Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004297

Physical Location & Seq

Genomic Coordinates Reverse (-)

66496239 .. 66497408

Gene Structure 1170 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0483400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTCAATCATCCCAATCAACGAGCGACGAAGCAGTGACTTCGATCCCTGGGCCCTCGACCTCTGGGACCCATTCCTAGATTTCCCATTATTCCCTTCTTCACTCTCCAACGTTTTCCATGAACTCAATCCGGGTTTTCCCTTGGTGAATTCCCGGCTCGATTGGAGCGAGACCCGCAACGTCCACGTTCTTAAGGCAGCTCTTCCTGCGTTTGCCAACGAAGACGTGCTTGTTGAGCTTCAAGAAGACCGAGTGCTTCAGATTAGCACAGACAGCGGTAGCTTCATGACCAAGATTAAGCTCCCCGAGAACGCCAAGATTGAGGAGCTCAAGGCCTTTATGAGCAATGGGGTTGTTACTGTCACTGTTCCTAAGGGGGAGGCTGACAGGCCCAATGTCAGAGCCATTGAAATTTCTGGCGAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

142

Amino Acids

15.95

Weight (kDa)

4.58

Isoelectric Point (pI)

55.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	54 - 139	1.4e-12	Hsp20/alpha crystallin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48890
fragaria_vesca	FvH4_1g29440
malus_domestica	MD12G1015300.v1.1
prunus_persica	Prupe.7G025200_v2.0.a1 Prupe.7G025200_v2.0.a1 Prupe.7G025200_v2.0.a1
pyrus_communis	pycom14g01130
rosa_chinensis	RchiOBHm_Chr3g0495341
rosa_laevigata	RLG00000022628
rosa_multiflora	Rmu_sc0002490.1_g000021 Rmu_sc0003395.1_g000008 Rmu_sc0010754.1_g000014 Rmu_sc0026212.1_g000002 Rmu_ssc0000243.1_g000006
rosa_roxburghii	Rroxscaffold_6G00390610
rosa_rugosa	Rorug01G0121500 Rorug02G0355300 Rorug03G0272700 Rorug05G0050400 Rorug05G0483400
rosa_samantha	Rh2AG394300 Rh2AG414100 Rh2CG381000 Rh2CG400500 Rh2DG433900 Rh3AG320800 Rh3BG355800 Rh3CG352700 Rh3DG354900 Rh3DG355000 Rh4BG244800
rosa_wichuraiana	Rw3G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	175, 276
AclI	AACGTT	1 cut(s)	111
AclWI	GGATC	1 cut(s)	38
AcsI	RAATTY	2 cut(s)	148, 411
AcuI	CTGAAG	1 cut(s)	242
AflII	CTTAAG	1 cut(s)	191
AgsI	TTSAA	2 cut(s)	242, 410
AjiI	CACGTC	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	47
AluBI	AGCT	5 cut(s)	200, 238, 282, 301, 328
AluI	AGCT	5 cut(s)	200, 238, 282, 301, 328
Alw21I	GWGCWC	1 cut(s)	330
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	1 cut(s)	38
Ama87I	CYCGRG	1 cut(s)	305
AoxI	GGCC	3 cut(s)	51, 333, 389
ApaI	GGGCCC	1 cut(s)	55
ApeKI	GCWGC	1 cut(s)	197
ApoI	RAATTY	2 cut(s)	148, 411
AspS9I	GGNCC	4 cut(s)	51, 52, 67, 390
AsuC2I	CCSGG	2 cut(s)	132, 154
AsuHPI	GGTGA	1 cut(s)	157
AvaI	CYCGRG	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	67
AxyI	CCTNAGG	1 cut(s)	372
BaeGI	GKGCMC	1 cut(s)	55
BanII	GRGCYC	2 cut(s)	55, 330
BbsI	GAAGAC	2 cut(s)	228, 252
Bbv12I	GWGCWC	1 cut(s)	330
BbvI	GCAGC	1 cut(s)	209
BcgI	CGANNNNNNTGC	2 cut(s)	22, 56
BciT130I	CCWGG	1 cut(s)	49
BcnI	CCSGG	2 cut(s)	132, 154
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	1 cut(s)	77
BfrI	CTTAAG	1 cut(s)	191
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme1390I	CCNGG	3 cut(s)	49, 132, 154
Bme18I	GGWCC	1 cut(s)	67
BmeT110I	CYCGRG	1 cut(s)	305
BmgBI	CACGTC	1 cut(s)	226
BmgT120I	GGNCC	4 cut(s)	51, 52, 67, 390
BmiI	GGNNCC	3 cut(s)	53, 68, 69
BmrFI	CCNGG	3 cut(s)	49, 132, 154
BpiI	GAAGAC	2 cut(s)	228, 252
BpuEI	CTTGAG	1 cut(s)	314
BpuMI	CCSGG	2 cut(s)	132, 154
BsaI	GGTCTC	1 cut(s)	164
BsaJI	CCNNGG	3 cut(s)	47, 48, 141
Bse21I	CCTNAGG	1 cut(s)	372
Bse3DI	GCAATG	1 cut(s)	352
BseBI	CCWGG	1 cut(s)	49
BseDI	CCNNGG	3 cut(s)	47, 48, 141
BseGI	GGATG	1 cut(s)	9
BseMI	GCAATG	1 cut(s)	352
BseRI	GAGGAG	1 cut(s)	338
BseSI	GKGCMC	1 cut(s)	55
BseXI	GCAGC	1 cut(s)	209
BshFI	GGCC	3 cut(s)	53, 335, 391
BsiHKAI	GWGCWC	1 cut(s)	330
BsiHKCI	CYCGRG	1 cut(s)	305
BsiSI	CCGG	2 cut(s)	131, 154
BslFI	GGGAC	1 cut(s)	80
BsmAI	GTCTC	1 cut(s)	164
BsmFI	GGGAC	1 cut(s)	80
BsnI	GGCC	3 cut(s)	53, 335, 391
Bso31I	GGTCTC	1 cut(s)	164
BsoBI	CYCGRG	1 cut(s)	305
Bsp120I	GGGCCC	1 cut(s)	51
Bsp1286I	GDGCHC	2 cut(s)	55, 330
Bsp143I	GATC	1 cut(s)	43
BspACI	CCGC	2 cut(s)	175, 276
BspANI	GGCC	3 cut(s)	53, 335, 391
BspHI	TCATGA	1 cut(s)	285
BspLI	GGNNCC	3 cut(s)	53, 68, 69
BspPI	GGATC	1 cut(s)	38
BspQI	GCTCTTC	1 cut(s)	207
BspTI	CTTAAG	1 cut(s)	191
BspTNI	GGTCTC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	352
BssECI	CCNNGG	3 cut(s)	47, 48, 141
BssMI	GATC	1 cut(s)	43
BssT1I	CCWWGG	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	49
Bst4CI	ACNGT	2 cut(s)	361, 367
Bst6I	CTCTTC	1 cut(s)	207
BstAFI	CTTAAG	1 cut(s)	191
BstDEI	CTNAG	1 cut(s)	372
BstF5I	GGATG	1 cut(s)	9
BstKTI	GATC	1 cut(s)	46
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	1 cut(s)	43
BstMWI	GCNNNNNNNGC	4 cut(s)	174, 206, 235, 273
BstNI	CCWGG	1 cut(s)	49
BstSCI	CCNGG	3 cut(s)	47, 130, 152
BstSLI	GKGCMC	1 cut(s)	55
BstV1I	GCAGC	1 cut(s)	209
BstV2I	GAAGAC	2 cut(s)	228, 252
Bsu36I	CCTNAGG	1 cut(s)	372
BsuRI	GGCC	3 cut(s)	53, 335, 391
BtrI	CACGTC	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	9
BtsI	GCAGTG	1 cut(s)	40
BtsIMutI	CAGTG	2 cut(s)	40, 363
CciI	TCATGA	1 cut(s)	285
Cfr13I	GGNCC	4 cut(s)	51, 52, 67, 390
CviAII	CATG	2 cut(s)	119, 286
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Ecl136II	GAGCTC	1 cut(s)	328
Eco130I	CCWWGG	1 cut(s)	141
Eco147I	AGGCCT	1 cut(s)	335
Eco24I	GRGCYC	2 cut(s)	55, 330
Eco31I	GGTCTC	1 cut(s)	164
Eco47I	GGWCC	1 cut(s)	67
Eco53kI	GAGCTC	1 cut(s)	328
Eco57I	CTGAAG	1 cut(s)	242
Eco81I	CCTNAGG	1 cut(s)	372
Eco88I	CYCGRG	1 cut(s)	305
EcoICRI	GAGCTC	1 cut(s)	328
EcoO109I	RGGNCCY	2 cut(s)	52, 67
EcoRI	GAATTC	1 cut(s)	148
EcoRII	CCWGG	1 cut(s)	47
EcoT14I	CCWWGG	1 cut(s)	141
EcoT38I	GRGCYC	2 cut(s)	55, 330
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	2 cut(s)	122, 289
FaiI	YATR	3 cut(s)	120, 287, 341
FalI	AAGNNNNNCTT	2 cut(s)	213, 245
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	2 cut(s)	118, 285
FauI	CCCGC	1 cut(s)	182
Fnu4HI	GCNGC	1 cut(s)	198
FriOI	GRGCYC	2 cut(s)	55, 330
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	1 cut(s)	77
GluI	GCNGC	1 cut(s)	198
HaeIII	GGCC	3 cut(s)	53, 335, 391
HapII	CCGG	2 cut(s)	131, 154
Hin1II	CATG	2 cut(s)	122, 289
HpaII	CCGG	2 cut(s)	131, 154
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	2 cut(s)	261, 401
Hpy188III	TCNNGA	2 cut(s)	242, 286
Hpy8I	GTNNAC	1 cut(s)	184
Hpy99I	CGWCG	1 cut(s)	30
HpyAV	CCTTC	1 cut(s)	105
HpyCH4III	ACNGT	2 cut(s)	361, 367
HpyCH4IV	ACGT	4 cut(s)	111, 180, 186, 225
HpyF10VI	GCNNNNNNNGC	4 cut(s)	174, 206, 235, 273
HpyF3I	CTNAG	1 cut(s)	372
HpySE526I	ACGT	4 cut(s)	111, 180, 186, 225
Hsp92II	CATG	2 cut(s)	122, 289
KflI	GGGWCCC	1 cut(s)	67
Kzo9I	GATC	1 cut(s)	43
LguI	GCTCTTC	1 cut(s)	207
LmnI	GCTCC	3 cut(s)	165, 306, 325
LpnPI	CCDG	8 cut(s)	34, 49, 61, 144, 167, 219, 373, 402
Lsp1109I	GCAGC	1 cut(s)	209
MaeI	CTAG	1 cut(s)	77
MaeII	ACGT	4 cut(s)	111, 180, 186, 225
MaeIII	GTNAC	3 cut(s)	35, 355, 361
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MboII	GAAGA	4 cut(s)	90, 194, 233, 257
MhlI	GDGCHC	2 cut(s)	55, 330
MluCI	AATT	2 cut(s)	148, 411
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	4 cut(s)	65, 71, 316, 373
MseI	TTAA	3 cut(s)	192, 297, 427
MspA1I	CMGCKG	1 cut(s)	276
MspCI	CTTAAG	1 cut(s)	191
MspI	CCGG	2 cut(s)	131, 154
MspR9I	CCNGG	3 cut(s)	49, 132, 154
MvaI	CCWGG	1 cut(s)	49
MwoI	GCNNNNNNNGC	4 cut(s)	174, 206, 235, 273
NciI	CCSGG	2 cut(s)	132, 154
NdeII	GATC	1 cut(s)	43
NlaIII	CATG	2 cut(s)	122, 289
NlaIV	GGNNCC	3 cut(s)	53, 68, 69
NmuCI	GTSAC	2 cut(s)	35, 361
PagI	TCATGA	1 cut(s)	285
PasI	CCCWGGG	1 cut(s)	48
PceI	AGGCCT	1 cut(s)	335
PciSI	GCTCTTC	1 cut(s)	207
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PkrI	GCNGC	1 cut(s)	199
PpuMI	RGGWCCY	1 cut(s)	67
Psp124BI	GAGCTC	1 cut(s)	330
Psp1406I	AACGTT	1 cut(s)	111
Psp5II	RGGWCCY	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	47
PspGI	CCWGG	1 cut(s)	47
PspN4I	GGNNCC	3 cut(s)	53, 68, 69
PspOMI	GGGCCC	1 cut(s)	51
PspPI	GGNCC	4 cut(s)	51, 52, 67, 390
PspPPI	RGGWCCY	1 cut(s)	67
SacI	GAGCTC	1 cut(s)	330
SapI	GCTCTTC	1 cut(s)	207
SaqAI	TTAA	3 cut(s)	192, 297, 427
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	1 cut(s)	43
Sau96I	GGNCC	4 cut(s)	51, 52, 67, 390
ScrFI	CCNGG	3 cut(s)	49, 132, 154
SduI	GDGCHC	2 cut(s)	55, 330
SinI	GGWCC	1 cut(s)	67
SmlI	CTYRAG	2 cut(s)	191, 329
SmoI	CTYRAG	2 cut(s)	191, 329
Sse9I	AATT	2 cut(s)	148, 411
SseBI	AGGCCT	1 cut(s)	335
SsiI	CCGC	2 cut(s)	175, 276
SspMI	CTAG	1 cut(s)	77
SstI	GAGCTC	1 cut(s)	330
StuI	AGGCCT	1 cut(s)	335
StyD4I	CCNGG	3 cut(s)	47, 130, 152
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	2 cut(s)	361, 367
TaiI	ACGT	4 cut(s)	114, 183, 189, 228
TaqI	TCGA	3 cut(s)	42, 57, 159
TaqII	GACCGA	1 cut(s)	264
TasI	AATT	2 cut(s)	148, 411
Tru1I	TTAA	3 cut(s)	192, 297, 427
Tru9I	TTAA	3 cut(s)	192, 297, 427
TscAI	CASTG	2 cut(s)	40, 370
TseFI	GTSAC	2 cut(s)	35, 361
TseI	GCWGC	1 cut(s)	197
Tsp45I	GTSAC	2 cut(s)	35, 361
TspDTI	ATGAA	2 cut(s)	135, 274
TspRI	CASTG	2 cut(s)	40, 370
Vha464I	CTTAAG	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	67
XapI	RAATTY	2 cut(s)	148, 411
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.