Rh6DG121700

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000342
Physical Location & Seq
Forward (+)
17000106 .. 17002882
2777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG121700.1

Sequence Viewer

Length: 876 bp
ATGAACCAAACAGAAAGAGAAAACCAATCAAAAACATTAGAGATAATGGAGGTAGAGCAAGTTCTTCACATGAATGGCGGAGATGGCAAAACAAGCTACGCAAACCACTCACTTCTTCAAAGAGCTGTGATTTCGACGGTGAAGCCTATTGTGGATGCAACCATAGAGGAGCTCTGCAGCACTCTCTTCCCGGAGTGTCTGAAAATAGCAGACTTGGGATGCTCTTCGGGGCCCAATACCCTACTGGTAGTATCAGACATCATAGCCAACATCCAGAACACGTTTCGAAAGCTCAACCTTCCCCCGCCATCGCTTCAAGCATTCTTGAATGACCTTCCCCGGAACGATTTCAACACGGTGTTCAGGTCACTGCCTGGCTTCTATAACAAGCTCGATGAAGAACATGAGAACAAGTCGGGTCCTTGTTTCATTGCAGCAATGCCCGGTTCCTTTTATGGGAGGCTCTTTCCTGACAACTCTCTCCACTTTGTTCATTCTTCCTATGCTCTCATGTGGATCTCTGAGGTCCCAAAAGGTTTGGTAACGAAAGGAGGAGAGGGACTGAACAAGGGGAATATATATATAGCCAAGACAAGCTCACCCGCTGTGTTTAATGAATACTTTGAGCAATTCAAAAGGGACTTCACAGTCTTTCTGAGGTCTCGGGCACAAGAGCTAGTCCCGGGAGGTAGTATGGTCCTCACAACAATGGGCAGCATAAATAGCAAAGATCCCCTCTGCATTTGGGAATTTGTCGGATTAAAACTCCATGACATGGTTTTAGATGTATGCATGTGCCAGGCATTAGATTTCTTCATTTTGGATACGATAATCTTTCTCTCACTAACATACTATGATGATTTTTTCAGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

291

Amino Acids

32.68

Weight (kDa)

5.18

Isoelectric Point (pI)

44.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 54 - 262 1.8e-84 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14060 AT2G14060 AT3G11480 AT3G21950 AT3G21950 AT5G04370 AT5G04370 AT5G04370 AT5G04380 AT5G04380 AT5G04380 AT5G38020 AT5G38020 AT5G66430
fragaria_vesca FvH4_2g09290 FvH4_2g09290 FvH4_2g09310 FvH4_3g03130
malus_domestica MD10G1071000.v1.1 MD10G1071200.v1.1 MD10G1071500.v1.1 MD10G1218400.v1.1
prunus_persica Prupe.8G092700_v2.0.a1 Prupe.8G092800_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G092900_v2.0.a1 Prupe.8G093000_v2.0.a1 Prupe.8G093100_v2.0.a1 Prupe.8G093200_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093500_v2.0.a1 Prupe.8G093600_v2.0.a1
pyrus_communis pycom10g05660 pycom10g05680 pycom10g18420
rosa_chinensis RchiOBHm_Chr1g0324421 RchiOBHm_Chr1g0324461 RchiOBHm_Chr6g0265311 RchiOBHm_Chr6g0265321 RchiOBHm_Chr6g0265361 RchiOBHm_Chr6g0265391 RchiOBHm_Chr6g0265411
rosa_laevigata RLG00000014186 RLG00000014191 RLG00000014195 RLG00000014197 RLG00000025381 RLG00000030199
rosa_multiflora Rmu_co8237181.1_g000001 Rmu_sc0001780.1_g000008 Rmu_sc0001803.1_g000020 Rmu_sc0002550.1_g000004 Rmu_sc0004082.1_g000012 Rmu_sc0008601.1_g000002 Rmu_sc0011954.1_g000001 Rmu_sc0013000.1_g000001 Rmu_sc0016482.1_g000001 Rmu_sc0018713.1_g000002 Rmu_ssc0000066.1_g000015
rosa_roxburghii Rroxscaffold_159G00432720 Rroxscaffold_159G00432790 Rroxscaffold_159G00432850 Rroxscaffold_175G00432320 Rroxscaffold_175G00432340 Rroxscaffold_175G00432350 Rroxscaffold_175G00432360 Rroxscaffold_2G00105600 Rroxscaffold_2G00105660 Rroxscaffold_4G00325530 Rroxscaffold_4G00325600 Rroxscaffold_4G00325670 Rroxscaffold_6G00424510 Rroxscaffold_7G00202680 Rroxscaffold_7G00202760 Rroxscaffold_7G00202800 Rroxscaffold_7G00202850
rosa_rugosa Rorug01G0045900 Rorug01G0046000 Rorug02G0355000 Rorug02G0355300 Rorug03G0004200 Rorug06G0016700 Rorug06G0016700 Rorug06G0016800 Rorug06G0017100
rosa_samantha Rh1AG061600 Rh1AG061700 Rh1BG052400 Rh1CG063500 Rh1CG063900 Rh1CG064100 Rh2BG415800 Rh3DG067100 Rh6AG138200 Rh6AG138400 Rh6AG138800 Rh6BG137100 Rh6BG137200 Rh6BG137600 Rh6DG121600 Rh6DG121700 Rh6DG121900
rosa_wichuraiana Rw1G005230 Rw1G005470 Rw2G033110 Rw6G011920 Rw6G011940 Rw6G011950 Rw6G011970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 647
AccB7I CCANNNNNTGG 1 cut(s) 775
AciI CCGC 3 cut(s) 78, 305, 603
AclWI GGATC 2 cut(s) 524, 725
AcsI RAATTY 1 cut(s) 749
AfiI CCNNNNNNNGG 2 cut(s) 456, 775
AflIII ACRYGT 1 cut(s) 279
AgsI TTSAA 5 cut(s) 119, 317, 328, 352, 634
AjnI CCWGG 2 cut(s) 373, 798
AluBI AGCT 7 cut(s) 96, 125, 172, 292, 391, 597, 676
AluI AGCT 7 cut(s) 96, 125, 172, 292, 391, 597, 676
Alw21I GWGCWC 1 cut(s) 174
Alw26I GTCTC 1 cut(s) 666
AlwI GGATC 2 cut(s) 524, 725
Ama87I CYCGRG 2 cut(s) 663, 682
AoxI GGCC 1 cut(s) 230
ApaI GGGCCC 1 cut(s) 234
ApeKI GCWGC 3 cut(s) 177, 434, 714
ApoI RAATTY 1 cut(s) 749
Asp700I GAANNNNTTC 1 cut(s) 347
AspS9I GGNCC 5 cut(s) 230, 231, 419, 526, 697
AsuC2I CCSGG 5 cut(s) 191, 340, 444, 683, 684
AsuHPI GGTGA 2 cut(s) 151, 591
AsuII TTCGAA 1 cut(s) 286
AvaI CYCGRG 2 cut(s) 663, 682
AvaII GGWCC 3 cut(s) 419, 526, 697
BaeGI GKGCMC 2 cut(s) 234, 670
BanII GRGCYC 2 cut(s) 174, 234
Bbv12I GWGCWC 1 cut(s) 174
BbvI GCAGC 3 cut(s) 189, 446, 726
BccI CCATC 2 cut(s) 77, 316
BciT130I CCWGG 2 cut(s) 375, 800
BciVI GTATCC 1 cut(s) 817
BcnI CCSGG 5 cut(s) 191, 340, 444, 683, 684
BcoDI GTCTC 1 cut(s) 666
BfaI CTAG 1 cut(s) 677
BfmI CTRYAG 1 cut(s) 175
BfuI GTATCC 1 cut(s) 817
BisI GCNGC 3 cut(s) 178, 435, 715
BlsI GCNGC 3 cut(s) 179, 436, 716
Bme1390I CCNGG 7 cut(s) 191, 340, 375, 444, 683, 684, 800
Bme18I GGWCC 3 cut(s) 419, 526, 697
BmeT110I CYCGRG 2 cut(s) 663, 682
BmgT120I GGNCC 5 cut(s) 230, 231, 419, 526, 697
BmiI GGNNCC 5 cut(s) 231, 232, 420, 448, 528
BmrFI CCNGG 7 cut(s) 191, 340, 375, 444, 683, 684, 800
BmsI GCATC 2 cut(s) 145, 209
Bpu14I TTCGAA 1 cut(s) 286
BpuMI CCSGG 5 cut(s) 191, 340, 444, 683, 684
BsaI GGTCTC 1 cut(s) 666
BsaJI CCNNGG 2 cut(s) 338, 682
Bsc4I CCNNNNNNNGG 2 cut(s) 456, 775
Bse1I ACTGG 1 cut(s) 249
Bse3DI GCAATG 2 cut(s) 429, 444
BseBI CCWGG 2 cut(s) 375, 800
BseDI CCNNGG 2 cut(s) 338, 682
BseGI GGATG 3 cut(s) 160, 224, 270
BseLI CCNNNNNNNGG 2 cut(s) 456, 775
BseMI GCAATG 2 cut(s) 429, 444
BseMII CTCAG 2 cut(s) 513, 647
BseNI ACTGG 1 cut(s) 249
BseRI GAGGAG 2 cut(s) 182, 567
BseSI GKGCMC 2 cut(s) 234, 670
BseXI GCAGC 3 cut(s) 189, 446, 726
BshFI GGCC 1 cut(s) 232
BsiHKAI GWGCWC 1 cut(s) 174
BsiHKCI CYCGRG 2 cut(s) 663, 682
BsiSI CCGG 4 cut(s) 191, 340, 444, 683
BslFI GGGAC 4 cut(s) 512, 573, 653, 665
BslI CCNNNNNNNGG 2 cut(s) 456, 775
BsmAI GTCTC 1 cut(s) 666
BsmFI GGGAC 4 cut(s) 512, 573, 653, 665
BsmI GAATGC 1 cut(s) 320
BsnI GGCC 1 cut(s) 232
Bso31I GGTCTC 1 cut(s) 666
BsoBI CYCGRG 2 cut(s) 663, 682
Bsp119I TTCGAA 1 cut(s) 286
Bsp120I GGGCCC 1 cut(s) 230
Bsp1286I GDGCHC 3 cut(s) 174, 234, 670
Bsp143I GATC 2 cut(s) 516, 730
BspACI CCGC 3 cut(s) 78, 305, 603
BspANI GGCC 1 cut(s) 232
BspCNI CTCAG 2 cut(s) 514, 648
BspLI GGNNCC 5 cut(s) 231, 232, 420, 448, 528
BspMAI CTGCAG 1 cut(s) 179
BspPI GGATC 2 cut(s) 524, 725
BspQI GCTCTTC 1 cut(s) 229
BspT104I TTCGAA 1 cut(s) 286
BspTNI GGTCTC 1 cut(s) 666
BsrDI GCAATG 2 cut(s) 429, 444
BsrI ACTGG 1 cut(s) 249
BssECI CCNNGG 2 cut(s) 338, 682
BssMI GATC 2 cut(s) 516, 730
Bst2UI CCWGG 2 cut(s) 375, 800
Bst4CI ACNGT 3 cut(s) 139, 358, 649
Bst6I CTCTTC 2 cut(s) 191, 229
BstBI TTCGAA 1 cut(s) 286
BstDEI CTNAG 2 cut(s) 522, 656
BstF5I GGATG 3 cut(s) 160, 224, 270
BstKTI GATC 2 cut(s) 519, 733
BstMAI GTCTC 1 cut(s) 666
BstMBI GATC 2 cut(s) 516, 730
BstMWI GCNNNNNNNGC 3 cut(s) 84, 93, 723
BstNI CCWGG 2 cut(s) 375, 800
BstNSI RCATGY 1 cut(s) 796
BstSCI CCNGG 7 cut(s) 189, 338, 373, 442, 681, 682, 798
BstSFI CTRYAG 1 cut(s) 175
BstSLI GKGCMC 2 cut(s) 234, 670
BstV1I GCAGC 3 cut(s) 189, 446, 726
BstX2I RGATCY 2 cut(s) 516, 730
BstYI RGATCY 2 cut(s) 516, 730
BsuI GTATCC 1 cut(s) 817
BsuRI GGCC 1 cut(s) 232
BtgZI GCGATG 1 cut(s) 294
BtsCI GGATG 3 cut(s) 160, 224, 270
BtsI GCAGTG 1 cut(s) 368
BtsIMutI CAGTG 1 cut(s) 368
Cfr13I GGNCC 5 cut(s) 230, 231, 419, 526, 697
Cfr9I CCCGGG 1 cut(s) 682
CviAII CATG 6 cut(s) 70, 404, 511, 770, 775, 793
DdeI CTNAG 2 cut(s) 522, 656
DpnI GATC 2 cut(s) 518, 732
DpnII GATC 2 cut(s) 516, 730
DrdI GACNNNNNNGTC 1 cut(s) 647
DseDI GACNNNNNNGTC 1 cut(s) 647
Eam1104I CTCTTC 2 cut(s) 191, 229
EarI CTCTTC 2 cut(s) 191, 229
EciI GGCGGA 1 cut(s) 93
Ecl136II GAGCTC 1 cut(s) 172
Eco24I GRGCYC 2 cut(s) 174, 234
Eco31I GGTCTC 1 cut(s) 666
Eco47I GGWCC 3 cut(s) 419, 526, 697
Eco53kI GAGCTC 1 cut(s) 172
Eco88I CYCGRG 2 cut(s) 663, 682
EcoICRI GAGCTC 1 cut(s) 172
EcoO109I RGGNCCY 3 cut(s) 230, 419, 526
EcoRII CCWGG 2 cut(s) 373, 798
EcoT22I ATGCAT 1 cut(s) 794
EcoT38I GRGCYC 2 cut(s) 174, 234
FaeI CATG 6 cut(s) 73, 407, 514, 773, 778, 796
FaqI GGGAC 4 cut(s) 512, 573, 653, 665
FatI CATG 6 cut(s) 69, 403, 510, 769, 774, 792
FauI CCCGC 2 cut(s) 312, 610
Fnu4HI GCNGC 3 cut(s) 178, 435, 715
FokI GGATG 3 cut(s) 167, 231, 257
FriOI GRGCYC 2 cut(s) 174, 234
Fsp4HI GCNGC 3 cut(s) 178, 435, 715
FspBI CTAG 1 cut(s) 677
GluI GCNGC 3 cut(s) 178, 435, 715
HaeIII GGCC 1 cut(s) 232
HapII CCGG 4 cut(s) 191, 340, 444, 683
Hin1II CATG 6 cut(s) 73, 407, 514, 773, 778, 796
HpaII CCGG 4 cut(s) 191, 340, 444, 683
HphI GGTGA 2 cut(s) 151, 591
Hpy188I TCNGA 5 cut(s) 201, 256, 523, 657, 758
Hpy188III TCNNGA 3 cut(s) 274, 325, 470
Hpy99I CGWCG 1 cut(s) 139
HpyAV CCTTC 2 cut(s) 308, 344
HpyCH4III ACNGT 3 cut(s) 139, 358, 649
HpyCH4IV ACGT 1 cut(s) 281
HpyCH4V TGCA 5 cut(s) 158, 177, 434, 741, 792
HpyF10VI GCNNNNNNNGC 3 cut(s) 84, 93, 723
HpyF3I CTNAG 2 cut(s) 522, 656
HpySE526I ACGT 1 cut(s) 281
Hsp92II CATG 6 cut(s) 73, 407, 514, 773, 778, 796
Kzo9I GATC 2 cut(s) 516, 730
LguI GCTCTTC 1 cut(s) 229
LmnI GCTCC 1 cut(s) 169
Lsp1109I GCAGC 3 cut(s) 189, 446, 726
LweI GCATC 2 cut(s) 145, 209
MaeI CTAG 1 cut(s) 677
MaeII ACGT 1 cut(s) 281
MaeIII GTNAC 2 cut(s) 366, 541
MalI GATC 2 cut(s) 518, 732
MboI GATC 2 cut(s) 516, 730
MboII GAAGA 7 cut(s) 56, 107, 178, 216, 410, 489, 805
MflI RGATCY 2 cut(s) 516, 730
MhlI GDGCHC 3 cut(s) 174, 234, 670
MluCI AATT 2 cut(s) 629, 749
MmeI TCCRAC 1 cut(s) 736
Mph1103I ATGCAT 1 cut(s) 794
MroXI GAANNNNTTC 1 cut(s) 347
MseI TTAA 2 cut(s) 612, 761
MslI CAYNNNNRTG 2 cut(s) 72, 707
MspA1I CMGCKG 1 cut(s) 605
MspI CCGG 4 cut(s) 191, 340, 444, 683
MspR9I CCNGG 7 cut(s) 191, 340, 375, 444, 683, 684, 800
Mva1269I GAATGC 1 cut(s) 320
MvaI CCWGG 2 cut(s) 375, 800
MwoI GCNNNNNNNGC 3 cut(s) 84, 93, 723
NciI CCSGG 5 cut(s) 191, 340, 444, 683, 684
NdeII GATC 2 cut(s) 516, 730
NlaIII CATG 6 cut(s) 73, 407, 514, 773, 778, 796
NlaIV GGNNCC 5 cut(s) 231, 232, 420, 448, 528
NmuCI GTSAC 1 cut(s) 366
NsiI ATGCAT 1 cut(s) 794
NspI RCATGY 1 cut(s) 796
NspV TTCGAA 1 cut(s) 286
PciSI GCTCTTC 1 cut(s) 229
PctI GAATGC 1 cut(s) 320
PdmI GAANNNNTTC 1 cut(s) 347
PflMI CCANNNNNTGG 1 cut(s) 775
PfoI TCCNGGA 1 cut(s) 189
PkrI GCNGC 3 cut(s) 179, 436, 716
PpuMI RGGWCCY 2 cut(s) 419, 526
Psp124BI GAGCTC 1 cut(s) 174
Psp5II RGGWCCY 2 cut(s) 419, 526
Psp6I CCWGG 2 cut(s) 373, 798
PspGI CCWGG 2 cut(s) 373, 798
PspN4I GGNNCC 5 cut(s) 231, 232, 420, 448, 528
PspOMI GGGCCC 1 cut(s) 230
PspPI GGNCC 5 cut(s) 230, 231, 419, 526, 697
PspPPI RGGWCCY 2 cut(s) 419, 526
PsrI GAACNNNNNNTAC 2 cut(s) 45, 77
PstI CTGCAG 1 cut(s) 179
PsuI RGATCY 2 cut(s) 516, 730
RseI CAYNNNNRTG 2 cut(s) 72, 707
SacI GAGCTC 1 cut(s) 174
SapI GCTCTTC 1 cut(s) 229
SaqAI TTAA 2 cut(s) 612, 761
SatI GCNGC 3 cut(s) 178, 435, 715
Sau3AI GATC 2 cut(s) 516, 730
Sau96I GGNCC 5 cut(s) 230, 231, 419, 526, 697
ScrFI CCNGG 7 cut(s) 191, 340, 375, 444, 683, 684, 800
SduI GDGCHC 3 cut(s) 174, 234, 670
SfaNI GCATC 2 cut(s) 145, 209
SfcI CTRYAG 1 cut(s) 175
SfuI TTCGAA 1 cut(s) 286
SinI GGWCC 3 cut(s) 419, 526, 697
SmaI CCCGGG 1 cut(s) 684
SmiMI CAYNNNNRTG 2 cut(s) 72, 707
Sse9I AATT 2 cut(s) 629, 749
SsiI CCGC 3 cut(s) 78, 305, 603
SspMI CTAG 1 cut(s) 677
SstI GAGCTC 1 cut(s) 174
StyD4I CCNGG 7 cut(s) 189, 338, 373, 442, 681, 682, 798
TaaI ACNGT 3 cut(s) 139, 358, 649
TaiI ACGT 1 cut(s) 284
TaqI TCGA 3 cut(s) 134, 286, 393
TasI AATT 2 cut(s) 629, 749
Tru1I TTAA 2 cut(s) 612, 761
Tru9I TTAA 2 cut(s) 612, 761
TscAI CASTG 1 cut(s) 375
TseFI GTSAC 1 cut(s) 366
TseI GCWGC 3 cut(s) 177, 434, 714
Tsp45I GTSAC 1 cut(s) 366
TspDTI ATGAA 7 cut(s) 17, 86, 411, 418, 482, 630, 805
TspMI CCCGGG 1 cut(s) 682
TspRI CASTG 1 cut(s) 375
Van91I CCANNNNNTGG 1 cut(s) 775
VpaK11BI GGWCC 3 cut(s) 419, 526, 697
XapI RAATTY 1 cut(s) 749
XceI RCATGY 1 cut(s) 796
XcmI CCANNNNNNNNNTGG 1 cut(s) 241
XmaI CCCGGG 1 cut(s) 682
XmnI GAANNNNTTC 1 cut(s) 347
XspI CTAG 1 cut(s) 677
Zsp2I ATGCAT 1 cut(s) 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.