Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0004297

Physical Location & Seq

Genomic Coordinates Forward (+)

801894 .. 802998

Gene Structure 1105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g01130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGAAGGATTGTACGGAGTAGTGATGGAGGAGATAGGGCGGTACACCGGACTATCACCGGCGGCCTTCTTCACAATCGCCGGGATGATGGTCGTGGTTTACAGAATAGTCACCGGCATGTTTGTGGGTCCCGAAGATTACAACAAGCCTCCGGTGGCGGCGACCATCGACACCGTCGATTCTGATTCCAAATCCAATTTTGTGAATAAATACTTCAATTCCTCGGGGGCGGCGAGAGGCTCGTCGGTCCAAATGGGAGACATGACGGAGGAGCAGCTGAGAGAGTACGGCGGGTCTGACCCCAATAAGCCGCTGCTTATGGCTATCAGGGCTCAGATATACGACGTGTCTTCCTCCAGGCAGGAACTTTTACGGACCAGGAGGACCGTACGCCATGTTTGCTGGAAGGGAAGCAAGCAGAGCGCTGGCTCTTCTGTCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

148

Amino Acids

16.15

Weight (kDa)

7.82

Isoelectric Point (pI)

49.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48890
fragaria_vesca	FvH4_1g29440
malus_domestica	MD12G1015300.v1.1
prunus_persica	Prupe.7G025200_v2.0.a1 Prupe.7G025200_v2.0.a1 Prupe.7G025200_v2.0.a1
pyrus_communis	pycom14g01130
rosa_chinensis	RchiOBHm_Chr3g0495341
rosa_laevigata	RLG00000022628
rosa_multiflora	Rmu_sc0002490.1_g000021 Rmu_sc0003395.1_g000008 Rmu_sc0010754.1_g000014 Rmu_sc0026212.1_g000002 Rmu_ssc0000243.1_g000006
rosa_roxburghii	Rroxscaffold_6G00390610
rosa_rugosa	Rorug01G0121500 Rorug02G0355300 Rorug03G0272700 Rorug05G0050400 Rorug05G0483400
rosa_samantha	Rh2AG394300 Rh2AG414100 Rh2CG381000 Rh2CG400500 Rh2DG433900 Rh3AG320800 Rh3BG355800 Rh3CG352700 Rh3DG354900 Rh3DG355000 Rh4BG244800
rosa_wichuraiana	Rw3G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	40, 62, 158, 230, 291, 311
AfaI	GTAC	4 cut(s)	14, 44, 287, 390
AfeI	AGCGCT	1 cut(s)	424
AflIII	ACRYGT	1 cut(s)	345
AgsI	TTSAA	1 cut(s)	217
AjiI	CACGTC	1 cut(s)	346
AjnI	CCWGG	2 cut(s)	356, 377
AluBI	AGCT	1 cut(s)	277
AluI	AGCT	1 cut(s)	277
Alw26I	GTCTC	1 cut(s)	252
Ama87I	CYCGRG	1 cut(s)	223
Aor51HI	AGCGCT	1 cut(s)	424
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	2 cut(s)	274, 313
AspLEI	GCGC	1 cut(s)	425
AspS9I	GGNCC	4 cut(s)	128, 247, 375, 384
AsuC2I	CCSGG	1 cut(s)	82
AsuHPI	GGTGA	2 cut(s)	48, 103
AvaI	CYCGRG	1 cut(s)	223
AvaII	GGWCC	4 cut(s)	128, 247, 375, 384
BanII	GRGCYC	1 cut(s)	334
BbsI	GAAGAC	1 cut(s)	342
BbvI	GCAGC	2 cut(s)	286, 300
BccI	CCATC	3 cut(s)	19, 82, 173
BceAI	ACGGC	1 cut(s)	304
BciT130I	CCWGG	2 cut(s)	358, 379
BcnI	CCSGG	1 cut(s)	82
BcoDI	GTCTC	1 cut(s)	252
BfoI	RGCGCY	1 cut(s)	426
BisI	GCNGC	6 cut(s)	63, 159, 231, 275, 311, 314
BlsI	GCNGC	6 cut(s)	64, 160, 232, 276, 312, 315
Bme1390I	CCNGG	3 cut(s)	82, 358, 379
Bme18I	GGWCC	4 cut(s)	128, 247, 375, 384
BmeT110I	CYCGRG	1 cut(s)	223
BmgBI	CACGTC	1 cut(s)	346
BmgT120I	GGNCC	4 cut(s)	128, 247, 375, 384
BmiI	GGNNCC	2 cut(s)	129, 130
BmrFI	CCNGG	3 cut(s)	82, 358, 379
BpiI	GAAGAC	1 cut(s)	342
BpmI	CTGGAG	1 cut(s)	340
BpuMI	CCSGG	1 cut(s)	82
BsaJI	CCNNGG	1 cut(s)	222
BsaWI	WCCGGW	2 cut(s)	47, 151
Bse118I	RCCGGY	2 cut(s)	58, 113
BseBI	CCWGG	2 cut(s)	358, 379
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	1 cut(s)	90
BseMII	CTCAG	2 cut(s)	269, 347
BseRI	GAGGAG	2 cut(s)	44, 284
BseXI	GCAGC	2 cut(s)	286, 300
BshFI	GGCC	1 cut(s)	65
BsiHKCI	CYCGRG	1 cut(s)	223
BsiSI	CCGG	5 cut(s)	48, 59, 81, 114, 152
BsiWI	CGTACG	1 cut(s)	388
BslFI	GGGAC	1 cut(s)	114
BsmAI	GTCTC	1 cut(s)	252
BsmFI	GGGAC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	65
BsoBI	CYCGRG	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	334
BspACI	CCGC	6 cut(s)	40, 62, 158, 230, 291, 311
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	2 cut(s)	270, 346
BspLI	GGNNCC	2 cut(s)	129, 130
BspQI	GCTCTTC	1 cut(s)	436
BsrFI	RCCGGY	2 cut(s)	58, 113
BssAI	RCCGGY	2 cut(s)	58, 113
BssECI	CCNNGG	1 cut(s)	222
Bst2UI	CCWGG	2 cut(s)	358, 379
Bst4CI	ACNGT	2 cut(s)	175, 388
Bst6I	CTCTTC	1 cut(s)	436
BstC8I	GCNNGC	2 cut(s)	416, 427
BstDEI	CTNAG	2 cut(s)	278, 333
BstF5I	GGATG	1 cut(s)	90
BstH2I	RGCGCY	1 cut(s)	426
BstHHI	GCGC	1 cut(s)	425
BstMAI	GTCTC	1 cut(s)	252
BstMWI	GCNNNNNNNGC	3 cut(s)	329, 399, 420
BstNI	CCWGG	2 cut(s)	358, 379
BstNSI	RCATGY	1 cut(s)	121
BstSCI	CCNGG	3 cut(s)	80, 356, 377
BstV1I	GCAGC	2 cut(s)	286, 300
BstV2I	GAAGAC	1 cut(s)	342
BsuRI	GGCC	1 cut(s)	65
BtrI	CACGTC	1 cut(s)	346
BtsCI	GGATG	1 cut(s)	90
Cac8I	GCNNGC	2 cut(s)	416, 427
CfoI	GCGC	1 cut(s)	425
Cfr10I	RCCGGY	2 cut(s)	58, 113
Cfr13I	GGNCC	4 cut(s)	128, 247, 375, 384
Csp6I	GTAC	4 cut(s)	13, 43, 286, 389
CviAII	CATG	3 cut(s)	118, 262, 395
CviJI	RGCY	8 cut(s)	65, 148, 240, 277, 310, 323, 332, 429
CviKI_1	RGCY	8 cut(s)	65, 148, 240, 277, 310, 323, 332, 429
CviQI	GTAC	4 cut(s)	13, 43, 286, 389
DdeI	CTNAG	2 cut(s)	278, 333
Eam1104I	CTCTTC	1 cut(s)	436
EarI	CTCTTC	1 cut(s)	436
Eco24I	GRGCYC	1 cut(s)	334
Eco47I	GGWCC	4 cut(s)	128, 247, 375, 384
Eco47III	AGCGCT	1 cut(s)	424
Eco88I	CYCGRG	1 cut(s)	223
EcoO109I	RGGNCCY	1 cut(s)	128
EcoRII	CCWGG	2 cut(s)	356, 377
EcoT38I	GRGCYC	1 cut(s)	334
FaeI	CATG	3 cut(s)	121, 265, 398
FaiI	YATR	5 cut(s)	119, 263, 320, 340, 396
FaqI	GGGAC	1 cut(s)	114
FatI	CATG	3 cut(s)	117, 261, 394
FauI	CCCGC	1 cut(s)	284
Fnu4HI	GCNGC	6 cut(s)	63, 159, 231, 275, 311, 314
FokI	GGATG	1 cut(s)	97
FriOI	GRGCYC	1 cut(s)	334
Fsp4HI	GCNGC	6 cut(s)	63, 159, 231, 275, 311, 314
GlaI	GCGC	1 cut(s)	424
GluI	GCNGC	6 cut(s)	63, 159, 231, 275, 311, 314
GsuI	CTGGAG	1 cut(s)	340
HaeII	RGCGCY	1 cut(s)	426
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	5 cut(s)	48, 59, 81, 114, 152
HhaI	GCGC	1 cut(s)	425
Hin1II	CATG	3 cut(s)	121, 265, 398
Hin6I	GCGC	1 cut(s)	423
HinP1I	GCGC	1 cut(s)	423
HinfI	GANTC	2 cut(s)	179, 185
HpaII	CCGG	5 cut(s)	48, 59, 81, 114, 152
HphI	GGTGA	2 cut(s)	48, 103
Hpy166II	GTNNAC	2 cut(s)	45, 100
Hpy188I	TCNGA	3 cut(s)	184, 298, 336
Hpy188III	TCNNGA	1 cut(s)	131
Hpy8I	GTNNAC	2 cut(s)	45, 100
Hpy99I	CGWCG	3 cut(s)	179, 247, 347
HpyAV	CCTTC	2 cut(s)	76, 400
HpyCH4III	ACNGT	2 cut(s)	175, 388
HpyCH4IV	ACGT	1 cut(s)	345
HpyF10VI	GCNNNNNNNGC	3 cut(s)	329, 399, 420
HpyF3I	CTNAG	2 cut(s)	278, 333
HpySE526I	ACGT	1 cut(s)	345
Hsp92II	CATG	3 cut(s)	121, 265, 398
HspAI	GCGC	1 cut(s)	423
KflI	GGGWCCC	1 cut(s)	128
LguI	GCTCTTC	1 cut(s)	436
LmnI	GCTCC	1 cut(s)	271
Lsp1109I	GCAGC	2 cut(s)	286, 300
MaeII	ACGT	1 cut(s)	345
MaeIII	GTNAC	1 cut(s)	109
MboII	GAAGA	4 cut(s)	61, 146, 342, 423
MhlI	GDGCHC	1 cut(s)	334
MluCI	AATT	2 cut(s)	196, 217
MnlI	CCTC	7 cut(s)	22, 159, 230, 232, 262, 364, 375
MseI	TTAA	1 cut(s)	442
MslI	CAYNNNNRTG	2 cut(s)	116, 122
MspA1I	CMGCKG	2 cut(s)	277, 313
MspI	CCGG	5 cut(s)	48, 59, 81, 114, 152
MspR9I	CCNGG	3 cut(s)	82, 358, 379
MvaI	CCWGG	2 cut(s)	358, 379
MwoI	GCNNNNNNNGC	3 cut(s)	329, 399, 420
NciI	CCSGG	1 cut(s)	82
NlaIII	CATG	3 cut(s)	121, 265, 398
NlaIV	GGNNCC	2 cut(s)	129, 130
NmuCI	GTSAC	1 cut(s)	109
NspI	RCATGY	1 cut(s)	121
PciSI	GCTCTTC	1 cut(s)	436
PcsI	WCGNNNNNNNCGW	2 cut(s)	174, 230
PfeI	GAWTC	2 cut(s)	179, 185
Pfl23II	CGTACG	1 cut(s)	388
PflFI	GACNNNGTC	1 cut(s)	173
PkrI	GCNGC	6 cut(s)	64, 160, 232, 276, 312, 315
PpuMI	RGGWCCY	1 cut(s)	128
Psp5II	RGGWCCY	1 cut(s)	128
Psp6I	CCWGG	2 cut(s)	356, 377
PspGI	CCWGG	2 cut(s)	356, 377
PspLI	CGTACG	1 cut(s)	388
PspN4I	GGNNCC	2 cut(s)	129, 130
PspPI	GGNCC	4 cut(s)	128, 247, 375, 384
PspPPI	RGGWCCY	1 cut(s)	128
PsyI	GACNNNGTC	1 cut(s)	173
PvuII	CAGCTG	1 cut(s)	277
RsaI	GTAC	4 cut(s)	14, 44, 287, 390
RsaNI	GTAC	4 cut(s)	13, 43, 286, 389
RseI	CAYNNNNRTG	2 cut(s)	116, 122
SapI	GCTCTTC	1 cut(s)	436
SaqAI	TTAA	1 cut(s)	442
SatI	GCNGC	6 cut(s)	63, 159, 231, 275, 311, 314
Sau96I	GGNCC	4 cut(s)	128, 247, 375, 384
ScrFI	CCNGG	3 cut(s)	82, 358, 379
SduI	GDGCHC	1 cut(s)	334
SetI	ASST	2 cut(s)	279, 348
SgrAI	CRCCGGYG	1 cut(s)	58
SinI	GGWCC	4 cut(s)	128, 247, 375, 384
SmiMI	CAYNNNNRTG	2 cut(s)	116, 122
Sse9I	AATT	2 cut(s)	196, 217
SsiI	CCGC	6 cut(s)	40, 62, 158, 230, 291, 311
StyD4I	CCNGG	3 cut(s)	80, 356, 377
TaaI	ACNGT	2 cut(s)	175, 388
TaiI	ACGT	1 cut(s)	348
TaqI	TCGA	2 cut(s)	168, 177
TaqII	GACCGA	1 cut(s)	235
TasI	AATT	2 cut(s)	196, 217
TauI	GCSGC	4 cut(s)	65, 161, 233, 313
TfiI	GAWTC	2 cut(s)	179, 185
Tru1I	TTAA	1 cut(s)	442
Tru9I	TTAA	1 cut(s)	442
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	2 cut(s)	274, 313
Tsp45I	GTSAC	1 cut(s)	109
TspGWI	ACGGA	3 cut(s)	30, 281, 388
Tth111I	GACNNNGTC	1 cut(s)	173
VpaK11BI	GGWCC	4 cut(s)	128, 247, 375, 384
XceI	RCATGY	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.