pycom10g05660

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000342
Physical Location & Seq
Reverse (-)
6097048 .. 6098826
1779 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g05660.5

Sequence Viewer

Length: 969 bp
ATGTGTGATGACATAATTGATATATGCAGCTCTTATAGCAGGATTAAGAGTGTAGAGAAGCATTATTTGAGAACACAAACTAAAATGGAGGTAGAGCAAGTGCTTCACATGAATGGAGGAATTGGGAAAACAAGCTATGCAACCAACTCTCTACTTCAAAGAGCTGTGATTTCGATGGCGAAGCCCATAGTTAAGGCAAGCATAGAGCAGCTTTGCGGCACACTCTTCTCTGACTGTTTGAAAATAGCAGACTTGGGATGCTCTTCCGGACCCAACACCCTGTTGGCAGTGTCAGATATCATACACAACATCCATGCCACTTTCCAAAAACTGAGCCGTCCATCCCCTTCACTCCAAGCCTTCTTGAATGATCTTCCCTGGAACGATTTCAACACTGTGTTCAGGTCATTGCCAGGGTTCTACAAGAAACTTGAGGAAGAACAGAAGTTGGGGCCATGTTTCATTACTGCAATGCCTGGTTCTTTCTATGGCAGGCTCTTTCCAAACAATTCTCTCCACTTTGTTCACTCTAATTATGCCCTTATGTGGATCTATGAGGCTCCAAAAGGTTTGATTACCAAGGAAGGAGAGGGATTAAACAAGAAGAACATATGTATAGCAAAAACAAGCCCATATGCTGTGTATAAGTTGTATTTGGAGCAATTCAGAAAGGACTTCACAGTGTTTTTGAGGTCACGAGCAGAAGAGGTGGTCCCCGGAGGAAGTATGGTCCTCACCACAATGGGCAGCATAAAGAGCCATGACCCACTTTGCATTTGGGAAGTCGTCGGACTCAAACTCAATGATATGGTTTTAGAGGGTTTGATTGAGAAGGAAAAACTGGAGATCTTCAATCTGCCATATTATGCACCAACAACAAAGGAGGTTGAAGATGTAATCGCGGCTACGAAGGATCTTTTACTTTGCAAAGCCTCGAAGTTTTCAAAAATGATTGGGACTCTTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

323

Amino Acids

36.1

Weight (kDa)

8.26

Isoelectric Point (pI)

45.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 902
AccIII TCCGGA 1 cut(s) 266
AciI CCGC 2 cut(s) 216, 902
AclWI GGATC 2 cut(s) 557, 921
AfiI CCNNNNNNNGG 1 cut(s) 546
AgsI TTSAA 7 cut(s) 158, 241, 367, 391, 853, 890, 945
AjnI CCWGG 3 cut(s) 377, 412, 475
AluBI AGCT 4 cut(s) 30, 135, 164, 211
AluI AGCT 4 cut(s) 30, 135, 164, 211
AlwI GGATC 2 cut(s) 557, 921
Aor13HI TCCGGA 1 cut(s) 266
AoxI GGCC 1 cut(s) 452
ApeKI GCWGC 3 cut(s) 27, 208, 747
Asp700I GAANNNNTTC 1 cut(s) 386
AspS9I GGNCC 4 cut(s) 269, 452, 712, 730
AsuC2I CCSGG 1 cut(s) 717
AsuHPI GGTGA 1 cut(s) 727
AvaII GGWCC 3 cut(s) 269, 712, 730
BauI CACGAG 1 cut(s) 696
BbvI GCAGC 3 cut(s) 39, 220, 759
BccI CCATC 2 cut(s) 169, 349
BceAI ACGGC 1 cut(s) 321
BciT130I CCWGG 3 cut(s) 379, 414, 477
BcnI CCSGG 1 cut(s) 717
BglII AGATCT 1 cut(s) 846
BisI GCNGC 5 cut(s) 28, 209, 217, 748, 903
BlsI GCNGC 5 cut(s) 29, 210, 218, 749, 904
Bme1390I CCNGG 4 cut(s) 379, 414, 477, 717
Bme18I GGWCC 3 cut(s) 269, 712, 730
BmgT120I GGNCC 4 cut(s) 269, 452, 712, 730
BmiI GGNNCC 4 cut(s) 271, 453, 561, 714
BmrFI CCNGG 4 cut(s) 379, 414, 477, 717
BmsI GCATC 1 cut(s) 248
BpmI CTGGAG 1 cut(s) 863
BpuEI CTTGAG 1 cut(s) 452
BpuMI CCSGG 1 cut(s) 717
BsaJI CCNNGG 4 cut(s) 377, 413, 579, 715
BsaWI WCCGGW 1 cut(s) 266
Bsc4I CCNNNNNNNGG 1 cut(s) 546
Bse1I ACTGG 1 cut(s) 846
Bse3DI GCAATG 2 cut(s) 407, 477
BseAI TCCGGA 1 cut(s) 266
BseBI CCWGG 3 cut(s) 379, 414, 477
BseDI CCNNGG 4 cut(s) 377, 413, 579, 715
BseGI GGATG 3 cut(s) 263, 309, 341
BseLI CCNNNNNNNGG 1 cut(s) 546
BseMI GCAATG 2 cut(s) 407, 477
BseMII CTCAG 1 cut(s) 323
BseNI ACTGG 1 cut(s) 846
BseXI GCAGC 3 cut(s) 39, 220, 759
Bsh1236I CGCG 1 cut(s) 902
BshFI GGCC 1 cut(s) 454
BsiSI CCGG 2 cut(s) 267, 717
BslFI GGGAC 1 cut(s) 698
BslI CCNNNNNNNGG 1 cut(s) 546
BsmFI GGGAC 1 cut(s) 698
BsnI GGCC 1 cut(s) 454
Bsp13I TCCGGA 1 cut(s) 266
Bsp143I GATC 4 cut(s) 370, 549, 846, 913
BspACI CCGC 2 cut(s) 216, 902
BspANI GGCC 1 cut(s) 454
BspCNI CTCAG 1 cut(s) 324
BspEI TCCGGA 1 cut(s) 266
BspFNI CGCG 1 cut(s) 902
BspLI GGNNCC 4 cut(s) 271, 453, 561, 714
BspPI GGATC 2 cut(s) 557, 921
BspQI GCTCTTC 1 cut(s) 268
BsrDI GCAATG 2 cut(s) 407, 477
BsrI ACTGG 1 cut(s) 846
BssECI CCNNGG 4 cut(s) 377, 413, 579, 715
BssMI GATC 4 cut(s) 370, 549, 846, 913
BssSI CACGAG 1 cut(s) 696
BssT1I CCWWGG 1 cut(s) 579
Bst2BI CACGAG 1 cut(s) 696
Bst2UI CCWGG 3 cut(s) 379, 414, 477
Bst4CI ACNGT 3 cut(s) 236, 397, 682
Bst6I CTCTTC 3 cut(s) 230, 268, 699
BstC8I GCNNGC 2 cut(s) 199, 494
BstDEI CTNAG 1 cut(s) 332
BstF5I GGATG 3 cut(s) 263, 309, 341
BstFNI CGCG 1 cut(s) 902
BstKTI GATC 4 cut(s) 373, 552, 849, 916
BstMBI GATC 4 cut(s) 370, 549, 846, 913
BstMWI GCNNNNNNNGC 2 cut(s) 36, 756
BstNI CCWGG 3 cut(s) 379, 414, 477
BstSCI CCNGG 4 cut(s) 377, 412, 475, 715
BstUI CGCG 1 cut(s) 902
BstV1I GCAGC 3 cut(s) 39, 220, 759
BstX2I RGATCY 3 cut(s) 549, 846, 913
BstYI RGATCY 3 cut(s) 549, 846, 913
BsuRI GGCC 1 cut(s) 454
BtsCI GGATG 3 cut(s) 263, 309, 341
BtsI GCAGTG 1 cut(s) 294
BtsIMutI CAGTG 3 cut(s) 294, 393, 687
Cac8I GCNNGC 2 cut(s) 199, 494
Cfr13I GGNCC 4 cut(s) 269, 452, 712, 730
CviAII CATG 4 cut(s) 109, 314, 456, 761
DdeI CTNAG 1 cut(s) 332
DpnI GATC 4 cut(s) 372, 551, 848, 915
DpnII GATC 4 cut(s) 370, 549, 846, 913
Eam1104I CTCTTC 3 cut(s) 230, 268, 699
EarI CTCTTC 3 cut(s) 230, 268, 699
Eco130I CCWWGG 1 cut(s) 579
Eco32I GATATC 1 cut(s) 298
Eco47I GGWCC 3 cut(s) 269, 712, 730
EcoRII CCWGG 3 cut(s) 377, 412, 475
EcoRV GATATC 1 cut(s) 298
EcoT14I CCWWGG 1 cut(s) 579
ErhI CCWWGG 1 cut(s) 579
FaeI CATG 4 cut(s) 112, 317, 459, 764
FaqI GGGAC 1 cut(s) 698
FatI CATG 4 cut(s) 108, 313, 455, 760
FauNDI CATATG 2 cut(s) 611, 634
Fnu4HI GCNGC 5 cut(s) 28, 209, 217, 748, 903
FokI GGATG 3 cut(s) 270, 296, 328
Fsp4HI GCNGC 5 cut(s) 28, 209, 217, 748, 903
GluI GCNGC 5 cut(s) 28, 209, 217, 748, 903
GsuI CTGGAG 1 cut(s) 863
HaeIII GGCC 1 cut(s) 454
HapII CCGG 2 cut(s) 267, 717
Hin1II CATG 4 cut(s) 112, 317, 459, 764
HinfI GANTC 2 cut(s) 792, 958
HpaII CCGG 2 cut(s) 267, 717
HphI GGTGA 1 cut(s) 727
Hpy166II GTNNAC 1 cut(s) 526
Hpy188I TCNGA 4 cut(s) 232, 295, 668, 791
Hpy188III TCNNGA 3 cut(s) 267, 364, 696
Hpy8I GTNNAC 1 cut(s) 526
Hpy99I CGWCG 1 cut(s) 791
HpyAV CCTTC 5 cut(s) 357, 370, 578, 826, 904
HpyCH4III ACNGT 3 cut(s) 236, 397, 682
HpyCH4V TGCA 6 cut(s) 27, 140, 470, 774, 869, 927
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 756
HpyF3I CTNAG 1 cut(s) 332
Hsp92II CATG 4 cut(s) 112, 317, 459, 764
Kpn2I TCCGGA 1 cut(s) 266
Kzo9I GATC 4 cut(s) 370, 549, 846, 913
LguI GCTCTTC 1 cut(s) 268
LmnI GCTCC 2 cut(s) 565, 658
Lsp1109I GCAGC 3 cut(s) 39, 220, 759
LweI GCATC 1 cut(s) 248
MaeIII GTNAC 1 cut(s) 693
MalI GATC 4 cut(s) 372, 551, 848, 915
MboI GATC 4 cut(s) 370, 549, 846, 913
MboII GAAGA 8 cut(s) 217, 255, 365, 449, 616, 716, 841, 902
MflI RGATCY 3 cut(s) 549, 846, 913
MluCI AATT 5 cut(s) 15, 120, 508, 532, 662
MlyI GAGTC 2 cut(s) 786, 952
MmeI TCCRAC 1 cut(s) 769
MroI TCCGGA 1 cut(s) 266
MroXI GAANNNNTTC 1 cut(s) 386
MseI TTAA 3 cut(s) 45, 192, 596
MslI CAYNNNNRTG 2 cut(s) 111, 740
MspI CCGG 2 cut(s) 267, 717
MspR9I CCNGG 4 cut(s) 379, 414, 477, 717
MvaI CCWGG 3 cut(s) 379, 414, 477
MvnI CGCG 1 cut(s) 902
MwoI GCNNNNNNNGC 2 cut(s) 36, 756
NciI CCSGG 1 cut(s) 717
NdeI CATATG 2 cut(s) 611, 634
NdeII GATC 4 cut(s) 370, 549, 846, 913
NlaIII CATG 4 cut(s) 112, 317, 459, 764
NlaIV GGNNCC 4 cut(s) 271, 453, 561, 714
NmuCI GTSAC 1 cut(s) 693
PciSI GCTCTTC 1 cut(s) 268
PdmI GAANNNNTTC 1 cut(s) 386
PkrI GCNGC 5 cut(s) 29, 210, 218, 749, 904
PleI GAGTC 2 cut(s) 786, 952
PpsI GAGTC 2 cut(s) 786, 952
Psp6I CCWGG 3 cut(s) 377, 412, 475
PspGI CCWGG 3 cut(s) 377, 412, 475
PspN4I GGNNCC 4 cut(s) 271, 453, 561, 714
PspPI GGNCC 4 cut(s) 269, 452, 712, 730
PsuI RGATCY 3 cut(s) 549, 846, 913
RseI CAYNNNNRTG 2 cut(s) 111, 740
SapI GCTCTTC 1 cut(s) 268
SaqAI TTAA 3 cut(s) 45, 192, 596
SatI GCNGC 5 cut(s) 28, 209, 217, 748, 903
Sau3AI GATC 4 cut(s) 370, 549, 846, 913
Sau96I GGNCC 4 cut(s) 269, 452, 712, 730
SchI GAGTC 2 cut(s) 786, 952
ScrFI CCNGG 4 cut(s) 379, 414, 477, 717
SfaNI GCATC 1 cut(s) 248
SinI GGWCC 3 cut(s) 269, 712, 730
SmiMI CAYNNNNRTG 2 cut(s) 111, 740
SmlI CTYRAG 1 cut(s) 431
SmoI CTYRAG 1 cut(s) 431
Sse9I AATT 5 cut(s) 15, 120, 508, 532, 662
SsiI CCGC 2 cut(s) 216, 902
StyD4I CCNGG 4 cut(s) 377, 412, 475, 715
StyI CCWWGG 1 cut(s) 579
TaaI ACNGT 3 cut(s) 236, 397, 682
TaqI TCGA 2 cut(s) 173, 935
TasI AATT 5 cut(s) 15, 120, 508, 532, 662
TauI GCSGC 2 cut(s) 219, 905
Tru1I TTAA 3 cut(s) 45, 192, 596
Tru9I TTAA 3 cut(s) 45, 192, 596
TscAI CASTG 3 cut(s) 294, 400, 687
TseFI GTSAC 1 cut(s) 693
TseI GCWGC 3 cut(s) 27, 208, 747
Tsp45I GTSAC 1 cut(s) 693
TspDTI ATGAA 2 cut(s) 125, 451
TspRI CASTG 3 cut(s) 294, 400, 687
VpaK11BI GGWCC 3 cut(s) 269, 712, 730
XcmI CCANNNNNNNNNTGG 2 cut(s) 280, 774
XmnI GAANNNNTTC 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.