Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003395.1

Orthogroup ID

OG0004297

Physical Location & Seq

Genomic Coordinates Reverse (-)

41712 .. 42023

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003395.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

atgaggatatatgaggtggtgatggaaaagataacagtgtacatggggctatcaccgacagtgtttttcacaatcgctaggatggtggtcgtcatttacagatatgttaccacaatgtttatggctctcgaagattacaacaatcctccggtggtgagtagtgctaattcagaattggtgaacaagtacttcaatcctaagatcgccatgacgccaagctcaatccaagtcgaggatatgacggagcaagagcttagaggatatgatgggtctgaccccaataagcccgttcttatgaccatcaaagcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

103

Amino Acids

11.77

Weight (kDa)

4.99

Isoelectric Point (pI)

38.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48890
fragaria_vesca	FvH4_1g29440
malus_domestica	MD12G1015300.v1.1
prunus_persica	Prupe.7G025200_v2.0.a1 Prupe.7G025200_v2.0.a1 Prupe.7G025200_v2.0.a1
pyrus_communis	pycom14g01130
rosa_chinensis	RchiOBHm_Chr3g0495341
rosa_laevigata	RLG00000022628
rosa_multiflora	Rmu_sc0002490.1_g000021 Rmu_sc0003395.1_g000008 Rmu_sc0010754.1_g000014 Rmu_sc0026212.1_g000002 Rmu_ssc0000243.1_g000006
rosa_roxburghii	Rroxscaffold_6G00390610
rosa_rugosa	Rorug01G0121500 Rorug02G0355300 Rorug03G0272700 Rorug05G0050400 Rorug05G0483400
rosa_samantha	Rh2AG394300 Rh2AG414100 Rh2CG381000 Rh2CG400500 Rh2DG433900 Rh3AG320800 Rh3BG355800 Rh3CG352700 Rh3DG354900 Rh3DG355000 Rh4BG244800
rosa_wichuraiana	Rw3G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcyI	GRCGYC	1 cut(s)	212
AfaI	GTAC	2 cut(s)	41, 188
AfiI	CCNNNNNNNGG	1 cut(s)	232
AgsI	TTSAA	1 cut(s)	193
AluBI	AGCT	3 cut(s)	219, 253, 308
AluI	AGCT	3 cut(s)	219, 253, 308
AsuHPI	GGTGA	4 cut(s)	31, 45, 166, 190
BccI	CCATC	4 cut(s)	16, 76, 260, 308
BfaI	CTAG	1 cut(s)	78
BmcAI	AGTACT	1 cut(s)	188
BsaHI	GRCGYC	1 cut(s)	212
BsaWI	WCCGGW	1 cut(s)	148
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
BseGI	GGATG	1 cut(s)	87
BseLI	CCNNNNNNNGG	1 cut(s)	232
BsiSI	CCGG	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	232
Bsp1407I	TGTACA	1 cut(s)	39
Bsp143I	GATC	1 cut(s)	201
BsrGI	TGTACA	1 cut(s)	39
BssMI	GATC	1 cut(s)	201
BssNI	GRCGYC	1 cut(s)	212
Bst4CI	ACNGT	2 cut(s)	37, 61
BstACI	GRCGYC	1 cut(s)	212
BstAUI	TGTACA	1 cut(s)	39
BstDEI	CTNAG	3 cut(s)	198, 254, 309
BstF5I	GGATG	1 cut(s)	87
BstKTI	GATC	1 cut(s)	204
BstMBI	GATC	1 cut(s)	201
BtsCI	GGATG	1 cut(s)	87
BtsIMutI	CAGTG	2 cut(s)	42, 66
CseI	GACGC	1 cut(s)	220
Csp6I	GTAC	2 cut(s)	40, 187
CviAII	CATG	2 cut(s)	43, 208
CviJI	RGCY	6 cut(s)	49, 125, 219, 253, 286, 308
CviKI_1	RGCY	6 cut(s)	49, 125, 219, 253, 286, 308
CviQI	GTAC	2 cut(s)	40, 187
DdeI	CTNAG	3 cut(s)	198, 254, 309
DpnI	GATC	1 cut(s)	203
DpnII	GATC	1 cut(s)	201
FaeI	CATG	2 cut(s)	46, 211
FaiI	YATR	9 cut(s)	10, 12, 44, 105, 122, 209, 239, 264, 296
FatI	CATG	2 cut(s)	42, 207
FokI	GGATG	1 cut(s)	94
FspBI	CTAG	1 cut(s)	78
HapII	CCGG	1 cut(s)	149
HgaI	GACGC	1 cut(s)	220
Hin1I	GRCGYC	1 cut(s)	212
Hin1II	CATG	2 cut(s)	46, 211
HindIII	AAGCTT	1 cut(s)	306
HpaII	CCGG	1 cut(s)	149
HphI	GGTGA	4 cut(s)	31, 45, 166, 190
Hpy166II	GTNNAC	2 cut(s)	40, 181
Hpy188I	TCNGA	2 cut(s)	172, 274
Hpy188III	TCNNGA	1 cut(s)	128
Hpy8I	GTNNAC	2 cut(s)	40, 181
HpyCH4III	ACNGT	2 cut(s)	37, 61
HpyF3I	CTNAG	3 cut(s)	198, 254, 309
Hsp92I	GRCGYC	1 cut(s)	212
Hsp92II	CATG	2 cut(s)	46, 211
Kzo9I	GATC	1 cut(s)	201
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	1 cut(s)	162
MaeI	CTAG	1 cut(s)	78
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	1 cut(s)	203
MboI	GATC	1 cut(s)	201
MboII	GAAGA	1 cut(s)	143
MluCI	AATT	2 cut(s)	166, 173
MnlI	CCTC	4 cut(s)	7, 156, 226, 251
MspI	CCGG	1 cut(s)	149
NdeII	GATC	1 cut(s)	201
NlaIII	CATG	2 cut(s)	46, 211
RsaI	GTAC	2 cut(s)	41, 188
RsaNI	GTAC	2 cut(s)	40, 187
Sau3AI	GATC	1 cut(s)	201
ScaI	AGTACT	1 cut(s)	188
SetI	ASST	4 cut(s)	18, 221, 255, 310
Sse9I	AATT	2 cut(s)	166, 173
SspMI	CTAG	1 cut(s)	78
TaaI	ACNGT	2 cut(s)	37, 61
TaqI	TCGA	2 cut(s)	129, 231
TasI	AATT	2 cut(s)	166, 173
TatI	WGTACW	2 cut(s)	39, 186
TscAI	CASTG	2 cut(s)	42, 66
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	2 cut(s)	42, 66
XcmI	CCANNNNNNNNNTGG	1 cut(s)	118
XspI	CTAG	1 cut(s)	78
ZrmI	AGTACT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.