Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004297

Physical Location & Seq

Genomic Coordinates Forward (+)

62722731 .. 62723059

Gene Structure 329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG433900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGAGGATATACGAGGTGGTGATGGAGGAGATAACAGTGTACATGGGGCTATCACTAGCAGTGTTTTTCACAATCGCTAGGATGGTGGTCGTCGTTTACAGATATGTTACCATAATGTTTATGGCTCTCGAAGATTACAACAATCCTCCGGTGGTGAGTAGTGCTAATTCAGAATTGGTGAACAAGTATTTCAATCCCAAGATCGCCATGACGCCAAGCTCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

75

Amino Acids

8.61

Weight (kDa)

5.11

Isoelectric Point (pI)

34.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48890
fragaria_vesca	FvH4_1g29440
malus_domestica	MD12G1015300.v1.1
prunus_persica	Prupe.7G025200_v2.0.a1 Prupe.7G025200_v2.0.a1 Prupe.7G025200_v2.0.a1
pyrus_communis	pycom14g01130
rosa_chinensis	RchiOBHm_Chr3g0495341
rosa_laevigata	RLG00000022628
rosa_multiflora	Rmu_sc0002490.1_g000021 Rmu_sc0003395.1_g000008 Rmu_sc0010754.1_g000014 Rmu_sc0026212.1_g000002 Rmu_ssc0000243.1_g000006
rosa_roxburghii	Rroxscaffold_6G00390610
rosa_rugosa	Rorug01G0121500 Rorug02G0355300 Rorug03G0272700 Rorug05G0050400 Rorug05G0483400
rosa_samantha	Rh2AG394300 Rh2AG414100 Rh2CG381000 Rh2CG400500 Rh2DG433900 Rh3AG320800 Rh3BG355800 Rh3CG352700 Rh3DG354900 Rh3DG355000 Rh4BG244800
rosa_wichuraiana	Rw3G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcyI	GRCGYC	1 cut(s)	212
AfaI	GTAC	1 cut(s)	41
AgsI	TTSAA	1 cut(s)	193
AluBI	AGCT	1 cut(s)	219
AluI	AGCT	1 cut(s)	219
AsuHPI	GGTGA	3 cut(s)	31, 166, 190
BccI	CCATC	2 cut(s)	16, 76
BfaI	CTAG	2 cut(s)	56, 78
BsaHI	GRCGYC	1 cut(s)	212
BsaWI	WCCGGW	1 cut(s)	148
BseGI	GGATG	1 cut(s)	87
BseRI	GAGGAG	1 cut(s)	41
BsiSI	CCGG	1 cut(s)	149
Bsp1407I	TGTACA	1 cut(s)	39
Bsp143I	GATC	1 cut(s)	201
BsrGI	TGTACA	1 cut(s)	39
BssMI	GATC	1 cut(s)	201
BssNI	GRCGYC	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	37
BstACI	GRCGYC	1 cut(s)	212
BstAUI	TGTACA	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	87
BstKTI	GATC	1 cut(s)	204
BstMBI	GATC	1 cut(s)	201
BtsCI	GGATG	1 cut(s)	87
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	2 cut(s)	42, 66
CseI	GACGC	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	2 cut(s)	43, 208
CviJI	RGCY	3 cut(s)	49, 125, 219
CviKI_1	RGCY	3 cut(s)	49, 125, 219
CviQI	GTAC	1 cut(s)	40
DpnI	GATC	1 cut(s)	203
DpnII	GATC	1 cut(s)	201
FaeI	CATG	2 cut(s)	46, 211
FaiI	YATR	6 cut(s)	10, 44, 105, 113, 122, 209
FatI	CATG	2 cut(s)	42, 207
FokI	GGATG	1 cut(s)	94
FspBI	CTAG	2 cut(s)	56, 78
HapII	CCGG	1 cut(s)	149
HgaI	GACGC	1 cut(s)	220
Hin1I	GRCGYC	1 cut(s)	212
Hin1II	CATG	2 cut(s)	46, 211
HpaII	CCGG	1 cut(s)	149
HphI	GGTGA	3 cut(s)	31, 166, 190
Hpy166II	GTNNAC	3 cut(s)	40, 97, 181
Hpy188I	TCNGA	1 cut(s)	172
Hpy188III	TCNNGA	1 cut(s)	128
Hpy8I	GTNNAC	3 cut(s)	40, 97, 181
Hpy99I	CGWCG	1 cut(s)	95
HpyCH4III	ACNGT	1 cut(s)	37
Hsp92I	GRCGYC	1 cut(s)	212
Hsp92II	CATG	2 cut(s)	46, 211
Kzo9I	GATC	1 cut(s)	201
LpnPI	CCDG	1 cut(s)	162
MaeI	CTAG	2 cut(s)	56, 78
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	1 cut(s)	203
MboI	GATC	1 cut(s)	201
MboII	GAAGA	1 cut(s)	143
MluCI	AATT	2 cut(s)	166, 173
MnlI	CCTC	3 cut(s)	7, 19, 156
MspI	CCGG	1 cut(s)	149
NdeII	GATC	1 cut(s)	201
NlaIII	CATG	2 cut(s)	46, 211
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
Sau3AI	GATC	1 cut(s)	201
SetI	ASST	2 cut(s)	18, 221
SgeI	CNNG	9 cut(s)	25, 55, 68, 90, 140, 161, 196, 211, 220
Sse9I	AATT	2 cut(s)	166, 173
SspMI	CTAG	2 cut(s)	56, 78
TaaI	ACNGT	1 cut(s)	37
TaqI	TCGA	1 cut(s)	129
TasI	AATT	2 cut(s)	166, 173
TatI	WGTACW	1 cut(s)	39
TscAI	CASTG	2 cut(s)	42, 66
TspRI	CASTG	2 cut(s)	42, 66
XcmI	CCANNNNNNNNNTGG	1 cut(s)	118
XspI	CTAG	2 cut(s)	56, 78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.