Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010754.1

Orthogroup ID

OG0004297

Physical Location & Seq

Genomic Coordinates Forward (+)

38993 .. 43006

Gene Structure 4014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010754.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atggtgatggaggagataacagtgtacatggggctatcaccagcgatgtttttcacaatcgctaggatggtggtcgtcgtttacagatatgttaccacaatgtttatggctctcgaagattacaacaatcctccggtggtgagtagtgctaattcagaattggtgaacaagtatttcaatcccaagattgccacgacgccaagctcaatccaagtcgaggatatgacggagcaagagcttagaggatataatgggtctgaccccaataagccccttcttatggtcatcaaagctcatatctacaacgtgttcatatgccctgtttacattttggggcacaaccaaagaaccttactggaaaagatgtcatcgaaagctagagacttcgccggaggagcaaagctaaactaccatgcaggatcgccgccccacgtcgcagcaaagggagacctctgtcgctccacatccgttgcaccgccagaccagatcgcccaccactcgccgcttgccaaccacgatcctacaactccatcgtctctgcactccctcgctgccagcggagagactcaggaggaacccgatcacgcacctctacctccccattctccaaccaccctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

206

Amino Acids

22.59

Weight (kDa)

6.03

Isoelectric Point (pI)

52.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48890
fragaria_vesca	FvH4_1g29440
malus_domestica	MD12G1015300.v1.1
prunus_persica	Prupe.7G025200_v2.0.a1 Prupe.7G025200_v2.0.a1 Prupe.7G025200_v2.0.a1
pyrus_communis	pycom14g01130
rosa_chinensis	RchiOBHm_Chr3g0495341
rosa_laevigata	RLG00000022628
rosa_multiflora	Rmu_sc0002490.1_g000021 Rmu_sc0003395.1_g000008 Rmu_sc0010754.1_g000014 Rmu_sc0026212.1_g000002 Rmu_ssc0000243.1_g000006
rosa_roxburghii	Rroxscaffold_6G00390610
rosa_rugosa	Rorug01G0121500 Rorug02G0355300 Rorug03G0272700 Rorug05G0050400 Rorug05G0483400
rosa_samantha	Rh2AG394300 Rh2AG414100 Rh2CG381000 Rh2CG400500 Rh2DG433900 Rh3AG320800 Rh3BG355800 Rh3CG352700 Rh3DG354900 Rh3DG355000 Rh4BG244800
rosa_wichuraiana	Rw3G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	425, 476, 503, 558
AclWI	GGATC	2 cut(s)	427, 512
AcyI	GRCGYC	1 cut(s)	197
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	2 cut(s)	217, 280
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	1 cut(s)	178
AjiI	CACGTC	1 cut(s)	433
AluBI	AGCT	5 cut(s)	204, 238, 293, 377, 403
AluI	AGCT	5 cut(s)	204, 238, 293, 377, 403
Alw26I	GTCTC	4 cut(s)	375, 441, 540, 557
AlwI	GGATC	2 cut(s)	427, 512
ApeKI	GCWGC	2 cut(s)	437, 551
AsuHPI	GGTGA	4 cut(s)	16, 30, 151, 175
BaeGI	GKGCMC	1 cut(s)	339
BbvI	GCAGC	2 cut(s)	449, 538
BccI	CCATC	2 cut(s)	61, 538
BcoDI	GTCTC	4 cut(s)	375, 441, 540, 557
BfaI	CTAG	2 cut(s)	63, 378
BisI	GCNGC	4 cut(s)	425, 438, 503, 552
BlsI	GCNGC	4 cut(s)	426, 439, 504, 553
BmgBI	CACGTC	1 cut(s)	433
BmiI	GGNNCC	1 cut(s)	576
BoxI	GACNNNNGTC	1 cut(s)	453
BsaHI	GRCGYC	1 cut(s)	197
BsaI	GGTCTC	1 cut(s)	441
BsaWI	WCCGGW	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 280
Bse1I	ACTGG	1 cut(s)	360
BseGI	GGATG	2 cut(s)	72, 464
BseLI	CCNNNNNNNGG	2 cut(s)	217, 280
BseMII	CTCAG	1 cut(s)	581
BseNI	ACTGG	1 cut(s)	360
BseRI	GAGGAG	2 cut(s)	26, 408
BseSI	GKGCMC	1 cut(s)	339
BseXI	GCAGC	2 cut(s)	449, 538
BsgI	GTGCAG	1 cut(s)	524
BsiSI	CCGG	2 cut(s)	134, 390
BslI	CCNNNNNNNGG	2 cut(s)	217, 280
BsmAI	GTCTC	4 cut(s)	375, 441, 540, 557
BsmBI	CGTCTC	1 cut(s)	540
Bso31I	GGTCTC	1 cut(s)	441
Bsp1286I	GDGCHC	1 cut(s)	339
Bsp1407I	TGTACA	1 cut(s)	24
Bsp143I	GATC	4 cut(s)	419, 486, 517, 580
BspACI	CCGC	4 cut(s)	425, 476, 503, 558
BspCNI	CTCAG	1 cut(s)	580
BspLI	GGNNCC	1 cut(s)	576
BspPI	GGATC	2 cut(s)	427, 512
BspTNI	GGTCTC	1 cut(s)	441
BsrGI	TGTACA	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	360
BssMI	GATC	4 cut(s)	419, 486, 517, 580
BssNI	GRCGYC	1 cut(s)	197
Bst4CI	ACNGT	1 cut(s)	22
BstACI	GRCGYC	1 cut(s)	197
BstAUI	TGTACA	1 cut(s)	24
BstC8I	GCNNGC	2 cut(s)	507, 556
BstDEI	CTNAG	2 cut(s)	239, 567
BstF5I	GGATG	2 cut(s)	72, 464
BstKTI	GATC	4 cut(s)	422, 489, 520, 583
BstMAI	GTCTC	4 cut(s)	375, 441, 540, 557
BstMBI	GATC	4 cut(s)	419, 486, 517, 580
BstMWI	GCNNNNNNNGC	1 cut(s)	395
BstPAI	GACNNNNGTC	1 cut(s)	453
BstSLI	GKGCMC	1 cut(s)	339
BstV1I	GCAGC	2 cut(s)	449, 538
BtgZI	GCGATG	1 cut(s)	59
BtrI	CACGTC	1 cut(s)	433
BtsCI	GGATG	2 cut(s)	72, 464
BtsIMutI	CAGTG	1 cut(s)	27
Cac8I	GCNNGC	2 cut(s)	507, 556
CseI	GACGC	1 cut(s)	205
Csp6I	GTAC	1 cut(s)	25
CspCI	CAANNNNNGTGG	2 cut(s)	451, 486
CviAII	CATG	2 cut(s)	28, 413
CviJI	RGCY	8 cut(s)	34, 110, 204, 238, 271, 293, 377, 403
CviKI_1	RGCY	8 cut(s)	34, 110, 204, 238, 271, 293, 377, 403
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	2 cut(s)	239, 567
DpnI	GATC	4 cut(s)	421, 488, 519, 582
DpnII	GATC	4 cut(s)	419, 486, 517, 580
Eco31I	GGTCTC	1 cut(s)	441
Esp3I	CGTCTC	1 cut(s)	540
FaeI	CATG	2 cut(s)	31, 416
FatI	CATG	2 cut(s)	27, 412
FauNDI	CATATG	1 cut(s)	314
Fnu4HI	GCNGC	4 cut(s)	425, 438, 503, 552
FokI	GGATG	2 cut(s)	79, 451
Fsp4HI	GCNGC	4 cut(s)	425, 438, 503, 552
FspBI	CTAG	2 cut(s)	63, 378
GluI	GCNGC	4 cut(s)	425, 438, 503, 552
HapII	CCGG	2 cut(s)	134, 390
HgaI	GACGC	1 cut(s)	205
Hin1I	GRCGYC	1 cut(s)	197
Hin1II	CATG	2 cut(s)	31, 416
HinfI	GANTC	1 cut(s)	565
HpaII	CCGG	2 cut(s)	134, 390
HphI	GGTGA	4 cut(s)	16, 30, 151, 175
Hpy166II	GTNNAC	4 cut(s)	25, 82, 166, 325
Hpy188I	TCNGA	3 cut(s)	157, 259, 620
Hpy188III	TCNNGA	2 cut(s)	113, 569
Hpy8I	GTNNAC	4 cut(s)	25, 82, 166, 325
Hpy99I	CGWCG	3 cut(s)	80, 199, 437
HpyAV	CCTTC	1 cut(s)	284
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4IV	ACGT	2 cut(s)	306, 432
HpyCH4V	TGCA	3 cut(s)	416, 473, 541
HpyF10VI	GCNNNNNNNGC	1 cut(s)	395
HpyF3I	CTNAG	2 cut(s)	239, 567
HpySE526I	ACGT	2 cut(s)	306, 432
Hsp92I	GRCGYC	1 cut(s)	197
Hsp92II	CATG	2 cut(s)	31, 416
Kzo9I	GATC	4 cut(s)	419, 486, 517, 580
LmnI	GCTCC	3 cut(s)	229, 395, 464
Lsp1109I	GCAGC	2 cut(s)	449, 538
MaeI	CTAG	2 cut(s)	63, 378
MaeII	ACGT	2 cut(s)	306, 432
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	4 cut(s)	421, 488, 519, 582
MboI	GATC	4 cut(s)	419, 486, 517, 580
MboII	GAAGA	1 cut(s)	128
MhlI	GDGCHC	1 cut(s)	339
MluCI	AATT	2 cut(s)	151, 158
MlyI	GAGTC	1 cut(s)	559
MspA1I	CMGCKG	1 cut(s)	558
MspI	CCGG	2 cut(s)	134, 390
MwoI	GCNNNNNNNGC	1 cut(s)	395
NdeI	CATATG	1 cut(s)	314
NdeII	GATC	4 cut(s)	419, 486, 517, 580
NlaIII	CATG	2 cut(s)	31, 416
NlaIV	GGNNCC	1 cut(s)	576
PkrI	GCNGC	4 cut(s)	426, 439, 504, 553
PleI	GAGTC	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	559
PshAI	GACNNNNGTC	1 cut(s)	453
PspN4I	GGNNCC	1 cut(s)	576
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
SatI	GCNGC	4 cut(s)	425, 438, 503, 552
Sau3AI	GATC	4 cut(s)	419, 486, 517, 580
SchI	GAGTC	1 cut(s)	559
SduI	GDGCHC	1 cut(s)	339
Sse9I	AATT	2 cut(s)	151, 158
SsiI	CCGC	4 cut(s)	425, 476, 503, 558
SspMI	CTAG	2 cut(s)	63, 378
TaaI	ACNGT	1 cut(s)	22
TaiI	ACGT	2 cut(s)	309, 435
TaqI	TCGA	3 cut(s)	114, 216, 371
TasI	AATT	2 cut(s)	151, 158
TatI	WGTACW	1 cut(s)	24
TauI	GCSGC	2 cut(s)	427, 505
TscAI	CASTG	1 cut(s)	27
TseI	GCWGC	2 cut(s)	437, 551
TspDTI	ATGAA	1 cut(s)	301
TspGWI	ACGGA	2 cut(s)	242, 457
TspRI	CASTG	1 cut(s)	27
XcmI	CCANNNNNNNNNTGG	1 cut(s)	103
XspI	CTAG	2 cut(s)	63, 378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.