Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004297

Physical Location & Seq

Genomic Coordinates Forward (+)

18129452 .. 18131592

Gene Structure 2141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G48890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGTTCAGCAAATATGGGAGACGTTGAAGGAAACAATCACAGCTTACACTGGACTTTCTCCAGCTGCGTTTTTCACCGTACTTGCTCTCGCTTTCGCCGTTTACCAAGTCGTCTCCGGTTTCTTCGTTTCTCCTGAAGTTCACCGACCTCGTTCTTTGGAGGTTCAGCCTCAATCGGAGCCTCTTCCACCGCCGGTTCAGCTCGGAGAAATCACTGAGGAGGAGCTTAAGCTTTATGATGGCTCCGATTCTAAAAAGCCCCTTCTTATGGCGATCAAGGGCCAGATCTATGATGTTTCTCAGAGCAGGATGTTTTATGGACCAGGTGGGCCATATGCTCTGTTTGCAGGGAAAGATGCAAGCCGAGCTCTGGCAAAGATGTCATTTGAGGACCAAGACTTGACTGGAGACATCTCAGGTCTCGGTGCATTTGAGCTAGAGGCGTTACAAGACTGGGAGTACAAGTTCATGAGCAAGTATGTCAAAGTCGGAACCATTCAAAAGAAGGATGGAGAAGGCAAAGAAAGTTCAGAACCTTCCGAAGCAAAGACTGCCTCTGCGGAAGGTCTTTCTACAAACACTGGAGAAGAAGCTTCAGCAATTACCCATGATGAAACTTCTAGAAGCACAGGCGAGAAAATCGCGGAAACCACGGAGAAGAAAGATGTTGCAACTGATGATGATGATGCTGCAAAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0008150 GO:0008289 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0030308 GO:0031976 GO:0031984 GO:0034357 GO:0040008 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0046906 GO:0048037 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0055035 GO:0065007 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

233

Amino Acids

25.38

Weight (kDa)

4.56

Isoelectric Point (pI)

51.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyt-b5	PF00173	72 - 165	9.2e-12	Cytochrome b5-like Heme/Steroid binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48890
fragaria_vesca	FvH4_1g29440
malus_domestica	MD12G1015300.v1.1
prunus_persica	Prupe.7G025200_v2.0.a1 Prupe.7G025200_v2.0.a1 Prupe.7G025200_v2.0.a1
pyrus_communis	pycom14g01130
rosa_chinensis	RchiOBHm_Chr3g0495341
rosa_laevigata	RLG00000022628
rosa_multiflora	Rmu_sc0002490.1_g000021 Rmu_sc0003395.1_g000008 Rmu_sc0010754.1_g000014 Rmu_sc0026212.1_g000002 Rmu_ssc0000243.1_g000006
rosa_roxburghii	Rroxscaffold_6G00390610
rosa_rugosa	Rorug01G0121500 Rorug02G0355300 Rorug03G0272700 Rorug05G0050400 Rorug05G0483400
rosa_samantha	Rh2AG394300 Rh2AG414100 Rh2CG381000 Rh2CG400500 Rh2DG433900 Rh3AG320800 Rh3BG355800 Rh3CG352700 Rh3DG354900 Rh3DG355000 Rh4BG244800
rosa_wichuraiana	Rw3G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	644
AciI	CCGC	3 cut(s)	191, 560, 644
AcuI	CTGAAG	2 cut(s)	156, 579
AfaI	GTAC	2 cut(s)	81, 461
AfiI	CCNNNNNNNGG	2 cut(s)	268, 370
AflII	CTTAAG	1 cut(s)	227
AgsI	TTSAA	2 cut(s)	28, 500
AjnI	CCWGG	1 cut(s)	322
AloI	GAACNNNNNNTCC	2 cut(s)	449, 481
AluBI	AGCT	8 cut(s)	44, 65, 202, 226, 232, 368, 436, 593
AluI	AGCT	8 cut(s)	44, 65, 202, 226, 232, 368, 436, 593
Alw21I	GWGCWC	1 cut(s)	370
Alw26I	GTCTC	4 cut(s)	14, 118, 402, 425
AoxI	GGCC	2 cut(s)	280, 329
ApeKI	GCWGC	2 cut(s)	65, 689
AspS9I	GGNCC	4 cut(s)	280, 320, 329, 391
AsuHPI	GGTGA	2 cut(s)	67, 134
AvaII	GGWCC	2 cut(s)	320, 391
BanII	GRGCYC	1 cut(s)	370
Bbv12I	GWGCWC	1 cut(s)	370
BbvI	GCAGC	2 cut(s)	52, 676
BccI	CCATC	2 cut(s)	233, 503
BceAI	ACGGC	1 cut(s)	83
BciT130I	CCWGG	1 cut(s)	324
BcoDI	GTCTC	4 cut(s)	14, 118, 402, 425
BfaI	CTAG	2 cut(s)	437, 621
BfrI	CTTAAG	1 cut(s)	227
BglII	AGATCT	1 cut(s)	285
BisI	GCNGC	2 cut(s)	66, 690
BlsI	GCNGC	2 cut(s)	67, 691
Bme1390I	CCNGG	1 cut(s)	324
Bme18I	GGWCC	2 cut(s)	320, 391
BmgT120I	GGNCC	4 cut(s)	280, 320, 329, 391
BmiI	GGNNCC	3 cut(s)	180, 244, 493
BmrFI	CCNGG	1 cut(s)	324
BmrI	ACTGGG	1 cut(s)	463
BmsI	GCATC	2 cut(s)	346, 676
BmuI	ACTGGG	1 cut(s)	463
BpmI	CTGGAG	3 cut(s)	45, 426, 603
BsaI	GGTCTC	1 cut(s)	425
BsaJI	CCNNGG	1 cut(s)	651
BsaWI	WCCGGW	1 cut(s)	116
BsaXI	ACNNNNNCTCC	2 cut(s)	449, 479
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 370
Bse118I	RCCGGY	1 cut(s)	193
Bse1I	ACTGG	4 cut(s)	55, 409, 458, 586
BseBI	CCWGG	1 cut(s)	324
BseDI	CCNNGG	1 cut(s)	651
BseGI	GGATG	2 cut(s)	315, 514
BseLI	CCNNNNNNNGG	2 cut(s)	268, 370
BseMII	CTCAG	3 cut(s)	207, 314, 429
BseNI	ACTGG	4 cut(s)	55, 409, 458, 586
BseRI	GAGGAG	2 cut(s)	233, 236
BseXI	GCAGC	2 cut(s)	52, 676
Bsh1236I	CGCG	1 cut(s)	644
BshFI	GGCC	2 cut(s)	282, 331
BsiHKAI	GWGCWC	1 cut(s)	370
BsiSI	CCGG	2 cut(s)	117, 194
BslI	CCNNNNNNNGG	2 cut(s)	268, 370
BsmAI	GTCTC	4 cut(s)	14, 118, 402, 425
BsmBI	CGTCTC	2 cut(s)	14, 118
BsnI	GGCC	2 cut(s)	282, 331
Bso31I	GGTCTC	1 cut(s)	425
Bsp1286I	GDGCHC	1 cut(s)	370
Bsp143I	GATC	2 cut(s)	273, 285
BspACI	CCGC	3 cut(s)	191, 560, 644
BspANI	GGCC	2 cut(s)	282, 331
BspCNI	CTCAG	3 cut(s)	208, 313, 428
BspFNI	CGCG	1 cut(s)	644
BspHI	TCATGA	1 cut(s)	468
BspLI	GGNNCC	3 cut(s)	180, 244, 493
BspTI	CTTAAG	1 cut(s)	227
BspTNI	GGTCTC	1 cut(s)	425
BsrFI	RCCGGY	1 cut(s)	193
BsrI	ACTGG	4 cut(s)	55, 409, 458, 586
BssAI	RCCGGY	1 cut(s)	193
BssECI	CCNNGG	1 cut(s)	651
BssMI	GATC	2 cut(s)	273, 285
Bst2UI	CCWGG	1 cut(s)	324
Bst4CI	ACNGT	1 cut(s)	79
Bst6I	CTCTTC	1 cut(s)	189
BstAFI	CTTAAG	1 cut(s)	227
BstAPI	GCANNNNNTGC	1 cut(s)	551
BstC8I	GCNNGC	1 cut(s)	361
BstDEI	CTNAG	3 cut(s)	216, 300, 415
BstDSI	CCRYGG	1 cut(s)	651
BstF5I	GGATG	2 cut(s)	315, 514
BstFNI	CGCG	1 cut(s)	644
BstKTI	GATC	2 cut(s)	276, 288
BstMAI	GTCTC	4 cut(s)	14, 118, 402, 425
BstMBI	GATC	2 cut(s)	273, 285
BstMWI	GCNNNNNNNGC	4 cut(s)	199, 344, 365, 551
BstNI	CCWGG	1 cut(s)	324
BstSCI	CCNGG	1 cut(s)	322
BstUI	CGCG	1 cut(s)	644
BstV1I	GCAGC	2 cut(s)	52, 676
BstX2I	RGATCY	1 cut(s)	285
BstYI	RGATCY	1 cut(s)	285
BsuRI	GGCC	2 cut(s)	282, 331
BtgI	CCRYGG	1 cut(s)	651
BtsCI	GGATG	2 cut(s)	315, 514
BtsIMutI	CAGTG	3 cut(s)	48, 213, 579
Cac8I	GCNNGC	1 cut(s)	361
CciI	TCATGA	1 cut(s)	468
Cfr10I	RCCGGY	1 cut(s)	193
Cfr13I	GGNCC	4 cut(s)	280, 320, 329, 391
CsiI	ACCWGGT	1 cut(s)	322
Csp6I	GTAC	2 cut(s)	80, 460
CviAII	CATG	2 cut(s)	469, 608
CviQI	GTAC	2 cut(s)	80, 460
DdeI	CTNAG	3 cut(s)	216, 300, 415
DpnI	GATC	2 cut(s)	275, 287
DpnII	GATC	2 cut(s)	273, 285
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Ecl136II	GAGCTC	1 cut(s)	368
Eco24I	GRGCYC	1 cut(s)	370
Eco31I	GGTCTC	1 cut(s)	425
Eco47I	GGWCC	2 cut(s)	320, 391
Eco53kI	GAGCTC	1 cut(s)	368
Eco57I	CTGAAG	2 cut(s)	156, 579
EcoICRI	GAGCTC	1 cut(s)	368
EcoRII	CCWGG	1 cut(s)	322
EcoT38I	GRGCYC	1 cut(s)	370
Esp3I	CGTCTC	2 cut(s)	14, 118
FaeI	CATG	2 cut(s)	472, 611
FatI	CATG	2 cut(s)	468, 607
FauNDI	CATATG	1 cut(s)	334
Fnu4HI	GCNGC	2 cut(s)	66, 690
FokI	GGATG	2 cut(s)	322, 521
FriOI	GRGCYC	1 cut(s)	370
Fsp4HI	GCNGC	2 cut(s)	66, 690
FspBI	CTAG	2 cut(s)	437, 621
GluI	GCNGC	2 cut(s)	66, 690
GsuI	CTGGAG	3 cut(s)	45, 426, 603
HaeIII	GGCC	2 cut(s)	282, 331
HapII	CCGG	2 cut(s)	117, 194
Hin1II	CATG	2 cut(s)	472, 611
HindIII	AAGCTT	2 cut(s)	230, 591
HinfI	GANTC	1 cut(s)	248
HpaII	CCGG	2 cut(s)	117, 194
HphI	GGTGA	2 cut(s)	67, 134
Hpy166II	GTNNAC	2 cut(s)	103, 142
Hpy188I	TCNGA	7 cut(s)	178, 206, 247, 303, 491, 532, 541
Hpy188III	TCNNGA	3 cut(s)	134, 469, 621
Hpy8I	GTNNAC	2 cut(s)	103, 142
HpyAV	CCTTC	6 cut(s)	22, 272, 499, 509, 546, 557
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	5 cut(s)	347, 359, 428, 671, 692
HpyF10VI	GCNNNNNNNGC	4 cut(s)	199, 344, 365, 551
HpyF3I	CTNAG	3 cut(s)	216, 300, 415
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	2 cut(s)	472, 611
Kzo9I	GATC	2 cut(s)	273, 285
LmnI	GCTCC	3 cut(s)	178, 223, 248
Lsp1109I	GCAGC	2 cut(s)	52, 676
LweI	GCATC	2 cut(s)	346, 676
MabI	ACCWGGT	1 cut(s)	322
MaeI	CTAG	2 cut(s)	437, 621
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	1 cut(s)	444
MalI	GATC	2 cut(s)	275, 287
MboI	GATC	2 cut(s)	273, 285
MboII	GAAGA	4 cut(s)	115, 176, 599, 670
MflI	RGATCY	1 cut(s)	285
MhlI	GDGCHC	1 cut(s)	370
MluCI	AATT	1 cut(s)	600
MmeI	TCCRAC	1 cut(s)	469
MnlI	CCTC	9 cut(s)	154, 159, 180, 192, 211, 214, 382, 433, 565
MseI	TTAA	1 cut(s)	228
MspA1I	CMGCKG	1 cut(s)	65
MspCI	CTTAAG	1 cut(s)	227
MspI	CCGG	2 cut(s)	117, 194
MspR9I	CCNGG	1 cut(s)	324
MvaI	CCWGG	1 cut(s)	324
MvnI	CGCG	1 cut(s)	644
MwoI	GCNNNNNNNGC	4 cut(s)	199, 344, 365, 551
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	2 cut(s)	273, 285
NlaIII	CATG	2 cut(s)	472, 611
NlaIV	GGNNCC	3 cut(s)	180, 244, 493
NmeAIII	GCCGAG	1 cut(s)	389
PagI	TCATGA	1 cut(s)	468
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	248
PkrI	GCNGC	2 cut(s)	67, 691
Psp124BI	GAGCTC	1 cut(s)	370
Psp6I	CCWGG	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	322
PspN4I	GGNNCC	3 cut(s)	180, 244, 493
PspPI	GGNCC	4 cut(s)	280, 320, 329, 391
PsuI	RGATCY	1 cut(s)	285
PvuII	CAGCTG	1 cut(s)	65
RsaI	GTAC	2 cut(s)	81, 461
RsaNI	GTAC	2 cut(s)	80, 460
SacI	GAGCTC	1 cut(s)	370
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	2 cut(s)	66, 690
Sau3AI	GATC	2 cut(s)	273, 285
Sau96I	GGNCC	4 cut(s)	280, 320, 329, 391
ScrFI	CCNGG	1 cut(s)	324
SduI	GDGCHC	1 cut(s)	370
SexAI	ACCWGGT	1 cut(s)	322
SfaNI	GCATC	2 cut(s)	346, 676
SinI	GGWCC	2 cut(s)	320, 391
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	1 cut(s)	600
SsiI	CCGC	3 cut(s)	191, 560, 644
SspMI	CTAG	2 cut(s)	437, 621
SstI	GAGCTC	1 cut(s)	370
StyD4I	CCNGG	1 cut(s)	322
TaaI	ACNGT	1 cut(s)	79
TaiI	ACGT	1 cut(s)	26
TasI	AATT	1 cut(s)	600
TatI	WGTACW	1 cut(s)	459
TfiI	GAWTC	1 cut(s)	248
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	3 cut(s)	55, 220, 586
TseI	GCWGC	2 cut(s)	65, 689
TspDTI	ATGAA	2 cut(s)	457, 627
TspGWI	ACGGA	1 cut(s)	668
TspRI	CASTG	3 cut(s)	55, 220, 586
Vha464I	CTTAAG	1 cut(s)	227
VpaK11BI	GGWCC	2 cut(s)	320, 391
XbaI	TCTAGA	1 cut(s)	620
XcmI	CCANNNNNNNNNTGG	1 cut(s)	401
XspI	CTAG	2 cut(s)	437, 621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.