Rmu_sc0001803.1_g000020

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001803.1
OG0000342
Physical Location & Seq
Forward (+)
60374 .. 60730
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001803.1_g000020.1.cds

Sequence Viewer

Length: 357 bp
atgccatactatgcgtcaacagcggatgaggtgaaagaggtgattgaggctgaaggttcttttattttacaaaacctcgaaacttttagaaatgactgggactgttacataaaacaagttaactgtggctttgacaagaaagtgagggcagcaataatatccattgacataagagctgtgggagagcctattctctggccagcggattcagagaaaaagccatggatgatttgttttgcaggtttgaagaagatgttcttgatcacatggacaaggataactgccagttcattgacctggttatctcgtttgttggaaattttggagatggatgatgctttgagtaagaacttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

118

Amino Acids

13.58

Weight (kDa)

4.97

Isoelectric Point (pI)

40.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 230
AciI CCGC 2 cut(s) 23, 203
AcoI YGGCCR 1 cut(s) 197
AcsI RAATTY 1 cut(s) 318
AcuI CTGAAG 1 cut(s) 72
AgsI TTSAA 1 cut(s) 247
AjnI CCWGG 1 cut(s) 296
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
AoxI GGCC 1 cut(s) 197
ApeKI GCWGC 1 cut(s) 149
ApoI RAATTY 1 cut(s) 318
Asp700I GAANNNNTTC 1 cut(s) 254
AsuHPI GGTGA 2 cut(s) 43, 52
BalI TGGCCA 1 cut(s) 199
BbvI GCAGC 1 cut(s) 161
BccI CCATC 1 cut(s) 322
BciT130I CCWGG 1 cut(s) 298
BclI TGATCA 1 cut(s) 261
BfuAI ACCTGC 1 cut(s) 230
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
Bme1390I CCNGG 1 cut(s) 298
BmrFI CCNGG 1 cut(s) 298
BmrI ACTGGG 1 cut(s) 106
BmsI GCATC 1 cut(s) 325
BmuI ACTGGG 1 cut(s) 106
BsaJI CCNNGG 1 cut(s) 221
Bse1I ACTGG 2 cut(s) 101, 285
BseBI CCWGG 1 cut(s) 298
BseDI CCNNGG 1 cut(s) 221
BseGI GGATG 3 cut(s) 31, 231, 337
BseNI ACTGG 2 cut(s) 101, 285
BseXI GCAGC 1 cut(s) 161
BshFI GGCC 1 cut(s) 199
BslFI GGGAC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 113
BsnI GGCC 1 cut(s) 199
Bsp143I GATC 1 cut(s) 261
Bsp19I CCATGG 1 cut(s) 221
BspACI CCGC 2 cut(s) 23, 203
BspANI GGCC 1 cut(s) 199
BspMI ACCTGC 1 cut(s) 230
BsrI ACTGG 2 cut(s) 101, 285
BssECI CCNNGG 1 cut(s) 221
BssMI GATC 1 cut(s) 261
BssT1I CCWWGG 1 cut(s) 221
Bst2UI CCWGG 1 cut(s) 298
Bst4CI ACNGT 2 cut(s) 104, 125
BstC8I GCNNGC 1 cut(s) 201
BstDSI CCRYGG 1 cut(s) 221
BstF5I GGATG 3 cut(s) 31, 231, 337
BstKTI GATC 1 cut(s) 264
BstMBI GATC 1 cut(s) 261
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstNI CCWGG 1 cut(s) 298
BstSCI CCNGG 1 cut(s) 296
BstV1I GCAGC 1 cut(s) 161
BsuRI GGCC 1 cut(s) 199
BtgI CCRYGG 1 cut(s) 221
BtsCI GGATG 3 cut(s) 31, 231, 337
BveI ACCTGC 1 cut(s) 230
Cac8I GCNNGC 1 cut(s) 201
CseI GACGC 1 cut(s) 3
CsiI ACCWGGT 1 cut(s) 296
CviAII CATG 2 cut(s) 222, 267
CviJI RGCY 6 cut(s) 50, 129, 176, 187, 199, 220
CviKI_1 RGCY 6 cut(s) 50, 129, 176, 187, 199, 220
DpnI GATC 1 cut(s) 263
DpnII GATC 1 cut(s) 261
EaeI YGGCCR 1 cut(s) 197
Eco130I CCWWGG 1 cut(s) 221
Eco57I CTGAAG 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 296
EcoT14I CCWWGG 1 cut(s) 221
ErhI CCWWGG 1 cut(s) 221
FaeI CATG 2 cut(s) 225, 270
FaiI YATR 6 cut(s) 7, 12, 110, 170, 223, 268
FalI AAGNNNNNCTT 2 cut(s) 242, 274
FaqI GGGAC 1 cut(s) 113
FatI CATG 2 cut(s) 221, 266
FbaI TGATCA 1 cut(s) 261
Fnu4HI GCNGC 1 cut(s) 150
FokI GGATG 3 cut(s) 38, 238, 344
Fsp4HI GCNGC 1 cut(s) 150
GluI GCNGC 1 cut(s) 150
HaeIII GGCC 1 cut(s) 199
HgaI GACGC 1 cut(s) 3
Hin1II CATG 2 cut(s) 225, 270
HincII GTYRAC 2 cut(s) 18, 121
HindII GTYRAC 2 cut(s) 18, 121
HinfI GANTC 1 cut(s) 206
HpaI GTTAAC 1 cut(s) 121
HphI GGTGA 2 cut(s) 43, 52
Hpy166II GTNNAC 2 cut(s) 18, 121
Hpy188I TCNGA 1 cut(s) 211
Hpy188III TCNNGA 1 cut(s) 259
Hpy8I GTNNAC 2 cut(s) 18, 121
HpyAV CCTTC 1 cut(s) 47
HpyCH4III ACNGT 2 cut(s) 104, 125
HpyCH4V TGCA 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
Hsp92II CATG 2 cut(s) 225, 270
Ksp22I TGATCA 1 cut(s) 261
KspAI GTTAAC 1 cut(s) 121
Kzo9I GATC 1 cut(s) 261
LpnPI CCDG 7 cut(s) 82, 181, 213, 225, 283, 298, 310
Lsp1109I GCAGC 1 cut(s) 161
LweI GCATC 1 cut(s) 325
MabI ACCWGGT 1 cut(s) 296
MaeIII GTNAC 1 cut(s) 104
MalI GATC 1 cut(s) 263
MboI GATC 1 cut(s) 261
MboII GAAGA 2 cut(s) 259, 262
MlsI TGGCCA 1 cut(s) 199
MluCI AATT 1 cut(s) 318
MluNI TGGCCA 1 cut(s) 199
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 5 cut(s) 22, 31, 40, 86, 138
Mox20I TGGCCA 1 cut(s) 199
MroXI GAANNNNTTC 1 cut(s) 254
MscI TGGCCA 1 cut(s) 199
MseI TTAA 1 cut(s) 120
Msp20I TGGCCA 1 cut(s) 199
MspA1I CMGCKG 2 cut(s) 23, 203
MspR9I CCNGG 1 cut(s) 298
MvaI CCWGG 1 cut(s) 298
MwoI GCNNNNNNNGC 1 cut(s) 20
NcoI CCATGG 1 cut(s) 221
NdeII GATC 1 cut(s) 261
NlaIII CATG 2 cut(s) 225, 270
PdmI GAANNNNTTC 1 cut(s) 254
PfeI GAWTC 1 cut(s) 206
PkrI GCNGC 1 cut(s) 151
Psp6I CCWGG 1 cut(s) 296
PspGI CCWGG 1 cut(s) 296
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 1 cut(s) 261
ScrFI CCNGG 1 cut(s) 298
SetI ASST 7 cut(s) 33, 42, 58, 78, 178, 244, 299
SexAI ACCWGGT 1 cut(s) 296
SfaNI GCATC 1 cut(s) 325
Sse9I AATT 1 cut(s) 318
SsiI CCGC 2 cut(s) 23, 203
StyD4I CCNGG 1 cut(s) 296
StyI CCWWGG 1 cut(s) 221
TaaI ACNGT 2 cut(s) 104, 125
TaqI TCGA 1 cut(s) 78
TasI AATT 1 cut(s) 318
TfiI GAWTC 1 cut(s) 206
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TseI GCWGC 1 cut(s) 149
TspDTI ATGAA 1 cut(s) 279
XapI RAATTY 1 cut(s) 318
XmnI GAANNNNTTC 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.