI CCWGG 3 cut(s) 417, 480, 1157
Bst4CI ACNGT 5 cut(s) 239, 341, 400, 685, 986
Bst6I CTCTTC 2 cut(s) 233, 271
BstAPI GCANNNNNTGC 1 cut(s) 1010
BstC8I GCNNGC 4 cut(s) 202, 497, 631, 978
BstDEI CTNAG 1 cut(s) 558
BstF5I GGATG 2 cut(s) 266, 312
BstKTI GATC 5 cut(s) 376, 555, 852, 916, 920
BstMAI GTCTC 1 cut(s) 351
BstMBI GATC 5 cut(s) 373, 552, 849, 913, 917
BstMWI GCNNNNNNNGC 5 cut(s) 27, 36, 759, 1010, 1019
BstNI CCWGG 3 cut(s) 417, 480, 1157
BstNSI RCATGY 1 cut(s) 980
BstSCI CCNGG 6 cut(s) 379, 380, 415, 478, 718, 1155
BstV1I GCAGC 6 cut(s) 30, 223, 231, 762, 997, 1088
BstX2I RGATCY 2 cut(s) 552, 849
BstYI RGATCY 2 cut(s) 552, 849
Bsu15I ATCGAT 1 cut(s) 916
BsuRI GGCC 2 cut(s) 457, 990
BsuTUI ATCGAT 1 cut(s) 916
BtsCI GGATG 2 cut(s) 266, 312
BtsIMutI CAGTG 4 cut(s) 396, 690, 991, 1023
Cac8I GCNNGC 4 cut(s) 202, 497, 631, 978
Cfr10I RCCGGY 1 cut(s) 1098
Cfr13I GGNCC 5 cut(s) 272, 408, 455, 715, 733
Cfr9I CCCGGG 1 cut(s) 380
ClaI ATCGAT 1 cut(s) 916
CsiI ACCWGGT 1 cut(s) 1155
Csp6I GTAC 1 cut(s) 1147
CspAI ACCGGT 1 cut(s) 1098
CviAII CATG 6 cut(s) 112, 317, 459, 764, 977, 1126
CviQI GTAC 1 cut(s) 1147
DdeI CTNAG 1 cut(s) 558
DpnI GATC 5 cut(s) 375, 554, 851, 915, 919
DpnII GATC 5 cut(s) 373, 552, 849, 913, 917
DrdI GACNNNNNNGTC 1 cut(s) 713
DseDI GACNNNNNNGTC 1 cut(s) 713
Eam1104I CTCTTC 2 cut(s) 233, 271
EarI CTCTTC 2 cut(s) 233, 271
Eco130I CCWWGG 1 cut(s) 582
Eco32I GATATC 1 cut(s) 301
Eco47I GGWCC 4 cut(s) 272, 408, 715, 733
Eco88I CYCGRG 1 cut(s) 380
EcoO109I RGGNCCY 1 cut(s) 408
EcoRII CCWGG 3 cut(s) 415, 478, 1155
EcoRV GATATC 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 582
EcoT22I ATGCAT 1 cut(s) 620
ErhI CCWWGG 1 cut(s) 582
Esp3I CGTCTC 1 cut(s) 351
FaeI CATG 6 cut(s) 115, 320, 462, 767, 980, 1129
FalI AAGNNNNNCTT 2 cut(s) 1101, 1133
FaqI GGGAC 2 cut(s) 701, 974
FatI CATG 6 cut(s) 111, 316, 458, 763, 976, 1125
FauNDI CATATG 2 cut(s) 614, 637
Fnu4HI GCNGC 6 cut(s) 19, 212, 220, 751, 1011, 1077
FokI GGATG 2 cut(s) 273, 299
Fsp4HI GCNGC 6 cut(s) 19, 212, 220, 751, 1011, 1077
GluI GCNGC 6 cut(s) 19, 212, 220, 751, 1011, 1077
GsuI CTGGAG 1 cut(s) 866
HaeIII GGCC 2 cut(s) 457, 990
HapII CCGG 4 cut(s) 270, 381, 720, 1099
Hin1II CATG 6 cut(s) 115, 320, 462, 767, 980, 1129
HincII GTYRAC 1 cut(s) 1170
HindII GTYRAC 1 cut(s) 1170
HinfI GANTC 2 cut(s) 795, 962
HpaII CCGG 4 cut(s) 270, 381, 720, 1099
HphI GGTGA 3 cut(s) 193, 730, 1088
Hpy166II GTNNAC 2 cut(s) 529, 1170
Hpy188I TCNGA 5 cut(s) 235, 298, 559, 794, 1070
Hpy188III TCNNGA 3 cut(s) 270, 367, 699
Hpy8I GTNNAC 2 cut(s) 529, 1170
HpyAV CCTTC 5 cut(s) 334, 360, 373, 581, 829
HpyCH4III ACNGT 5 cut(s) 239, 341, 400, 685, 986
HpyCH4V TGCA 8 cut(s) 18, 143, 219, 473, 618, 777, 872, 931
HpyF10VI GCNNNNNNNGC 5 cut(s) 27, 36, 759, 1010, 1019
HpyF3I CTNAG 1 cut(s) 558
Hsp92II CATG 6 cut(s) 115, 320, 462, 767, 980, 1129
Kpn2I TCCGGA 1 cut(s) 269
Kzo9I GATC 5 cut(s) 373, 552, 849, 913, 917
LguI GCTCTTC 1 cut(s) 271
LmnI GCTCC 2 cut(s) 568, 661
Lsp1109I GCAGC 6 cut(s) 30, 223, 231, 762, 997, 1088
LweI GCATC 1 cut(s) 251
MabI ACCWGGT 1 cut(s) 1155
MaeIII GTNAC 1 cut(s) 696
MalI GATC 5 cut(s) 375, 554, 851, 915, 919
MboI GATC 5 cut(s) 373, 552, 849, 913, 917
MboII GAAGA 9 cut(s) 220, 258, 368, 452, 619, 844, 905, 1118, 1121
MflI RGATCY 2 cut(s) 552, 849
MluCI AATT 9 cut(s) 6, 45, 123, 449, 511, 535, 665, 1064, 1138
MlyI GAGTC 2 cut(s) 789, 956
MmeI TCCRAC 1 cut(s) 772
Mph1103I ATGCAT 1 cut(s) 620
MroI TCCGGA 1 cut(s) 269
MroXI GAANNNNTTC 1 cut(s) 389
MseI TTAA 4 cut(s) 48, 195, 599, 1152
MslI CAYNNNNRTG 3 cut(s) 114, 743, 1130
MspI CCGG 4 cut(s) 270, 381, 720, 1099
MspR9I CCNGG 6 cut(s) 381, 382, 417, 480, 720, 1157
MvaI CCWGG 3 cut(s) 417, 480, 1157
MwoI GCNNNNNNNGC 5 cut(s) 27, 36, 759, 1010, 1019
NciI CCSGG 3 cut(s) 381, 382, 720
NdeI CATATG 2 cut(s) 614, 637
NdeII GATC 5 cut(s) 373, 552, 849, 913, 917
NlaIII CATG 6 cut(s) 115, 320, 462, 767, 980, 1129
NlaIV GGNNCC 5 cut(s) 40, 274, 456, 564, 717
NmuCI GTSAC 1 cut(s) 696
NsiI ATGCAT 1 cut(s) 620
NspI RCATGY 1 cut(s) 980
PaeI GCATGC 1 cut(s) 980
PciSI GCTCTTC 1 cut(s) 271
PdmI GAANNNNTTC 1 cut(s) 389
PinAI ACCGGT 1 cut(s) 1098
PkrI GCNGC 6 cut(s) 20, 213, 221, 752, 1012, 1078
PleI GAGTC 2 cut(s) 789, 956
PpsI GAGTC 2 cut(s) 789, 956
PpuMI RGGWCCY 1 cut(s) 408
Psp5II RGGWCCY 1 cut(s) 408
Psp6I CCWGG 3 cut(s) 415, 478, 1155
PspGI CCWGG 3 cut(s) 415, 478, 1155
PspN4I GGNNCC 5 cut(s) 40, 274, 456, 564, 717
PspPI GGNCC 5 cut(s) 272, 408, 455, 715, 733
PspPPI RGGWCCY 1 cut(s) 408
PsuI RGATCY 2 cut(s) 552, 849
RsaI GTAC 1 cut(s) 1148
RsaNI GTAC 1 cut(s) 1147
RseI CAYNNNNRTG 3 cut(s) 114, 743, 1130
SapI GCTCTTC 1 cut(s) 271
SaqAI TTAA 4 cut(s) 48, 195, 599, 1152
SatI GCNGC 6 cut(s) 19, 212, 220, 751, 1011, 1077
Sau3AI GATC 5 cut(s) 373, 552, 849, 913, 917
Sau96I GGNCC 5 cut(s) 272, 408, 455, 715, 733
SchI GAGTC 2 cut(s) 789, 956
ScrFI CCNGG 6 cut(s) 381, 382, 417, 480, 720, 1157
SexAI ACCWGGT 1 cut(s) 1155
SfaNI GCATC 1 cut(s) 251
SinI GGWCC 4 cut(s) 272, 408, 715, 733
SmaI CCCGGG 1 cut(s) 382
SmiMI CAYNNNNRTG 3 cut(s) 114, 743, 1130
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
SphI GCATGC 1 cut(s) 980
Sse9I AATT 9 cut(s) 6, 45, 123, 449, 511, 535, 665, 1064, 1138
SsiI CCGC 1 cut(s) 290
StyD4I CCNGG 6 cut(s) 379, 380, 415, 478, 718, 1155
StyI CCWWGG 1 cut(s) 582
TaaI ACNGT 5 cut(s) 239, 341, 400, 685, 986
TaqI TCGA 3 cut(s) 176, 903, 916
TasI AATT 9 cut(s) 6, 45, 123, 449, 511, 535, 665, 1064, 1138
TatI WGTACW 1 cut(s) 1146
Tru1I TTAA 4 cut(s) 48, 195, 599, 1152
Tru9I TTAA 4 cut(s) 48, 195, 599, 1152
TscAI CASTG 4 cut(s) 403, 690, 991, 1030
TseFI GTSAC 1 cut(s) 696
TseI GCWGC 6 cut(s) 18, 211, 219, 750, 1010, 1076
Tsp45I GTSAC 1 cut(s) 696
TspDTI ATGAA 4 cut(s) 128, 454, 474, 780
TspGWI ACGGA 1 cut(s) 333
TspMI CCCGGG 1 cut(s) 380
TspRI CASTG 4 cut(s) 403, 690, 991, 1030
VpaK11BI GGWCC 4 cut(s) 272, 408, 715, 733
XceI RCATGY 1 cut(s) 980
XcmI CCANNNNNNNNNTGG 2 cut(s) 283, 777
XmaI CCCGGG 1 cut(s) 380
XmnI GAANNNNTTC 1 cut(s) 389
Zsp2I ATGCAT 1 cut(s) 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.