Prupe.8G092800_v2.0.a1

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000342
Physical Location & Seq
Reverse (-)
12551223 .. 12552891
1669 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G092800.1

Sequence Viewer

Length: 1101 bp
ATGAAGGTAGAGCAAGTCCTATACATGAATGGAGGAGTTGGGAAAACAAGCTATGCAAACAATTCCCTACTTCAAAGAGCAGTGATTTCAATGGTGAAGCCCATAGTTGGTGCAAGCATAGAGGAGCTGTGTTGCACTCTTTTCCCAGAGTGTTTGAAAGTAGCGGACTTGGGATGCTCTTCAGGACCCAACACCCTTTTGGTGGTATCAGATATCATTGACATCATCCACACAACTTACCAAAAACTCAACCGCCCACCTCCATCACTCCAAGCCTTCTTGAATGATCTTCCTGGAAATGATTTCAACACGGTCTTCAGGTCATTGCCAGGCTTCTATAAGAAACTTGATGAAGAACCTGAAAAGAAGCTTGGGCTATGTTTCATTGCGGGAATGCCTGGCTCTTTCTATGGCAGGCTCTTCCCCAACAATTCTCTCCACTTTGTTCACTCTTCTTATGCTCTCATGTGGATCTCTGAGGTTCCAAAAGGCTTGGTGACCAAAGAAGGAGTGGCACTTAACATGGGGAACATATATATAGCAAAGACAAGCCCTCCAACTGTGTTTAAGCAATACTTGGAGCAATTCAAAAGGGACTTCACAGTCTTTCTGAGGTCACGTGCCGAAGAGCTCGTTCCTGGGGGCAGTATGGTCCTCACAACCATGGGCAGCATAAAGAGTGACGATCCCCTTTGCATTTGGGAATTTGTAGGACTGAAACTCAATGACATGGTTTTAGAGGGTTTGATTGAAGAGGAAAAATTGGGCACTTTCAATATGCCATACTATGCACCTACAACCAAGGAGATCGAAGAGGTGATCGAGGCTGAAGGATCTTTTATTTTGCAAAACCTTGAAGTTTTCAAAAATGATTGGGACTCTTATGTCAAGCAAGCTAACAGTGGCCTTGATAAGAAGACAAGGGCTGCAATATTTGCCACTGACATAAGGGCTGTGGGAGAGCCGATTCTGGCGAGCCAATTTGGAGAAGCACCCATGGACGATTTGTTTCGTAGGTTTGAAGCAGATGTTCTTGATCACATGGAAAGGGAAAACTGCCAGTTCATTAACCTGGTTATCTCGTTGACAAAGAAGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

367

Amino Acids

40.99

Weight (kDa)

5.19

Isoelectric Point (pI)

47.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 602, 884
AciI CCGC 3 cut(s) 164, 253, 389
AclWI GGATC 3 cut(s) 479, 680, 841
AcsI RAATTY 1 cut(s) 704
AcuI CTGAAG 3 cut(s) 165, 301, 849
AcvI CACGTG 1 cut(s) 620
AfiI CCNNNNNNNGG 2 cut(s) 107, 202
AjnI CCWGG 5 cut(s) 292, 328, 397, 637, 1071
AjuI GAANNNNNNNTTGG 2 cut(s) 354, 386
AluBI AGCT 5 cut(s) 51, 127, 370, 631, 896
AluI AGCT 5 cut(s) 51, 127, 370, 631, 896
Alw21I GWGCWC 1 cut(s) 633
AlwI GGATC 3 cut(s) 479, 680, 841
AoxI GGCC 1 cut(s) 904
ApeKI GCWGC 2 cut(s) 669, 926
ApoI RAATTY 1 cut(s) 704
AspS9I GGNCC 2 cut(s) 185, 652
AsuHPI GGTGA 3 cut(s) 106, 508, 829
AvaII GGWCC 2 cut(s) 185, 652
BaeGI GKGCMC 1 cut(s) 770
BanII GRGCYC 1 cut(s) 633
BbrPI CACGTG 1 cut(s) 620
BbsI GAAGAC 2 cut(s) 307, 923
Bbv12I GWGCWC 1 cut(s) 633
BbvI GCAGC 2 cut(s) 681, 913
BccI CCATC 1 cut(s) 271
BciT130I CCWGG 5 cut(s) 294, 330, 399, 639, 1073
BclI TGATCA 1 cut(s) 1036
BisI GCNGC 2 cut(s) 670, 927
BlsI GCNGC 2 cut(s) 671, 928
Bme1390I CCNGG 5 cut(s) 294, 330, 399, 639, 1073
Bme18I GGWCC 2 cut(s) 185, 652
BmgT120I GGNCC 2 cut(s) 185, 652
BmiI GGNNCC 2 cut(s) 187, 483
BmrFI CCNGG 5 cut(s) 294, 330, 399, 639, 1073
BmsI GCATC 1 cut(s) 164
BpiI GAAGAC 2 cut(s) 307, 923
BsaAI YACGTR 1 cut(s) 620
BsaJI CCNNGG 4 cut(s) 638, 663, 801, 996
BsaXI ACNNNNNCTCC 2 cut(s) 538, 568
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 202
Bse1I ACTGG 1 cut(s) 1060
Bse3DI GCAATG 2 cut(s) 323, 384
BseBI CCWGG 5 cut(s) 294, 330, 399, 639, 1073
BseDI CCNNGG 4 cut(s) 638, 663, 801, 996
BseGI GGATG 2 cut(s) 179, 225
BseLI CCNNNNNNNGG 2 cut(s) 107, 202
BseMI GCAATG 2 cut(s) 323, 384
BseMII CTCAG 2 cut(s) 468, 602
BseNI ACTGG 1 cut(s) 1060
BseRI GAGGAG 2 cut(s) 48, 137
BseSI GKGCMC 1 cut(s) 770
BseXI GCAGC 2 cut(s) 681, 913
BshFI GGCC 1 cut(s) 906
BsiHKAI GWGCWC 1 cut(s) 633
BslFI GGGAC 2 cut(s) 608, 890
BslI CCNNNNNNNGG 2 cut(s) 107, 202
BsmFI GGGAC 2 cut(s) 608, 890
BsmI GAATGC 1 cut(s) 399
BsnI GGCC 1 cut(s) 906
Bsp1286I GDGCHC 2 cut(s) 633, 770
Bsp143I GATC 7 cut(s) 286, 471, 685, 807, 819, 833, 1036
Bsp19I CCATGG 2 cut(s) 663, 996
BspACI CCGC 3 cut(s) 164, 253, 389
BspANI GGCC 1 cut(s) 906
BspCNI CTCAG 2 cut(s) 469, 603
BspLI GGNNCC 2 cut(s) 187, 483
BspPI GGATC 3 cut(s) 479, 680, 841
BspQI GCTCTTC 3 cut(s) 184, 425, 621
BsrDI GCAATG 2 cut(s) 323, 384
BsrI ACTGG 1 cut(s) 1060
BssECI CCNNGG 4 cut(s) 638, 663, 801, 996
BssMI GATC 7 cut(s) 286, 471, 685, 807, 819, 833, 1036
BssT1I CCWWGG 3 cut(s) 663, 801, 996
Bst2UI CCWGG 5 cut(s) 294, 330, 399, 639, 1073
Bst4CI ACNGT 4 cut(s) 313, 562, 604, 902
Bst6I CTCTTC 6 cut(s) 184, 425, 457, 621, 747, 807
BstAPI GCANNNNNTGC 1 cut(s) 935
BstBAI YACGTR 1 cut(s) 620
BstC8I GCNNGC 4 cut(s) 115, 416, 894, 976
BstDEI CTNAG 2 cut(s) 477, 611
BstDSI CCRYGG 2 cut(s) 663, 996
BstEII GGTNACC 1 cut(s) 496
BstF5I GGATG 2 cut(s) 179, 225
BstKTI GATC 7 cut(s) 289, 474, 688, 810, 822, 836, 1039
BstMBI GATC 7 cut(s) 286, 471, 685, 807, 819, 833, 1036
BstMWI GCNNNNNNNGC 1 cut(s) 935
BstNI CCWGG 5 cut(s) 294, 330, 399, 639, 1073
BstPI GGTNACC 1 cut(s) 496
BstSCI CCNGG 5 cut(s) 292, 328, 397, 637, 1071
BstSLI GKGCMC 1 cut(s) 770
BstV1I GCAGC 2 cut(s) 681, 913
BstV2I GAAGAC 2 cut(s) 307, 923
BstX2I RGATCY 2 cut(s) 471, 833
BstYI RGATCY 2 cut(s) 471, 833
BsuRI GGCC 1 cut(s) 906
BtgI CCRYGG 2 cut(s) 663, 996
BtsCI GGATG 2 cut(s) 179, 225
BtsI GCAGTG 1 cut(s) 87
BtsIMutI CAGTG 3 cut(s) 87, 907, 939
Cac8I GCNNGC 4 cut(s) 115, 416, 894, 976
Cfr13I GGNCC 2 cut(s) 185, 652
CsiI ACCWGGT 1 cut(s) 1071
CviAII CATG 7 cut(s) 25, 466, 523, 664, 730, 997, 1042
DdeI CTNAG 2 cut(s) 477, 611
DpnI GATC 7 cut(s) 288, 473, 687, 809, 821, 835, 1038
DpnII GATC 7 cut(s) 286, 471, 685, 807, 819, 833, 1036
DrdI GACNNNNNNGTC 2 cut(s) 602, 884
DseDI GACNNNNNNGTC 2 cut(s) 602, 884
Eam1104I CTCTTC 6 cut(s) 184, 425, 457, 621, 747, 807
EarI CTCTTC 6 cut(s) 184, 425, 457, 621, 747, 807
Ecl136II GAGCTC 1 cut(s) 631
Eco130I CCWWGG 3 cut(s) 663, 801, 996
Eco24I GRGCYC 1 cut(s) 633
Eco32I GATATC 1 cut(s) 214
Eco47I GGWCC 2 cut(s) 185, 652
Eco53kI GAGCTC 1 cut(s) 631
Eco57I CTGAAG 3 cut(s) 165, 301, 849
Eco72I CACGTG 1 cut(s) 620
Eco91I GGTNACC 1 cut(s) 496
EcoICRI GAGCTC 1 cut(s) 631
EcoO109I RGGNCCY 1 cut(s) 185
EcoO65I GGTNACC 1 cut(s) 496
EcoRII CCWGG 5 cut(s) 292, 328, 397, 637, 1071
EcoRV GATATC 1 cut(s) 214
EcoT14I CCWWGG 3 cut(s) 663, 801, 996
EcoT38I GRGCYC 1 cut(s) 633
ErhI CCWWGG 3 cut(s) 663, 801, 996
FaeI CATG 7 cut(s) 28, 469, 526, 667, 733, 1000, 1045
FalI AAGNNNNNCTT 2 cut(s) 560, 592
FaqI GGGAC 2 cut(s) 608, 890
FatI CATG 7 cut(s) 24, 465, 522, 663, 729, 996, 1041
FauI CCCGC 1 cut(s) 382
FbaI TGATCA 1 cut(s) 1036
Fnu4HI GCNGC 2 cut(s) 670, 927
FokI GGATG 2 cut(s) 186, 212
FriOI GRGCYC 1 cut(s) 633
Fsp4HI GCNGC 2 cut(s) 670, 927
GluI GCNGC 2 cut(s) 670, 927
HaeIII GGCC 1 cut(s) 906
Hin1II CATG 7 cut(s) 28, 469, 526, 667, 733, 1000, 1045
HincII GTYRAC 1 cut(s) 1086
HindII GTYRAC 1 cut(s) 1086
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 2 cut(s) 878, 967
HphI GGTGA 3 cut(s) 106, 508, 829
Hpy166II GTNNAC 2 cut(s) 448, 1086
Hpy188I TCNGA 3 cut(s) 211, 478, 612
Hpy188III TCNNGA 3 cut(s) 183, 280, 1034
Hpy8I GTNNAC 2 cut(s) 448, 1086
HpyAV CCTTC 3 cut(s) 286, 500, 824
HpyCH4III ACNGT 4 cut(s) 313, 562, 604, 902
HpyCH4IV ACGT 1 cut(s) 619
HpyCH4V TGCA 7 cut(s) 56, 113, 135, 696, 791, 847, 929
HpyF10VI GCNNNNNNNGC 1 cut(s) 935
HpyF3I CTNAG 2 cut(s) 477, 611
HpySE526I ACGT 1 cut(s) 619
Hsp92II CATG 7 cut(s) 28, 469, 526, 667, 733, 1000, 1045
Ksp22I TGATCA 1 cut(s) 1036
Kzo9I GATC 7 cut(s) 286, 471, 685, 807, 819, 833, 1036
LguI GCTCTTC 3 cut(s) 184, 425, 621
LmnI GCTCC 2 cut(s) 124, 580
Lsp1109I GCAGC 2 cut(s) 681, 913
LweI GCATC 1 cut(s) 164
MabI ACCWGGT 1 cut(s) 1071
MaeII ACGT 1 cut(s) 619
MaeIII GTNAC 3 cut(s) 496, 615, 680
MalI GATC 7 cut(s) 288, 473, 687, 809, 821, 835, 1038
MboI GATC 7 cut(s) 286, 471, 685, 807, 819, 833, 1036
MflI RGATCY 2 cut(s) 471, 833
MhlI GDGCHC 2 cut(s) 633, 770
MluCI AATT 6 cut(s) 61, 430, 584, 704, 761, 980
MlyI GAGTC 1 cut(s) 872
MmeI TCCRAC 1 cut(s) 581
MseI TTAA 3 cut(s) 519, 567, 1068
MslI CAYNNNNRTG 1 cut(s) 662
MspR9I CCNGG 5 cut(s) 294, 330, 399, 639, 1073
Mva1269I GAATGC 1 cut(s) 399
MvaI CCWGG 5 cut(s) 294, 330, 399, 639, 1073
MwoI GCNNNNNNNGC 1 cut(s) 935
NcoI CCATGG 2 cut(s) 663, 996
NdeII GATC 7 cut(s) 286, 471, 685, 807, 819, 833, 1036
NlaIII CATG 7 cut(s) 28, 469, 526, 667, 733, 1000, 1045
NlaIV GGNNCC 2 cut(s) 187, 483
NmuCI GTSAC 3 cut(s) 496, 615, 680
PciSI GCTCTTC 3 cut(s) 184, 425, 621
PctI GAATGC 1 cut(s) 399
PfeI GAWTC 1 cut(s) 967
PfoI TCCNGGA 1 cut(s) 292
PkrI GCNGC 2 cut(s) 671, 928
PleI GAGTC 1 cut(s) 872
PmaCI CACGTG 1 cut(s) 620
PmlI CACGTG 1 cut(s) 620
PpsI GAGTC 1 cut(s) 872
Ppu21I YACGTR 1 cut(s) 620
PpuMI RGGWCCY 1 cut(s) 185
Psp124BI GAGCTC 1 cut(s) 633
Psp5II RGGWCCY 1 cut(s) 185
Psp6I CCWGG 5 cut(s) 292, 328, 397, 637, 1071
PspCI CACGTG 1 cut(s) 620
PspEI GGTNACC 1 cut(s) 496
PspGI CCWGG 5 cut(s) 292, 328, 397, 637, 1071
PspN4I GGNNCC 2 cut(s) 187, 483
PspPI GGNCC 2 cut(s) 185, 652
PspPPI RGGWCCY 1 cut(s) 185
PsuI RGATCY 2 cut(s) 471, 833
RseI CAYNNNNRTG 1 cut(s) 662
SacI GAGCTC 1 cut(s) 633
SapI GCTCTTC 3 cut(s) 184, 425, 621
SaqAI TTAA 3 cut(s) 519, 567, 1068
SatI GCNGC 2 cut(s) 670, 927
Sau3AI GATC 7 cut(s) 286, 471, 685, 807, 819, 833, 1036
Sau96I GGNCC 2 cut(s) 185, 652
SchI GAGTC 1 cut(s) 872
ScrFI CCNGG 5 cut(s) 294, 330, 399, 639, 1073
SduI GDGCHC 2 cut(s) 633, 770
SexAI ACCWGGT 1 cut(s) 1071
SfaNI GCATC 1 cut(s) 164
SinI GGWCC 2 cut(s) 185, 652
SmiMI CAYNNNNRTG 1 cut(s) 662
Sse9I AATT 6 cut(s) 61, 430, 584, 704, 761, 980
SsiI CCGC 3 cut(s) 164, 253, 389
SspI AATATT 1 cut(s) 933
SstI GAGCTC 1 cut(s) 633
StyD4I CCNGG 5 cut(s) 292, 328, 397, 637, 1071
StyI CCWWGG 3 cut(s) 663, 801, 996
TaaI ACNGT 4 cut(s) 313, 562, 604, 902
TaiI ACGT 1 cut(s) 622
TaqI TCGA 2 cut(s) 810, 822
TasI AATT 6 cut(s) 61, 430, 584, 704, 761, 980
TfiI GAWTC 1 cut(s) 967
Tru1I TTAA 3 cut(s) 519, 567, 1068
Tru9I TTAA 3 cut(s) 519, 567, 1068
TscAI CASTG 3 cut(s) 87, 907, 946
TseFI GTSAC 3 cut(s) 496, 615, 680
TseI GCWGC 2 cut(s) 669, 926
Tsp45I GTSAC 3 cut(s) 496, 615, 680
TspDTI ATGAA 5 cut(s) 17, 41, 366, 373, 1054
TspRI CASTG 3 cut(s) 87, 907, 946
VpaK11BI GGWCC 2 cut(s) 185, 652
XapI RAATTY 1 cut(s) 704
XcmI CCANNNNNNNNNTGG 2 cut(s) 196, 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.