Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0004297

Physical Location & Seq

Genomic Coordinates Reverse (-)

4077375 .. 4081722

Gene Structure 4348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G025200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGGGGGAGGAATATACGGGGCAGTGATGGAGGAGATAACGTTGTACACGGGACTTTCACCGGCAGCCTTCTTCACAATCGCAGGGATGATGGTTGTGGTTTACAGAATTGTCAGCGCAATGTTTGTGGGGCCCGAAGACTACAACAAGCCTCCCATGGCGGCGAGCATCGGCACCGATTCCAATTTGGTTAACAAGTACTTGAACCTCAACCAAACCACCACCACAACTCCGACGCAAATGGGAGACATGACGGAGCAACAATTGAGAGGCTTTGATGGTTCTGATCCCAATAAGCCTCTGCTCATGGCCATCAGAGCTCAGATCTATGACGTCTCTTCCTCCAGGAATTTTTATGGTCCTGGGGGACCGTACGCAATGTTTGCTGGAAGAGATGCTAGCAGAGCTTTAGCTCTTCTGTCCTTCAAACCCCAAGACATAAATGGCAACATTGAAGGTCTTGGTCCCGATGAACTTGAGATTTTACAGGACTGGGAAGATAAATTCATTGAAAAATATCCCAATGTTGGGAAGCTTGTAGCAGAGCCAACAAAGACTGAGCAAACTGAAGCTCAACAGCAAGGAATTGGGCAAGAACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

201

Amino Acids

21.81

Weight (kDa)

4.43

Isoelectric Point (pI)

48.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48890
fragaria_vesca	FvH4_1g29440
malus_domestica	MD12G1015300.v1.1
prunus_persica	Prupe.7G025200_v2.0.a1 Prupe.7G025200_v2.0.a1 Prupe.7G025200_v2.0.a1
pyrus_communis	pycom14g01130
rosa_chinensis	RchiOBHm_Chr3g0495341
rosa_laevigata	RLG00000022628
rosa_multiflora	Rmu_sc0002490.1_g000021 Rmu_sc0003395.1_g000008 Rmu_sc0010754.1_g000014 Rmu_sc0026212.1_g000002 Rmu_ssc0000243.1_g000006
rosa_roxburghii	Rroxscaffold_6G00390610
rosa_rugosa	Rorug01G0121500 Rorug02G0355300 Rorug03G0272700 Rorug05G0050400 Rorug05G0483400
rosa_samantha	Rh2AG394300 Rh2AG414100 Rh2CG381000 Rh2CG400500 Rh2DG433900 Rh3AG320800 Rh3BG355800 Rh3CG352700 Rh3DG354900 Rh3DG355000 Rh4BG244800
rosa_wichuraiana	Rw3G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	336
AccB1I	GGYRCC	1 cut(s)	173
AciI	CCGC	1 cut(s)	161
AclI	AACGTT	1 cut(s)	41
AclWI	GGATC	1 cut(s)	281
AcoI	YGGCCR	1 cut(s)	309
AcsI	RAATTY	2 cut(s)	349, 503
AcuI	CTGAAG	1 cut(s)	588
AcyI	GRCGYC	1 cut(s)	333
AfaI	GTAC	3 cut(s)	47, 200, 374
AfiI	CCNNNNNNNGG	2 cut(s)	527, 528
AgsI	TTSAA	4 cut(s)	205, 427, 455, 512
AjnI	CCWGG	2 cut(s)	344, 361
AluBI	AGCT	5 cut(s)	320, 407, 413, 535, 572
AluI	AGCT	5 cut(s)	320, 407, 413, 535, 572
Alw21I	GWGCWC	1 cut(s)	322
Alw26I	GTCTC	2 cut(s)	240, 340
AlwI	GGATC	1 cut(s)	281
AoxI	GGCC	2 cut(s)	131, 309
ApaI	GGGCCC	1 cut(s)	135
ApeKI	GCWGC	1 cut(s)	65
ApoI	RAATTY	2 cut(s)	349, 503
AspLEI	GCGC	1 cut(s)	119
AspS9I	GGNCC	5 cut(s)	131, 132, 359, 368, 464
AsuHPI	GGTGA	1 cut(s)	51
AsuNHI	GCTAGC	1 cut(s)	398
AvaII	GGWCC	3 cut(s)	359, 368, 464
BaeGI	GKGCMC	1 cut(s)	135
BalI	TGGCCA	1 cut(s)	311
BanI	GGYRCC	1 cut(s)	173
BanII	GRGCYC	2 cut(s)	135, 322
BbsI	GAAGAC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	322
BbvI	GCAGC	1 cut(s)	77
BccI	CCATC	4 cut(s)	22, 85, 272, 320
BciT130I	CCWGG	2 cut(s)	346, 363
BcoDI	GTCTC	2 cut(s)	240, 340
BfaI	CTAG	1 cut(s)	399
BglII	AGATCT	1 cut(s)	324
BisI	GCNGC	2 cut(s)	66, 162
BlsI	GCNGC	2 cut(s)	67, 163
BmcAI	AGTACT	1 cut(s)	200
Bme1390I	CCNGG	2 cut(s)	346, 363
Bme18I	GGWCC	3 cut(s)	359, 368, 464
BmgT120I	GGNCC	5 cut(s)	131, 132, 359, 368, 464
BmiI	GGNNCC	5 cut(s)	132, 133, 175, 369, 466
BmrFI	CCNGG	2 cut(s)	346, 363
BmrI	ACTGGG	1 cut(s)	502
BmsI	GCATC	2 cut(s)	177, 385
BmtI	GCTAGC	1 cut(s)	402
BmuI	ACTGGG	1 cut(s)	502
BpiI	GAAGAC	1 cut(s)	144
BpmI	CTGGAG	1 cut(s)	328
BpuEI	CTTGAG	1 cut(s)	497
BsaHI	GRCGYC	1 cut(s)	333
BsaJI	CCNNGG	2 cut(s)	156, 362
BsaXI	ACNNNNNCTCC	4 cut(s)	26, 56, 214, 244
Bsc4I	CCNNNNNNNGG	2 cut(s)	527, 528
Bse118I	RCCGGY	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	497
Bse3DI	GCAATG	2 cut(s)	126, 384
BseBI	CCWGG	2 cut(s)	346, 363
BseDI	CCNNGG	2 cut(s)	156, 362
BseGI	GGATG	1 cut(s)	93
BseLI	CCNNNNNNNGG	2 cut(s)	527, 528
BseMI	GCAATG	2 cut(s)	126, 384
BseMII	CTCAG	2 cut(s)	335, 549
BseNI	ACTGG	1 cut(s)	497
BseRI	GAGGAG	1 cut(s)	47
BseSI	GKGCMC	1 cut(s)	135
BseXI	GCAGC	1 cut(s)	77
BshFI	GGCC	2 cut(s)	133, 311
BshNI	GGYRCC	1 cut(s)	173
BsiHKAI	GWGCWC	1 cut(s)	322
BsiSI	CCGG	1 cut(s)	62
BsiWI	CGTACG	1 cut(s)	372
BslFI	GGGAC	3 cut(s)	66, 381, 450
BslI	CCNNNNNNNGG	2 cut(s)	527, 528
BsmAI	GTCTC	2 cut(s)	240, 340
BsmBI	CGTCTC	1 cut(s)	340
BsmFI	GGGAC	3 cut(s)	66, 381, 450
BsnI	GGCC	2 cut(s)	133, 311
Bsp120I	GGGCCC	1 cut(s)	131
Bsp1286I	GDGCHC	2 cut(s)	135, 322
Bsp1407I	TGTACA	1 cut(s)	45
Bsp143I	GATC	2 cut(s)	286, 324
Bsp19I	CCATGG	1 cut(s)	156
BspACI	CCGC	1 cut(s)	161
BspANI	GGCC	2 cut(s)	133, 311
BspCNI	CTCAG	2 cut(s)	334, 550
BspLI	GGNNCC	5 cut(s)	132, 133, 175, 369, 466
BspOI	GCTAGC	1 cut(s)	402
BspPI	GGATC	1 cut(s)	281
BspQI	GCTCTTC	1 cut(s)	420
BspT107I	GGYRCC	1 cut(s)	173
BsrDI	GCAATG	2 cut(s)	126, 384
BsrFI	RCCGGY	1 cut(s)	61
BsrGI	TGTACA	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	497
BssAI	RCCGGY	1 cut(s)	61
BssECI	CCNNGG	2 cut(s)	156, 362
BssMI	GATC	2 cut(s)	286, 324
BssNI	GRCGYC	1 cut(s)	333
BssT1I	CCWWGG	1 cut(s)	156
Bst2UI	CCWGG	2 cut(s)	346, 363
Bst4CI	ACNGT	1 cut(s)	372
Bst6I	CTCTTC	3 cut(s)	343, 385, 420
BstACI	GRCGYC	1 cut(s)	333
BstAPI	GCANNNNNTGC	1 cut(s)	383
BstAUI	TGTACA	1 cut(s)	45
BstC8I	GCNNGC	2 cut(s)	166, 400
BstDEI	CTNAG	2 cut(s)	321, 558
BstDSI	CCRYGG	1 cut(s)	156
BstF5I	GGATG	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	2 cut(s)	289, 327
BstMAI	GTCTC	2 cut(s)	240, 340
BstMBI	GATC	2 cut(s)	286, 324
BstMWI	GCNNNNNNNGC	3 cut(s)	317, 383, 404
BstNI	CCWGG	2 cut(s)	346, 363
BstSCI	CCNGG	2 cut(s)	344, 361
BstSLI	GKGCMC	1 cut(s)	135
BstV1I	GCAGC	1 cut(s)	77
BstV2I	GAAGAC	1 cut(s)	144
BstX2I	RGATCY	1 cut(s)	324
BstYI	RGATCY	1 cut(s)	324
BsuRI	GGCC	2 cut(s)	133, 311
BtgI	CCRYGG	1 cut(s)	156
BtsCI	GGATG	1 cut(s)	93
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	2 cut(s)	166, 400
CfoI	GCGC	1 cut(s)	119
Cfr10I	RCCGGY	1 cut(s)	61
Cfr13I	GGNCC	5 cut(s)	131, 132, 359, 368, 464
CseI	GACGC	1 cut(s)	244
Csp6I	GTAC	3 cut(s)	46, 199, 373
CspCI	CAANNNNNGTGG	2 cut(s)	108, 143
CviAII	CATG	3 cut(s)	157, 250, 307
CviQI	GTAC	3 cut(s)	46, 199, 373
DdeI	CTNAG	2 cut(s)	321, 558
DpnI	GATC	2 cut(s)	288, 326
DpnII	GATC	2 cut(s)	286, 324
EaeI	YGGCCR	1 cut(s)	309
Eam1104I	CTCTTC	3 cut(s)	343, 385, 420
EarI	CTCTTC	3 cut(s)	343, 385, 420
Ecl136II	GAGCTC	1 cut(s)	320
Eco130I	CCWWGG	1 cut(s)	156
Eco24I	GRGCYC	2 cut(s)	135, 322
Eco47I	GGWCC	3 cut(s)	359, 368, 464
Eco53kI	GAGCTC	1 cut(s)	320
Eco57I	CTGAAG	1 cut(s)	588
EcoICRI	GAGCTC	1 cut(s)	320
EcoO109I	RGGNCCY	1 cut(s)	131
EcoRII	CCWGG	2 cut(s)	344, 361
EcoT14I	CCWWGG	1 cut(s)	156
EcoT38I	GRGCYC	2 cut(s)	135, 322
ErhI	CCWWGG	1 cut(s)	156
Esp3I	CGTCTC	1 cut(s)	340
FaeI	CATG	3 cut(s)	160, 253, 310
FaiI	YATR	7 cut(s)	16, 158, 251, 308, 330, 357, 440
FaqI	GGGAC	3 cut(s)	66, 381, 450
FatI	CATG	3 cut(s)	156, 249, 306
Fnu4HI	GCNGC	2 cut(s)	66, 162
FokI	GGATG	1 cut(s)	100
FriOI	GRGCYC	2 cut(s)	135, 322
Fsp4HI	GCNGC	2 cut(s)	66, 162
FspBI	CTAG	1 cut(s)	399
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	2 cut(s)	66, 162
GsuI	CTGGAG	1 cut(s)	328
HaeIII	GGCC	2 cut(s)	133, 311
HapII	CCGG	1 cut(s)	62
HgaI	GACGC	1 cut(s)	244
HhaI	GCGC	1 cut(s)	119
Hin1I	GRCGYC	1 cut(s)	333
Hin1II	CATG	3 cut(s)	160, 253, 310
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HindIII	AAGCTT	1 cut(s)	533
HinfI	GANTC	1 cut(s)	179
HpaI	GTTAAC	1 cut(s)	193
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	1 cut(s)	51
Hpy166II	GTNNAC	3 cut(s)	48, 103, 193
Hpy188I	TCNGA	4 cut(s)	234, 286, 317, 324
Hpy188III	TCNNGA	1 cut(s)	467
Hpy8I	GTNNAC	3 cut(s)	48, 103, 193
Hpy99I	CGWCG	1 cut(s)	238
HpyAV	CCTTC	3 cut(s)	79, 433, 449
HpyCH4III	ACNGT	1 cut(s)	372
HpyCH4IV	ACGT	2 cut(s)	41, 333
HpyF10VI	GCNNNNNNNGC	3 cut(s)	317, 383, 404
HpyF3I	CTNAG	2 cut(s)	321, 558
HpySE526I	ACGT	2 cut(s)	41, 333
Hsp92I	GRCGYC	1 cut(s)	333
Hsp92II	CATG	3 cut(s)	160, 253, 310
HspAI	GCGC	1 cut(s)	117
KspAI	GTTAAC	1 cut(s)	193
Kzo9I	GATC	2 cut(s)	286, 324
LguI	GCTCTTC	1 cut(s)	420
LmnI	GCTCC	1 cut(s)	256
LpnPI	CCDG	9 cut(s)	69, 75, 331, 348, 358, 372, 375, 473, 478
Lsp1109I	GCAGC	1 cut(s)	77
LweI	GCATC	2 cut(s)	177, 385
MaeI	CTAG	1 cut(s)	399
MaeII	ACGT	2 cut(s)	41, 333
MalI	GATC	2 cut(s)	288, 326
MboI	GATC	2 cut(s)	286, 324
MboII	GAAGA	6 cut(s)	64, 149, 330, 402, 407, 509
MfeI	CAATTG	1 cut(s)	263
MflI	RGATCY	1 cut(s)	324
MhlI	GDGCHC	2 cut(s)	135, 322
MlsI	TGGCCA	1 cut(s)	311
MluCI	AATT	6 cut(s)	108, 184, 263, 349, 503, 585
MluNI	TGGCCA	1 cut(s)	311
MmeI	TCCRAC	1 cut(s)	257
MnlI	CCTC	6 cut(s)	25, 162, 218, 263, 309, 352
Mox20I	TGGCCA	1 cut(s)	311
MscI	TGGCCA	1 cut(s)	311
MseI	TTAA	1 cut(s)	192
Msp20I	TGGCCA	1 cut(s)	311
MspI	CCGG	1 cut(s)	62
MspR9I	CCNGG	2 cut(s)	346, 363
MunI	CAATTG	1 cut(s)	263
MvaI	CCWGG	2 cut(s)	346, 363
MwoI	GCNNNNNNNGC	3 cut(s)	317, 383, 404
NcoI	CCATGG	1 cut(s)	156
NdeII	GATC	2 cut(s)	286, 324
NheI	GCTAGC	1 cut(s)	398
NlaIII	CATG	3 cut(s)	160, 253, 310
NlaIV	GGNNCC	5 cut(s)	132, 133, 175, 369, 466
PciSI	GCTCTTC	1 cut(s)	420
PfeI	GAWTC	1 cut(s)	179
Pfl23II	CGTACG	1 cut(s)	372
PfoI	TCCNGGA	1 cut(s)	344
PkrI	GCNGC	2 cut(s)	67, 163
Psp124BI	GAGCTC	1 cut(s)	322
Psp1406I	AACGTT	1 cut(s)	41
Psp6I	CCWGG	2 cut(s)	344, 361
PspGI	CCWGG	2 cut(s)	344, 361
PspLI	CGTACG	1 cut(s)	372
PspN4I	GGNNCC	5 cut(s)	132, 133, 175, 369, 466
PspOMI	GGGCCC	1 cut(s)	131
PspPI	GGNCC	5 cut(s)	131, 132, 359, 368, 464
PsuI	RGATCY	1 cut(s)	324
RsaI	GTAC	3 cut(s)	47, 200, 374
RsaNI	GTAC	3 cut(s)	46, 199, 373
SacI	GAGCTC	1 cut(s)	322
SapI	GCTCTTC	1 cut(s)	420
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	2 cut(s)	66, 162
Sau3AI	GATC	2 cut(s)	286, 324
Sau96I	GGNCC	5 cut(s)	131, 132, 359, 368, 464
ScaI	AGTACT	1 cut(s)	200
ScrFI	CCNGG	2 cut(s)	346, 363
SduI	GDGCHC	2 cut(s)	135, 322
SetI	ASST	9 cut(s)	44, 210, 322, 336, 409, 415, 460, 537, 574
SfaNI	GCATC	2 cut(s)	177, 385
SinI	GGWCC	3 cut(s)	359, 368, 464
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	6 cut(s)	108, 184, 263, 349, 503, 585
SsiI	CCGC	1 cut(s)	161
SspMI	CTAG	1 cut(s)	399
SstI	GAGCTC	1 cut(s)	322
StyD4I	CCNGG	2 cut(s)	344, 361
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	1 cut(s)	372
TaiI	ACGT	2 cut(s)	44, 336
TasI	AATT	6 cut(s)	108, 184, 263, 349, 503, 585
TatI	WGTACW	2 cut(s)	45, 198
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	1 cut(s)	30
TseI	GCWGC	1 cut(s)	65
TspDTI	ATGAA	2 cut(s)	486, 496
TspGWI	ACGGA	1 cut(s)	269
TspRI	CASTG	1 cut(s)	30
VpaK11BI	GGWCC	3 cut(s)	359, 368, 464
XapI	RAATTY	2 cut(s)	349, 503
XcmI	CCANNNNNNNNNTGG	1 cut(s)	440
XspI	CTAG	1 cut(s)	399
ZraI	GACGTC	1 cut(s)	334
ZrmI	AGTACT	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.