Prupe.8G093500_v2.0.a1

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000342
Physical Location & Seq
Reverse (-)
12630489 .. 12631589
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G093500.2

Sequence Viewer

Length: 561 bp
ATGGAGGTAGAGCAAGTTCTACACATGAATGGAGGAGTTGGGAAAACAAGCTATGCAAACAATTCCCTACTTCAAAGAGCAGTGATTTCAACGGTGAAGCCTATAGTTGATGCAAGCATAGAGGAGCTGTGTTGCACTCTCTTCCCAGAGTGTTTGAAAATAGCGGACTTGGGATGCTCTTCAGGACCCAACACCCTTTTGGTGGTATCAGATATCATAGACAACATCCGCAACACTTTCCAAAAGCTCAACCGCCCACCTCCATCACTCCAAGCCTTCTTGAATGATCTTCCCCGAAACGATTTCAACACGGTGTTCAGGTCATTGCCAGGCTTCTATAAGAAACTTGATGAAGAACCTGAAAAGAAGCTTGGGCCATGTTTCATTGCAGGAATGCCTGGCTCTTTCTATGGCAGGCTCTTCCCCGACAATTCTCTCCACTTTGTTCACTCTTCTTATGCTCTCATGTGGATCTCTGAGGTTCCAAAAGGCTTGGTGACGAAAGAAGGAGAGGCACTTAACAAGGGGAACATATATATAAATAGGATGAGAAATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

187

Amino Acids

20.77

Weight (kDa)

6.82

Isoelectric Point (pI)

47.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 164, 229, 253
AclWI GGATC 1 cut(s) 479
AcuI CTGAAG 1 cut(s) 165
AfiI CCNNNNNNNGG 1 cut(s) 202
AgsI TTSAA 5 cut(s) 74, 90, 157, 283, 307
AjnI CCWGG 2 cut(s) 328, 397
AjuI GAANNNNNNNTTGG 2 cut(s) 354, 386
AluBI AGCT 4 cut(s) 51, 127, 247, 370
AluI AGCT 4 cut(s) 51, 127, 247, 370
AlwI GGATC 1 cut(s) 479
AoxI GGCC 1 cut(s) 374
AspS9I GGNCC 2 cut(s) 185, 374
AsuHPI GGTGA 2 cut(s) 106, 508
AvaII GGWCC 1 cut(s) 185
BccI CCATC 1 cut(s) 271
BciT130I CCWGG 2 cut(s) 330, 399
BfmI CTRYAG 1 cut(s) 102
Bme1390I CCNGG 2 cut(s) 330, 399
Bme18I GGWCC 1 cut(s) 185
BmgT120I GGNCC 2 cut(s) 185, 374
BmiI GGNNCC 2 cut(s) 187, 483
BmrFI CCNGG 2 cut(s) 330, 399
BmsI GCATC 2 cut(s) 100, 164
Bsc4I CCNNNNNNNGG 1 cut(s) 202
Bse3DI GCAATG 2 cut(s) 323, 384
BseBI CCWGG 2 cut(s) 330, 399
BseGI GGATG 3 cut(s) 179, 225, 552
BseLI CCNNNNNNNGG 1 cut(s) 202
BseMI GCAATG 2 cut(s) 323, 384
BseMII CTCAG 1 cut(s) 468
BseRI GAGGAG 2 cut(s) 48, 137
BshFI GGCC 1 cut(s) 376
BslI CCNNNNNNNGG 1 cut(s) 202
BsmI GAATGC 1 cut(s) 399
BsnI GGCC 1 cut(s) 376
Bsp143I GATC 2 cut(s) 286, 471
BspACI CCGC 3 cut(s) 164, 229, 253
BspANI GGCC 1 cut(s) 376
BspCNI CTCAG 1 cut(s) 469
BspLI GGNNCC 2 cut(s) 187, 483
BspPI GGATC 1 cut(s) 479
BspQI GCTCTTC 2 cut(s) 184, 425
BsrDI GCAATG 2 cut(s) 323, 384
BssMI GATC 2 cut(s) 286, 471
Bst2UI CCWGG 2 cut(s) 330, 399
Bst4CI ACNGT 2 cut(s) 94, 313
Bst6I CTCTTC 4 cut(s) 146, 184, 425, 457
BstC8I GCNNGC 2 cut(s) 115, 416
BstDEI CTNAG 1 cut(s) 477
BstF5I GGATG 3 cut(s) 179, 225, 552
BstKTI GATC 2 cut(s) 289, 474
BstMBI GATC 2 cut(s) 286, 471
BstNI CCWGG 2 cut(s) 330, 399
BstSCI CCNGG 2 cut(s) 328, 397
BstSFI CTRYAG 1 cut(s) 102
BstX2I RGATCY 1 cut(s) 471
BstYI RGATCY 1 cut(s) 471
BsuRI GGCC 1 cut(s) 376
BtsCI GGATG 3 cut(s) 179, 225, 552
BtsI GCAGTG 1 cut(s) 87
BtsIMutI CAGTG 1 cut(s) 87
Cac8I GCNNGC 2 cut(s) 115, 416
Cfr13I GGNCC 2 cut(s) 185, 374
CviAII CATG 3 cut(s) 25, 378, 466
DdeI CTNAG 1 cut(s) 477
DpnI GATC 2 cut(s) 288, 473
DpnII GATC 2 cut(s) 286, 471
Eam1104I CTCTTC 4 cut(s) 146, 184, 425, 457
EarI CTCTTC 4 cut(s) 146, 184, 425, 457
Eco32I GATATC 1 cut(s) 214
Eco47I GGWCC 1 cut(s) 185
Eco57I CTGAAG 1 cut(s) 165
EcoO109I RGGNCCY 1 cut(s) 185
EcoRII CCWGG 2 cut(s) 328, 397
EcoRV GATATC 1 cut(s) 214
FaeI CATG 3 cut(s) 28, 381, 469
FatI CATG 3 cut(s) 24, 377, 465
FokI GGATG 2 cut(s) 186, 212
HaeIII GGCC 1 cut(s) 376
Hin1II CATG 3 cut(s) 28, 381, 469
HindIII AAGCTT 1 cut(s) 368
HphI GGTGA 2 cut(s) 106, 508
Hpy166II GTNNAC 1 cut(s) 448
Hpy188I TCNGA 2 cut(s) 211, 478
Hpy188III TCNNGA 2 cut(s) 183, 280
Hpy8I GTNNAC 1 cut(s) 448
HpyAV CCTTC 2 cut(s) 286, 500
HpyCH4III ACNGT 2 cut(s) 94, 313
HpyCH4V TGCA 4 cut(s) 56, 113, 135, 389
HpyF3I CTNAG 1 cut(s) 477
Hsp92II CATG 3 cut(s) 28, 381, 469
Kzo9I GATC 2 cut(s) 286, 471
LguI GCTCTTC 2 cut(s) 184, 425
LmnI GCTCC 1 cut(s) 124
LweI GCATC 2 cut(s) 100, 164
MaeIII GTNAC 1 cut(s) 496
MalI GATC 2 cut(s) 288, 473
MboI GATC 2 cut(s) 286, 471
MboII GAAGA 6 cut(s) 133, 171, 281, 365, 412, 444
MflI RGATCY 1 cut(s) 471
MluCI AATT 3 cut(s) 61, 430, 553
MnlI CCTC 5 cut(s) 26, 115, 270, 472, 505
MseI TTAA 1 cut(s) 519
MslI CAYNNNNRTG 1 cut(s) 27
MspR9I CCNGG 2 cut(s) 330, 399
Mva1269I GAATGC 1 cut(s) 399
MvaI CCWGG 2 cut(s) 330, 399
NdeII GATC 2 cut(s) 286, 471
NlaIII CATG 3 cut(s) 28, 381, 469
NlaIV GGNNCC 2 cut(s) 187, 483
NmuCI GTSAC 1 cut(s) 496
PciSI GCTCTTC 2 cut(s) 184, 425
PctI GAATGC 1 cut(s) 399
PpuMI RGGWCCY 1 cut(s) 185
Psp5II RGGWCCY 1 cut(s) 185
Psp6I CCWGG 2 cut(s) 328, 397
PspGI CCWGG 2 cut(s) 328, 397
PspN4I GGNNCC 2 cut(s) 187, 483
PspPI GGNCC 2 cut(s) 185, 374
PspPPI RGGWCCY 1 cut(s) 185
PsrI GAACNNNNNNTAC 1 cut(s) 32
PsuI RGATCY 1 cut(s) 471
RseI CAYNNNNRTG 1 cut(s) 27
SapI GCTCTTC 2 cut(s) 184, 425
SaqAI TTAA 1 cut(s) 519
Sau3AI GATC 2 cut(s) 286, 471
Sau96I GGNCC 2 cut(s) 185, 374
ScrFI CCNGG 2 cut(s) 330, 399
SetI ASST 9 cut(s) 9, 53, 129, 249, 262, 323, 361, 372, 483
SfaNI GCATC 2 cut(s) 100, 164
SfcI CTRYAG 1 cut(s) 102
SinI GGWCC 1 cut(s) 185
SmiMI CAYNNNNRTG 1 cut(s) 27
Sse9I AATT 3 cut(s) 61, 430, 553
SsiI CCGC 3 cut(s) 164, 229, 253
StyD4I CCNGG 2 cut(s) 328, 397
TaaI ACNGT 2 cut(s) 94, 313
TasI AATT 3 cut(s) 61, 430, 553
Tru1I TTAA 1 cut(s) 519
Tru9I TTAA 1 cut(s) 519
TscAI CASTG 1 cut(s) 87
TseFI GTSAC 1 cut(s) 496
Tsp45I GTSAC 1 cut(s) 496
TspDTI ATGAA 3 cut(s) 41, 366, 373
TspRI CASTG 1 cut(s) 87
VpaK11BI GGWCC 1 cut(s) 185
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.