Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0004297

Physical Location & Seq

Genomic Coordinates Reverse (-)

42256427 .. 42257009

Gene Structure 583 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG355800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGATGGTCGTCGTTTACAGATATGTTACCGGAATGTTTGTGGCTCCCGAAGATTACAACAAGCCTCCGGTGGTGAGTAGTGCTAATTCGGAATTGGCGAACAAGTATTTCAATCCCACGACCGCCACGACACCAAGCTCAATCCAAGTCGGGGATATGACGGAGCAAGAGCTTAGAGGATATGATGGGTCTGACCCCAATAAGCCCCTTCTCATGGCCATCAAAGCTCAGATCTACGACGTCTCCTCCTCCAGGAACTTCTATGGTCCAGGTGGACCGTATGCAATGTTTGCTGGAAGGGATGCTAGCAGAGCCTTGGCTCTTCTGTCTTTCAAACCCCAAGACATAAACGGAAACATCGATGGCCTCGGTCCCGACGAGCTTCAGATTTTACAGGACTGGGAAGATAAATTCGTTGAAAAATATCTCAAGGTTGGACGGCTGCTTAACCGTGATCCTGTGCCACAACCAACACAAGAGACGTCTAAGCAAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

165

Amino Acids

18.3

Weight (kDa)

4.84

Isoelectric Point (pI)

48.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyt-b5	PF00173	54 - 147	1.1e-09	Cytochrome b5-like Heme/Steroid binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48890
fragaria_vesca	FvH4_1g29440
malus_domestica	MD12G1015300.v1.1
prunus_persica	Prupe.7G025200_v2.0.a1 Prupe.7G025200_v2.0.a1 Prupe.7G025200_v2.0.a1
pyrus_communis	pycom14g01130
rosa_chinensis	RchiOBHm_Chr3g0495341
rosa_laevigata	RLG00000022628
rosa_multiflora	Rmu_sc0002490.1_g000021 Rmu_sc0003395.1_g000008 Rmu_sc0010754.1_g000014 Rmu_sc0026212.1_g000002 Rmu_ssc0000243.1_g000006
rosa_roxburghii	Rroxscaffold_6G00390610
rosa_rugosa	Rorug01G0121500 Rorug02G0355300 Rorug03G0272700 Rorug05G0050400 Rorug05G0483400
rosa_samantha	Rh2AG394300 Rh2AG414100 Rh2CG381000 Rh2CG400500 Rh2DG433900 Rh3AG320800 Rh3BG355800 Rh3CG352700 Rh3DG354900 Rh3DG355000 Rh4BG244800
rosa_wichuraiana	Rw3G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	243, 485
AciI	CCGC	1 cut(s)	123
AclWI	GGATC	1 cut(s)	449
AcoI	YGGCCR	1 cut(s)	216
AcsI	RAATTY	1 cut(s)	410
AcuI	CTGAAG	1 cut(s)	368
AcyI	GRCGYC	2 cut(s)	240, 482
AfiI	CCNNNNNNNGG	3 cut(s)	151, 214, 252
AgsI	TTSAA	3 cut(s)	112, 334, 419
AjnI	CCWGG	2 cut(s)	251, 268
AluBI	AGCT	4 cut(s)	138, 172, 227, 382
AluI	AGCT	4 cut(s)	138, 172, 227, 382
Alw26I	GTCTC	2 cut(s)	247, 473
AlwI	GGATC	1 cut(s)	449
AoxI	GGCC	2 cut(s)	216, 364
ApeKI	GCWGC	1 cut(s)	442
ApoI	RAATTY	1 cut(s)	410
AspS9I	GGNCC	3 cut(s)	266, 275, 371
AsuHPI	GGTGA	1 cut(s)	85
AsuNHI	GCTAGC	1 cut(s)	305
AvaII	GGWCC	3 cut(s)	266, 275, 371
BalI	TGGCCA	1 cut(s)	218
BbvI	GCAGC	1 cut(s)	429
BccI	CCATC	3 cut(s)	179, 227, 356
BceAI	ACGGC	1 cut(s)	455
BciT130I	CCWGG	2 cut(s)	253, 270
BcoDI	GTCTC	2 cut(s)	247, 473
BfaI	CTAG	1 cut(s)	306
BglII	AGATCT	1 cut(s)	231
BisI	GCNGC	1 cut(s)	443
BlsI	GCNGC	1 cut(s)	444
Bme1390I	CCNGG	2 cut(s)	253, 270
Bme18I	GGWCC	3 cut(s)	266, 275, 371
BmgT120I	GGNCC	3 cut(s)	266, 275, 371
BmiI	GGNNCC	2 cut(s)	45, 373
BmrFI	CCNGG	2 cut(s)	253, 270
BmrI	ACTGGG	1 cut(s)	409
BmsI	GCATC	1 cut(s)	292
BmtI	GCTAGC	1 cut(s)	309
BmuI	ACTGGG	1 cut(s)	409
BpmI	CTGGAG	1 cut(s)	235
BpuEI	CTTGAG	1 cut(s)	413
Bsa29I	ATCGAT	1 cut(s)	360
BsaHI	GRCGYC	2 cut(s)	240, 482
BsaJI	CCNNGG	2 cut(s)	315, 367
BsaWI	WCCGGW	2 cut(s)	29, 67
BsaXI	ACNNNNNCTCC	4 cut(s)	227, 230, 257, 260
Bsc4I	CCNNNNNNNGG	3 cut(s)	151, 214, 252
Bse1I	ACTGG	1 cut(s)	404
Bse3DI	GCAATG	1 cut(s)	291
BseBI	CCWGG	2 cut(s)	253, 270
BseCI	ATCGAT	1 cut(s)	360
BseDI	CCNNGG	2 cut(s)	315, 367
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	3 cut(s)	151, 214, 252
BseMI	GCAATG	1 cut(s)	291
BseMII	CTCAG	1 cut(s)	242
BseNI	ACTGG	1 cut(s)	404
BseRI	GAGGAG	2 cut(s)	235, 238
BseXI	GCAGC	1 cut(s)	429
Bsh1285I	CGRYCG	1 cut(s)	123
BshFI	GGCC	2 cut(s)	218, 366
BshVI	ATCGAT	1 cut(s)	360
BsiEI	CGRYCG	1 cut(s)	123
BsiSI	CCGG	2 cut(s)	30, 68
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	3 cut(s)	151, 214, 252
BsmAI	GTCTC	2 cut(s)	247, 473
BsmBI	CGTCTC	2 cut(s)	247, 473
BsmFI	GGGAC	1 cut(s)	357
BsnI	GGCC	2 cut(s)	218, 366
Bsp143I	GATC	2 cut(s)	231, 454
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	2 cut(s)	218, 366
BspCNI	CTCAG	1 cut(s)	241
BspDI	ATCGAT	1 cut(s)	360
BspLI	GGNNCC	2 cut(s)	45, 373
BspOI	GCTAGC	1 cut(s)	309
BspPI	GGATC	1 cut(s)	449
BspQI	GCTCTTC	1 cut(s)	327
BsrDI	GCAATG	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	404
BssECI	CCNNGG	2 cut(s)	315, 367
BssMI	GATC	2 cut(s)	231, 454
BssNI	GRCGYC	2 cut(s)	240, 482
BssT1I	CCWWGG	1 cut(s)	315
Bst2UI	CCWGG	2 cut(s)	253, 270
Bst4CI	ACNGT	2 cut(s)	279, 452
Bst6I	CTCTTC	1 cut(s)	327
BstACI	GRCGYC	2 cut(s)	240, 482
BstAPI	GCANNNNNTGC	1 cut(s)	290
BstC8I	GCNNGC	1 cut(s)	307
BstDEI	CTNAG	3 cut(s)	173, 228, 486
BstENI	CCTNNNNNAGG	1 cut(s)	250
BstF5I	GGATG	1 cut(s)	307
BstKTI	GATC	2 cut(s)	234, 457
BstMAI	GTCTC	2 cut(s)	247, 473
BstMBI	GATC	2 cut(s)	231, 454
BstMCI	CGRYCG	1 cut(s)	123
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 290, 311
BstNI	CCWGG	2 cut(s)	253, 270
BstSCI	CCNGG	2 cut(s)	251, 268
BstV1I	GCAGC	1 cut(s)	429
BstX2I	RGATCY	1 cut(s)	231
BstYI	RGATCY	1 cut(s)	231
Bsu15I	ATCGAT	1 cut(s)	360
BsuRI	GGCC	2 cut(s)	218, 366
BsuTUI	ATCGAT	1 cut(s)	360
BtsCI	GGATG	1 cut(s)	307
Cac8I	GCNNGC	1 cut(s)	307
Cfr13I	GGNCC	3 cut(s)	266, 275, 371
ClaI	ATCGAT	1 cut(s)	360
CviAII	CATG	1 cut(s)	214
DdeI	CTNAG	3 cut(s)	173, 228, 486
DpnI	GATC	2 cut(s)	233, 456
DpnII	GATC	2 cut(s)	231, 454
EaeI	YGGCCR	1 cut(s)	216
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco130I	CCWWGG	1 cut(s)	315
Eco47I	GGWCC	3 cut(s)	266, 275, 371
Eco57I	CTGAAG	1 cut(s)	368
EcoNI	CCTNNNNNAGG	1 cut(s)	250
EcoRII	CCWGG	2 cut(s)	251, 268
EcoT14I	CCWWGG	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	315
Esp3I	CGTCTC	2 cut(s)	247, 473
FaeI	CATG	1 cut(s)	217
FaiI	YATR	7 cut(s)	24, 158, 183, 215, 264, 282, 347
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	1 cut(s)	213
Fnu4HI	GCNGC	1 cut(s)	443
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	1 cut(s)	443
FspBI	CTAG	1 cut(s)	306
GluI	GCNGC	1 cut(s)	443
GsuI	CTGGAG	1 cut(s)	235
HaeIII	GGCC	2 cut(s)	218, 366
HapII	CCGG	2 cut(s)	30, 68
Hin1I	GRCGYC	2 cut(s)	240, 482
Hin1II	CATG	1 cut(s)	217
HpaII	CCGG	2 cut(s)	30, 68
HphI	GGTGA	1 cut(s)	85
Hpy166II	GTNNAC	2 cut(s)	16, 275
Hpy188I	TCNGA	4 cut(s)	91, 193, 231, 387
Hpy188III	TCNNGA	2 cut(s)	47, 374
Hpy8I	GTNNAC	2 cut(s)	16, 275
Hpy99I	CGWCG	3 cut(s)	14, 242, 380
HpyAV	CCTTC	2 cut(s)	218, 291
HpyCH4III	ACNGT	2 cut(s)	279, 452
HpyCH4IV	ACGT	2 cut(s)	240, 482
HpyCH4V	TGCA	1 cut(s)	284
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 290, 311
HpyF3I	CTNAG	3 cut(s)	173, 228, 486
HpySE526I	ACGT	2 cut(s)	240, 482
Hsp92I	GRCGYC	2 cut(s)	240, 482
Hsp92II	CATG	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	231, 454
LguI	GCTCTTC	1 cut(s)	327
LmnI	GCTCC	2 cut(s)	49, 163
Lsp1109I	GCAGC	1 cut(s)	429
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	1 cut(s)	306
MaeII	ACGT	2 cut(s)	240, 482
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	2 cut(s)	233, 456
MboI	GATC	2 cut(s)	231, 454
MboII	GAAGA	3 cut(s)	62, 314, 416
MflI	RGATCY	1 cut(s)	231
MlsI	TGGCCA	1 cut(s)	218
MluCI	AATT	3 cut(s)	85, 92, 410
MluNI	TGGCCA	1 cut(s)	218
MmeI	TCCRAC	1 cut(s)	415
MnlI	CCTC	5 cut(s)	75, 170, 256, 259, 377
Mox20I	TGGCCA	1 cut(s)	218
MscI	TGGCCA	1 cut(s)	218
MseI	TTAA	1 cut(s)	447
Msp20I	TGGCCA	1 cut(s)	218
MspI	CCGG	2 cut(s)	30, 68
MspR9I	CCNGG	2 cut(s)	253, 270
MvaI	CCWGG	2 cut(s)	253, 270
MwoI	GCNNNNNNNGC	3 cut(s)	224, 290, 311
NdeII	GATC	2 cut(s)	231, 454
NheI	GCTAGC	1 cut(s)	305
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	2 cut(s)	45, 373
PciSI	GCTCTTC	1 cut(s)	327
PcsI	WCGNNNNNNNCGW	4 cut(s)	95, 125, 357, 375
PfoI	TCCNGGA	1 cut(s)	251
PkrI	GCNGC	1 cut(s)	444
Psp6I	CCWGG	2 cut(s)	251, 268
PspGI	CCWGG	2 cut(s)	251, 268
PspN4I	GGNNCC	2 cut(s)	45, 373
PspPI	GGNCC	3 cut(s)	266, 275, 371
PsuI	RGATCY	1 cut(s)	231
SapI	GCTCTTC	1 cut(s)	327
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	1 cut(s)	443
Sau3AI	GATC	2 cut(s)	231, 454
Sau96I	GGNCC	3 cut(s)	266, 275, 371
ScrFI	CCNGG	2 cut(s)	253, 270
SetI	ASST	9 cut(s)	140, 174, 229, 243, 274, 384, 435, 485, 497
SfaNI	GCATC	1 cut(s)	292
SinI	GGWCC	3 cut(s)	266, 275, 371
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	3 cut(s)	85, 92, 410
SsiI	CCGC	1 cut(s)	123
SspMI	CTAG	1 cut(s)	306
StyD4I	CCNGG	2 cut(s)	251, 268
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	2 cut(s)	279, 452
TaiI	ACGT	2 cut(s)	243, 485
TaqI	TCGA	1 cut(s)	360
TaqII	GACCGA	1 cut(s)	359
TasI	AATT	3 cut(s)	85, 92, 410
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TseI	GCWGC	1 cut(s)	442
TspGWI	ACGGA	2 cut(s)	176, 366
VpaK11BI	GGWCC	3 cut(s)	266, 275, 371
XagI	CCTNNNNNAGG	1 cut(s)	250
XapI	RAATTY	1 cut(s)	410
XspI	CTAG	1 cut(s)	306
ZraI	GACGTC	2 cut(s)	241, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.