Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006307

Physical Location & Seq

Genomic Coordinates Forward (+)

17269158 .. 17270542

Gene Structure 1385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G41430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCGATGGTATCAGGAAGACGATCTACTCTAAACCCCGACGCACCTCTTTTTATTCCGGCAGCTGTACGACAAGTGGAAGATTTCTCACCGGAGTGGTGGCAATTGGTGACAACTTCGACTTGGTACCCTGATTACTGGATCAGTCAGCAGCAGCAAGGCGCGGATGGTTTCTATGACAACGGAGAGAATGAGAATGGTGGAGGTCATATCGATGTAGCTGATCTTCTTCCAGAATCATTTGATTTTGATGATATGGAAGATTTCTTTGACACTGATGCTGCTGAGTTTGATCAAGGATTCGATGGAAGAATGTATTACCAAGCACCTTCCGAATTTGGCTTTGGAAAGAATGGTGAGATGGTTAAGAAATCAAGTGGAAACAGGAGCCCGAGATCGATTGTGGAACCAGCTAAGTATGCGGAAAAGCCAGCGAAATGGGGAAACCAGAGGGTTGCTGCTGCTCCGAGAAACATCCACCAGCCTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009642 GO:0009644 GO:0010035 GO:0042221 GO:0043207 GO:0044424 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2

Protein Analysis

163

Amino Acids

18.41

Weight (kDa)

4.51

Isoelectric Point (pI)

56.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41430 AT2G41430 AT2G41430 AT2G41430 AT2G41430
fragaria_vesca	FvH4_6g24790 FvH4_6g24790
malus_domestica	MD14G1081500.v1.1
prunus_persica	Prupe.7G049200_v2.0.a1 Prupe.7G049200_v2.0.a1
pyrus_communis	pycom12g07430 pycom14g07080
rosa_chinensis	RchiOBHm_Chr2g0124241
rosa_laevigata	RLG00000018791 RLG00000018799
rosa_multiflora	Rmu_co8344463.1_g000001 Rmu_sc0002968.1_g000006 Rmu_sc0005472.1_g000018
rosa_roxburghii	Rroxscaffold_2G00120020
rosa_rugosa	Rorug02G0250400 Rorug02G0250400 Rorug02G0250500.1
rosa_samantha	Rh2BG317800 Rh2CG296200 Rh2CG301200 Rh2DG333300
rosa_wichuraiana	Rw2G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	126
AccB1I	GGYRCC	1 cut(s)	126
AccII	CGCG	1 cut(s)	164
AciI	CCGC	2 cut(s)	164, 422
AclWI	GGATC	1 cut(s)	149
AcsI	RAATTY	1 cut(s)	335
AfaI	GTAC	2 cut(s)	69, 128
AjuI	GAANNNNNNNTTGG	2 cut(s)	327, 359
AleI	CACNNNNGTG	1 cut(s)	94
AluBI	AGCT	3 cut(s)	65, 221, 413
AluI	AGCT	3 cut(s)	65, 221, 413
AlwI	GGATC	1 cut(s)	149
Ama87I	CYCGRG	1 cut(s)	391
ApeKI	GCWGC	6 cut(s)	62, 151, 154, 281, 458, 461
ApoI	RAATTY	1 cut(s)	335
Asp718I	GGTACC	1 cut(s)	126
AspLEI	GCGC	1 cut(s)	164
AsuHPI	GGTGA	3 cut(s)	81, 121, 368
AvaI	CYCGRG	1 cut(s)	391
BanI	GGYRCC	1 cut(s)	126
BanII	GRGCYC	1 cut(s)	392
BarI	GAAGNNNNNNTAC	4 cut(s)	10, 42, 210, 242
BbsI	GAAGAC	1 cut(s)	25
BbvI	GCAGC	6 cut(s)	74, 163, 166, 268, 445, 448
BccI	CCATC	3 cut(s)	161, 299, 355
BclI	TGATCA	1 cut(s)	292
BisI	GCNGC	6 cut(s)	63, 152, 155, 282, 459, 462
BlsI	GCNGC	6 cut(s)	64, 153, 156, 283, 460, 463
BmeT110I	CYCGRG	1 cut(s)	391
BmiI	GGNNCC	3 cut(s)	128, 389, 408
BmsI	GCATC	1 cut(s)	268
BpiI	GAAGAC	1 cut(s)	25
Bsa29I	ATCGAT	2 cut(s)	213, 398
BsaWI	WCCGGW	1 cut(s)	91
Bse1I	ACTGG	1 cut(s)	143
BseCI	ATCGAT	2 cut(s)	213, 398
BseGI	GGATG	2 cut(s)	172, 474
BseMII	CTCAG	1 cut(s)	276
BseNI	ACTGG	1 cut(s)	143
BseXI	GCAGC	6 cut(s)	74, 163, 166, 268, 445, 448
Bsh1236I	CGCG	1 cut(s)	164
BshNI	GGYRCC	1 cut(s)	126
BshVI	ATCGAT	2 cut(s)	213, 398
BsiHKCI	CYCGRG	1 cut(s)	391
BsiSI	CCGG	2 cut(s)	59, 92
BsoBI	CYCGRG	1 cut(s)	391
Bsp1286I	GDGCHC	1 cut(s)	392
Bsp143I	GATC	5 cut(s)	23, 141, 223, 292, 395
BspACI	CCGC	2 cut(s)	164, 422
BspCNI	CTCAG	1 cut(s)	277
BspDI	ATCGAT	2 cut(s)	213, 398
BspFNI	CGCG	1 cut(s)	164
BspLI	GGNNCC	3 cut(s)	128, 389, 408
BspPI	GGATC	1 cut(s)	149
BspT107I	GGYRCC	1 cut(s)	126
BsrI	ACTGG	1 cut(s)	143
BssMI	GATC	5 cut(s)	23, 141, 223, 292, 395
BstC8I	GCNNGC	1 cut(s)	432
BstDEI	CTNAG	2 cut(s)	285, 414
BstF5I	GGATG	2 cut(s)	172, 474
BstFNI	CGCG	1 cut(s)	164
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	5 cut(s)	26, 144, 226, 295, 398
BstMBI	GATC	5 cut(s)	23, 141, 223, 292, 395
BstMWI	GCNNNNNNNGC	1 cut(s)	419
BstUI	CGCG	1 cut(s)	164
BstV1I	GCAGC	6 cut(s)	74, 163, 166, 268, 445, 448
BstV2I	GAAGAC	1 cut(s)	25
BstXI	CCANNNNNNTGG	1 cut(s)	438
Bsu15I	ATCGAT	2 cut(s)	213, 398
BsuTUI	ATCGAT	2 cut(s)	213, 398
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	172, 474
BtsIMutI	CAGTG	1 cut(s)	273
Cac8I	GCNNGC	1 cut(s)	432
CfoI	GCGC	1 cut(s)	164
ClaI	ATCGAT	2 cut(s)	213, 398
CseI	GACGC	1 cut(s)	50
Csp6I	GTAC	2 cut(s)	68, 127
CviJI	RGCY	7 cut(s)	65, 221, 342, 390, 413, 430, 484
CviKI_1	RGCY	7 cut(s)	65, 221, 342, 390, 413, 430, 484
CviQI	GTAC	2 cut(s)	68, 127
DdeI	CTNAG	2 cut(s)	285, 414
DpnI	GATC	5 cut(s)	25, 143, 225, 294, 397
DpnII	GATC	5 cut(s)	23, 141, 223, 292, 395
Eco24I	GRGCYC	1 cut(s)	392
Eco88I	CYCGRG	1 cut(s)	391
EcoT38I	GRGCYC	1 cut(s)	392
FaiI	YATR	4 cut(s)	177, 210, 257, 420
FbaI	TGATCA	1 cut(s)	292
Fnu4HI	GCNGC	6 cut(s)	63, 152, 155, 282, 459, 462
FokI	GGATG	2 cut(s)	179, 461
FriOI	GRGCYC	1 cut(s)	392
Fsp4HI	GCNGC	6 cut(s)	63, 152, 155, 282, 459, 462
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	6 cut(s)	63, 152, 155, 282, 459, 462
HapII	CCGG	2 cut(s)	59, 92
HgaI	GACGC	1 cut(s)	50
HhaI	GCGC	1 cut(s)	164
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HinfI	GANTC	2 cut(s)	236, 300
HpaII	CCGG	2 cut(s)	59, 92
HphI	GGTGA	3 cut(s)	81, 121, 368
Hpy188I	TCNGA	2 cut(s)	334, 468
Hpy188III	TCNNGA	2 cut(s)	15, 233
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	339
HpyF10VI	GCNNNNNNNGC	1 cut(s)	419
HpyF3I	CTNAG	2 cut(s)	285, 414
HspAI	GCGC	1 cut(s)	162
KpnI	GGTACC	1 cut(s)	130
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	5 cut(s)	23, 141, 223, 292, 395
LmnI	GCTCC	2 cut(s)	387, 469
LpnPI	CCDG	9 cut(s)	72, 105, 124, 144, 246, 370, 423, 444, 461
Lsp1109I	GCAGC	6 cut(s)	74, 163, 166, 268, 445, 448
LweI	GCATC	1 cut(s)	268
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	5 cut(s)	25, 143, 225, 294, 397
MboI	GATC	5 cut(s)	23, 141, 223, 292, 395
MboII	GAAGA	6 cut(s)	30, 92, 218, 221, 272, 321
MfeI	CAATTG	1 cut(s)	104
MhlI	GDGCHC	1 cut(s)	392
MluCI	AATT	2 cut(s)	104, 335
MnlI	CCTC	3 cut(s)	57, 197, 444
MseI	TTAA	1 cut(s)	366
MslI	CAYNNNNRTG	2 cut(s)	94, 213
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	2 cut(s)	59, 92
MunI	CAATTG	1 cut(s)	104
MvnI	CGCG	1 cut(s)	164
MwoI	GCNNNNNNNGC	1 cut(s)	419
NdeII	GATC	5 cut(s)	23, 141, 223, 292, 395
NlaIV	GGNNCC	3 cut(s)	128, 389, 408
NmuCI	GTSAC	1 cut(s)	109
OliI	CACNNNNGTG	1 cut(s)	94
PfeI	GAWTC	2 cut(s)	236, 300
PkrI	GCNGC	6 cut(s)	64, 153, 156, 283, 460, 463
PspN4I	GGNNCC	3 cut(s)	128, 389, 408
PvuII	CAGCTG	1 cut(s)	65
RsaI	GTAC	2 cut(s)	69, 128
RsaNI	GTAC	2 cut(s)	68, 127
RseI	CAYNNNNRTG	2 cut(s)	94, 213
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	6 cut(s)	63, 152, 155, 282, 459, 462
Sau3AI	GATC	5 cut(s)	23, 141, 223, 292, 395
SduI	GDGCHC	1 cut(s)	392
SetI	ASST	6 cut(s)	49, 67, 208, 223, 331, 415
SfaNI	GCATC	1 cut(s)	268
SmiMI	CAYNNNNRTG	2 cut(s)	94, 213
Sse9I	AATT	2 cut(s)	104, 335
SsiI	CCGC	2 cut(s)	164, 422
TaqI	TCGA	4 cut(s)	119, 213, 303, 398
TasI	AATT	2 cut(s)	104, 335
TfiI	GAWTC	2 cut(s)	236, 300
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TscAI	CASTG	1 cut(s)	280
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	6 cut(s)	62, 151, 154, 281, 458, 461
Tsp45I	GTSAC	1 cut(s)	109
TspGWI	ACGGA	1 cut(s)	198
TspRI	CASTG	1 cut(s)	280
XapI	RAATTY	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.