Rh3CG352600

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0013273
Physical Location & Seq
Forward (+)
42664030 .. 42665491
1462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG352600.1

Sequence Viewer

Length: 513 bp
ATGGGTGATCACTACTCGATATTGGGTCTGACAAGGAATGCGAGCAAAGAAGAAATTAAAGAGGCGTTCAGGAAGCTGGCGGTGAAGCTGCACCCAGACAAGCATGCCCATTCTTCTAAGGCGGTGAGGGACACCGCCACCCTCCGATTCAAGCAGGCCTCCGAAGCTTATCAGGTCCTCATCGACGATCGCAAGCGCGCCGACTACAATTTCCGAACCTCATCCGCTTCCTATTCCCGAACCTCCTCCTCCTCCTCCTCCGGTTACGGTTACAGTAGAAATAACCGCAATTATGCTTCTGCTTCTAGACCCTCCAGCTTTGACAGTCTGCTTCGCTATGTCACCACGCGTGCCTTCCTTCTCAACGTCTCCGTTGCAGGGGCTCTATTAGGTGGCGTGGGCGTCGTTAATATGGGATGGGATGCCTTATGGAAGATACGTAATTCTGGGAAATCATTTGAAGAAGCGATGGAATCTGTTGAAAAGGCCAAAGCACATAAAGAGAAGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

170

Amino Acids

18.92

Weight (kDa)

9.91

Isoelectric Point (pI)

38.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 3 - 70 3.3e-21 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013273)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41000 AT2G41000
fragaria_vesca FvH4_1g29450 FvH4_1g29450
malus_domestica MD14G1013400.v1.1
prunus_persica Prupe.7G025100_v2.0.a1
pyrus_communis pycom14g01140
rosa_chinensis RchiOBHm_Chr3g0495321
rosa_laevigata RLG00000022629
rosa_multiflora Rmu_ssc0000243.1_g000005
rosa_roxburghii Rroxscaffold_6G00390620
rosa_rugosa Rorug03G0272600 Rorug03G0272700
rosa_samantha Rh3AG320600 Rh3BG355600 Rh3CG352600 Rh3DG354800
rosa_wichuraiana Rw3G027980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 198, 349
AciI CCGC 5 cut(s) 80, 122, 135, 225, 286
AcyI GRCGYC 1 cut(s) 402
AfiI CCNNNNNNNGG 1 cut(s) 378
AflIII ACRYGT 1 cut(s) 347
AgsI TTSAA 3 cut(s) 151, 461, 482
AluBI AGCT 5 cut(s) 76, 88, 167, 318, 508
AluI AGCT 5 cut(s) 76, 88, 167, 318, 508
Alw26I GTCTC 1 cut(s) 373
AoxI GGCC 2 cut(s) 156, 486
ApeKI GCWGC 1 cut(s) 88
AspLEI GCGC 2 cut(s) 198, 200
AspS9I GGNCC 1 cut(s) 175
AsuHPI GGTGA 4 cut(s) 17, 94, 136, 334
AvaII GGWCC 1 cut(s) 175
BanII GRGCYC 1 cut(s) 385
BbvI GCAGC 1 cut(s) 75
BccI CCATC 2 cut(s) 411, 463
BclI TGATCA 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 373
BfaI CTAG 1 cut(s) 306
BfmI CTRYAG 1 cut(s) 509
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
Bme18I GGWCC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 175
BmsI GCATC 1 cut(s) 412
BpmI CTGGAG 1 cut(s) 298
BsaAI YACGTR 1 cut(s) 440
BsaHI GRCGYC 1 cut(s) 402
BsaWI WCCGGW 1 cut(s) 260
Bsc4I CCNNNNNNNGG 1 cut(s) 378
BseGI GGATG 3 cut(s) 221, 422, 427
BseLI CCNNNNNNNGG 1 cut(s) 378
BsePI GCGCGC 1 cut(s) 196
BseRI GAGGAG 5 cut(s) 235, 238, 241, 244, 247
BseXI GCAGC 1 cut(s) 75
BsgI GTGCAG 1 cut(s) 74
Bsh1236I CGCG 2 cut(s) 198, 349
Bsh1285I CGRYCG 1 cut(s) 190
BshFI GGCC 2 cut(s) 158, 488
BsiEI CGRYCG 1 cut(s) 190
BsiSI CCGG 1 cut(s) 261
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 378
BsmAI GTCTC 1 cut(s) 373
BsmBI CGTCTC 1 cut(s) 373
BsmFI GGGAC 1 cut(s) 143
BsmI GAATGC 1 cut(s) 43
BsnI GGCC 2 cut(s) 158, 488
Bsp1286I GDGCHC 1 cut(s) 385
Bsp143I GATC 2 cut(s) 7, 187
BspACI CCGC 5 cut(s) 80, 122, 135, 225, 286
BspANI GGCC 2 cut(s) 158, 488
BspFNI CGCG 2 cut(s) 198, 349
BssHII GCGCGC 1 cut(s) 196
BssMI GATC 2 cut(s) 7, 187
BssNI GRCGYC 1 cut(s) 402
Bst4CI ACNGT 3 cut(s) 269, 275, 326
BstACI GRCGYC 1 cut(s) 402
BstBAI YACGTR 1 cut(s) 440
BstC8I GCNNGC 7 cut(s) 43, 78, 105, 156, 194, 198, 351
BstDEI CTNAG 1 cut(s) 117
BstF5I GGATG 3 cut(s) 221, 422, 427
BstFNI CGCG 2 cut(s) 198, 349
BstHHI GCGC 2 cut(s) 198, 200
BstKTI GATC 2 cut(s) 10, 190
BstMAI GTCTC 1 cut(s) 373
BstMBI GATC 2 cut(s) 7, 187
BstMCI CGRYCG 1 cut(s) 190
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstNSI RCATGY 1 cut(s) 107
BstSFI CTRYAG 1 cut(s) 509
BstSNI TACGTA 1 cut(s) 440
BstUI CGCG 2 cut(s) 198, 349
BstV1I GCAGC 1 cut(s) 75
BsuRI GGCC 2 cut(s) 158, 488
BtgZI GCGATG 1 cut(s) 482
BtsCI GGATG 3 cut(s) 221, 422, 427
Cac8I GCNNGC 7 cut(s) 43, 78, 105, 156, 194, 198, 351
CfoI GCGC 2 cut(s) 198, 200
Cfr13I GGNCC 1 cut(s) 175
CseI GACGC 1 cut(s) 391
CviAII CATG 1 cut(s) 104
CviJI RGCY 8 cut(s) 76, 88, 158, 167, 318, 383, 488, 508
CviKI_1 RGCY 8 cut(s) 76, 88, 158, 167, 318, 383, 488, 508
DdeI CTNAG 1 cut(s) 117
DpnI GATC 2 cut(s) 9, 189
DpnII GATC 2 cut(s) 7, 187
Eco105I TACGTA 1 cut(s) 440
Eco147I AGGCCT 1 cut(s) 158
Eco24I GRGCYC 1 cut(s) 385
Eco47I GGWCC 1 cut(s) 175
EcoO109I RGGNCCY 1 cut(s) 175
EcoT38I GRGCYC 1 cut(s) 385
Esp3I CGTCTC 1 cut(s) 373
FaeI CATG 1 cut(s) 107
FaiI YATR 6 cut(s) 105, 294, 339, 413, 430, 498
FaqI GGGAC 1 cut(s) 143
FatI CATG 1 cut(s) 103
FbaI TGATCA 1 cut(s) 7
Fnu4HI GCNGC 1 cut(s) 89
FokI GGATG 3 cut(s) 208, 429, 434
FriOI GRGCYC 1 cut(s) 385
Fsp4HI GCNGC 1 cut(s) 89
FspBI CTAG 1 cut(s) 306
GlaI GCGC 2 cut(s) 197, 199
GluI GCNGC 1 cut(s) 89
GsuI CTGGAG 1 cut(s) 298
HaeIII GGCC 2 cut(s) 158, 488
HapII CCGG 1 cut(s) 261
HgaI GACGC 1 cut(s) 391
HhaI GCGC 2 cut(s) 198, 200
Hin1I GRCGYC 1 cut(s) 402
Hin1II CATG 1 cut(s) 107
Hin6I GCGC 2 cut(s) 196, 198
HinP1I GCGC 2 cut(s) 196, 198
HindIII AAGCTT 1 cut(s) 165
HinfI GANTC 2 cut(s) 147, 473
HpaII CCGG 1 cut(s) 261
HphI GGTGA 4 cut(s) 17, 94, 136, 334
Hpy188I TCNGA 4 cut(s) 30, 146, 163, 215
Hpy188III TCNNGA 3 cut(s) 70, 237, 306
Hpy99I CGWCG 2 cut(s) 188, 407
HpyAV CCTTC 2 cut(s) 364, 368
HpyCH4III ACNGT 3 cut(s) 269, 275, 326
HpyCH4IV ACGT 2 cut(s) 366, 439
HpyCH4V TGCA 2 cut(s) 91, 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 1 cut(s) 117
HpySE526I ACGT 2 cut(s) 366, 439
Hsp92I GRCGYC 1 cut(s) 402
Hsp92II CATG 1 cut(s) 107
HspAI GCGC 2 cut(s) 196, 198
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 2 cut(s) 7, 187
LpnPI CCDG 9 cut(s) 55, 62, 108, 140, 158, 274, 328, 363, 432
Lsp1109I GCAGC 1 cut(s) 75
LweI GCATC 1 cut(s) 412
MaeI CTAG 1 cut(s) 306
MaeII ACGT 2 cut(s) 366, 439
MaeIII GTNAC 3 cut(s) 263, 269, 340
MalI GATC 2 cut(s) 9, 189
MboI GATC 2 cut(s) 7, 187
MboII GAAGA 4 cut(s) 62, 105, 445, 473
MhlI GDGCHC 1 cut(s) 385
MluCI AATT 4 cut(s) 54, 208, 289, 442
MluI ACGCGT 1 cut(s) 347
MseI TTAA 2 cut(s) 57, 408
MspI CCGG 1 cut(s) 261
Mva1269I GAATGC 1 cut(s) 43
MvnI CGCG 2 cut(s) 198, 349
MwoI GCNNNNNNNGC 1 cut(s) 164
NdeII GATC 2 cut(s) 7, 187
NlaIII CATG 1 cut(s) 107
NmuCI GTSAC 1 cut(s) 340
NspI RCATGY 1 cut(s) 107
PaeI GCATGC 1 cut(s) 107
PauI GCGCGC 1 cut(s) 196
PceI AGGCCT 1 cut(s) 158
PctI GAATGC 1 cut(s) 43
PfeI GAWTC 2 cut(s) 147, 473
PkrI GCNGC 1 cut(s) 90
Ple19I CGATCG 1 cut(s) 190
Ppu21I YACGTR 1 cut(s) 440
PpuMI RGGWCCY 1 cut(s) 175
Psp5II RGGWCCY 1 cut(s) 175
PspPI GGNCC 1 cut(s) 175
PspPPI RGGWCCY 1 cut(s) 175
PteI GCGCGC 1 cut(s) 196
PvuI CGATCG 1 cut(s) 190
SaqAI TTAA 2 cut(s) 57, 408
SatI GCNGC 1 cut(s) 89
Sau3AI GATC 2 cut(s) 7, 187
Sau96I GGNCC 1 cut(s) 175
SduI GDGCHC 1 cut(s) 385
SfaNI GCATC 1 cut(s) 412
SfcI CTRYAG 1 cut(s) 509
SinI GGWCC 1 cut(s) 175
SnaBI TACGTA 1 cut(s) 440
SphI GCATGC 1 cut(s) 107
Sse9I AATT 4 cut(s) 54, 208, 289, 442
SseBI AGGCCT 1 cut(s) 158
SsiI CCGC 5 cut(s) 80, 122, 135, 225, 286
SspMI CTAG 1 cut(s) 306
StuI AGGCCT 1 cut(s) 158
TaaI ACNGT 3 cut(s) 269, 275, 326
TaiI ACGT 2 cut(s) 369, 442
TaqI TCGA 2 cut(s) 17, 183
TasI AATT 4 cut(s) 54, 208, 289, 442
TfiI GAWTC 2 cut(s) 147, 473
Tru1I TTAA 2 cut(s) 57, 408
Tru9I TTAA 2 cut(s) 57, 408
TseFI GTSAC 1 cut(s) 340
TseI GCWGC 1 cut(s) 88
Tsp45I GTSAC 1 cut(s) 340
TspGWI ACGGA 1 cut(s) 361
VpaK11BI GGWCC 1 cut(s) 175
XbaI TCTAGA 1 cut(s) 305
XceI RCATGY 1 cut(s) 107
XspI CTAG 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.