Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006307

Physical Location & Seq

Genomic Coordinates Forward (+)

18784878 .. 18786507

Gene Structure 1630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g24790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCCCTGGTTTCTGGAAGATCAACTTTGAATCCAAATGCTCCTCTCTTTATCCCCGCTGCTCTCCGCCAAGTGGAGGATTTCTCCCCTGAATGGTGGCAACTGGTCACCACCTCCACATGGTACCATGACTATTGGCTTAGTCAGAACCAGGATGAGGATGGCTTCTATGATAATGCTCATGATAACTATGACAATGTGGCTGATTTACTGCCTGAGACCTTTGATCTCGATGCTGGGGAGGACTTCTCTAATTTTGAAGCTGCTCAGTTTGAAGAGTTCCTCCAGTCGACTCAAACTGAAAATAAAAATGCAGGGTTAGATACAAGTGCCACGGTTCTGAAGAATTTGAAAGCATCAGAAGGAAGACGTCCCAAGCTGCTGGTGGAGCCAAGGAAGTATGCAGAGAAGCCAGCCAAGTTTGTGAGTCCAAAATGCAGTCCCCGCTTCATCCAACAGCCTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009642 GO:0009644 GO:0010035 GO:0042221 GO:0043207 GO:0044424 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2

Protein Analysis

156

Amino Acids

17.74

Weight (kDa)

4.65

Isoelectric Point (pI)

54.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41430 AT2G41430 AT2G41430 AT2G41430 AT2G41430
fragaria_vesca	FvH4_6g24790 FvH4_6g24790
malus_domestica	MD14G1081500.v1.1
prunus_persica	Prupe.7G049200_v2.0.a1 Prupe.7G049200_v2.0.a1
pyrus_communis	pycom12g07430 pycom14g07080
rosa_chinensis	RchiOBHm_Chr2g0124241
rosa_laevigata	RLG00000018791 RLG00000018799
rosa_multiflora	Rmu_co8344463.1_g000001 Rmu_sc0002968.1_g000006 Rmu_sc0005472.1_g000018
rosa_roxburghii	Rroxscaffold_2G00120020
rosa_rugosa	Rorug02G0250400 Rorug02G0250400 Rorug02G0250500.1
rosa_samantha	Rh2BG317800 Rh2CG296200 Rh2CG301200 Rh2DG333300
rosa_wichuraiana	Rw2G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	373
Acc65I	GGTACC	1 cut(s)	123
AccB1I	GGYRCC	1 cut(s)	123
AccI	GTMKAC	1 cut(s)	290
AciI	CCGC	3 cut(s)	57, 67, 445
AcsI	RAATTY	1 cut(s)	346
AcuI	CTGAAG	1 cut(s)	362
AcyI	GRCGYC	1 cut(s)	370
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	5 cut(s)	73, 76, 93, 120, 157
AgsI	TTSAA	4 cut(s)	31, 260, 275, 352
AjnI	CCWGG	2 cut(s)	6, 150
AluBI	AGCT	2 cut(s)	263, 379
AluI	AGCT	2 cut(s)	263, 379
Alw26I	GTCTC	1 cut(s)	212
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	59, 263, 379
ApoI	RAATTY	1 cut(s)	346
Asp718I	GGTACC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	100
BanI	GGYRCC	1 cut(s)	123
BbsI	GAAGAC	1 cut(s)	373
BbvI	GCAGC	3 cut(s)	46, 250, 366
BccI	CCATC	1 cut(s)	155
BciT130I	CCWGG	2 cut(s)	8, 152
BcoDI	GTCTC	1 cut(s)	212
BisI	GCNGC	3 cut(s)	60, 264, 380
BlsI	GCNGC	3 cut(s)	61, 265, 381
Bme1390I	CCNGG	2 cut(s)	8, 152
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	125, 390
BmrFI	CCNGG	2 cut(s)	8, 152
BmsI	GCATC	2 cut(s)	223, 365
BpiI	GAAGAC	1 cut(s)	373
BplI	GAGNNNNNCTC	4 cut(s)	68, 100, 233, 265
BpmI	CTGGAG	1 cut(s)	269
BsaHI	GRCGYC	1 cut(s)	370
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	3 cut(s)	6, 333, 392
Bsc4I	CCNNNNNNNGG	5 cut(s)	73, 76, 93, 120, 157
Bse1I	ACTGG	2 cut(s)	108, 286
BseBI	CCWGG	2 cut(s)	8, 152
BseDI	CCNNGG	3 cut(s)	6, 333, 392
BseGI	GGATG	3 cut(s)	160, 166, 450
BseLI	CCNNNNNNNGG	5 cut(s)	73, 76, 93, 120, 157
BseMII	CTCAG	2 cut(s)	207, 281
BseNI	ACTGG	2 cut(s)	108, 286
BseRI	GAGGAG	1 cut(s)	33
BseXI	GCAGC	3 cut(s)	46, 250, 366
BseYI	CCCAGC	1 cut(s)	236
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	123
BslFI	GGGAC	2 cut(s)	357, 426
BslI	CCNNNNNNNGG	5 cut(s)	73, 76, 93, 120, 157
BsmAI	GTCTC	1 cut(s)	212
BsmFI	GGGAC	2 cut(s)	357, 426
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	212
Bsp143I	GATC	2 cut(s)	20, 226
BspACI	CCGC	3 cut(s)	57, 67, 445
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	208, 280
BspHI	TCATGA	1 cut(s)	181
BspLI	GGNNCC	2 cut(s)	125, 390
BspT107I	GGYRCC	1 cut(s)	123
BspTNI	GGTCTC	1 cut(s)	212
BsrI	ACTGG	2 cut(s)	108, 286
BssECI	CCNNGG	3 cut(s)	6, 333, 392
BssMI	GATC	2 cut(s)	20, 226
BssNI	GRCGYC	1 cut(s)	370
BssT1I	CCWWGG	1 cut(s)	392
Bst2UI	CCWGG	2 cut(s)	8, 152
Bst4CI	ACNGT	1 cut(s)	337
Bst6I	CTCTTC	1 cut(s)	270
BstACI	GRCGYC	1 cut(s)	370
BstC8I	GCNNGC	1 cut(s)	414
BstDEI	CTNAG	3 cut(s)	140, 216, 267
BstDSI	CCRYGG	1 cut(s)	333
BstEII	GGTNACC	1 cut(s)	106
BstF5I	GGATG	3 cut(s)	160, 166, 450
BstKTI	GATC	2 cut(s)	23, 229
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	2 cut(s)	20, 226
BstMWI	GCNNNNNNNGC	2 cut(s)	388, 444
BstNI	CCWGG	2 cut(s)	8, 152
BstPI	GGTNACC	1 cut(s)	106
BstSCI	CCNGG	2 cut(s)	6, 150
BstV1I	GCAGC	3 cut(s)	46, 250, 366
BstV2I	GAAGAC	1 cut(s)	373
BstXI	CCANNNNNNTGG	1 cut(s)	382
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	333
BtsCI	GGATG	3 cut(s)	160, 166, 450
Cac8I	GCNNGC	1 cut(s)	414
CciI	TCATGA	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	3 cut(s)	120, 128, 182
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	3 cut(s)	140, 216, 267
DpnI	GATC	2 cut(s)	22, 228
DpnII	GATC	2 cut(s)	20, 226
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
EciI	GGCGGA	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	392
Eco31I	GGTCTC	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	362
Eco91I	GGTNACC	1 cut(s)	106
EcoO65I	GGTNACC	1 cut(s)	106
EcoRII	CCWGG	2 cut(s)	6, 150
EcoT14I	CCWWGG	1 cut(s)	392
ErhI	CCWWGG	1 cut(s)	392
FaeI	CATG	3 cut(s)	123, 131, 185
FaiI	YATR	6 cut(s)	121, 129, 171, 183, 192, 402
FalI	AAGNNNNNCTT	2 cut(s)	10, 42
FaqI	GGGAC	2 cut(s)	357, 426
FatI	CATG	3 cut(s)	119, 127, 181
FauI	CCCGC	2 cut(s)	64, 452
FblI	GTMKAC	1 cut(s)	290
Fnu4HI	GCNGC	3 cut(s)	60, 264, 380
FokI	GGATG	3 cut(s)	167, 173, 437
Fsp4HI	GCNGC	3 cut(s)	60, 264, 380
GluI	GCNGC	3 cut(s)	60, 264, 380
GsaI	CCCAGC	1 cut(s)	240
GsuI	CTGGAG	1 cut(s)	269
HaeIII	GGCC	1 cut(s)	5
Hin1I	GRCGYC	1 cut(s)	370
Hin1II	CATG	3 cut(s)	123, 131, 185
HincII	GTYRAC	1 cut(s)	291
HindII	GTYRAC	1 cut(s)	291
HinfI	GANTC	3 cut(s)	31, 292, 427
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188I	TCNGA	3 cut(s)	147, 342, 361
Hpy188III	TCNNGA	3 cut(s)	15, 182, 230
Hpy8I	GTNNAC	1 cut(s)	291
HpyAV	CCTTC	1 cut(s)	356
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4IV	ACGT	1 cut(s)	370
HpyCH4V	TGCA	3 cut(s)	314, 404, 438
HpyF10VI	GCNNNNNNNGC	2 cut(s)	388, 444
HpyF3I	CTNAG	3 cut(s)	140, 216, 267
HpySE526I	ACGT	1 cut(s)	370
Hsp92I	GRCGYC	1 cut(s)	370
Hsp92II	CATG	3 cut(s)	123, 131, 185
KpnI	GGTACC	1 cut(s)	127
Kzo9I	GATC	2 cut(s)	20, 226
LmnI	GCTCC	2 cut(s)	46, 388
Lsp1109I	GCAGC	3 cut(s)	46, 250, 366
LweI	GCATC	2 cut(s)	223, 365
MaeII	ACGT	1 cut(s)	370
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	2 cut(s)	22, 228
MboI	GATC	2 cut(s)	20, 226
MboII	GAAGA	4 cut(s)	30, 287, 355, 378
MluCI	AATT	2 cut(s)	253, 346
MlyI	GAGTC	2 cut(s)	286, 436
MnlI	CCTC	6 cut(s)	54, 70, 124, 151, 235, 293
MspA1I	CMGCKG	1 cut(s)	59
MspR9I	CCNGG	2 cut(s)	8, 152
MvaI	CCWGG	2 cut(s)	8, 152
MwoI	GCNNNNNNNGC	2 cut(s)	388, 444
NdeII	GATC	2 cut(s)	20, 226
NlaIII	CATG	3 cut(s)	123, 131, 185
NlaIV	GGNNCC	2 cut(s)	125, 390
NmuCI	GTSAC	1 cut(s)	106
PagI	TCATGA	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	31
PkrI	GCNGC	3 cut(s)	61, 265, 381
PleI	GAGTC	2 cut(s)	286, 435
PpsI	GAGTC	2 cut(s)	286, 435
Psp6I	CCWGG	2 cut(s)	6, 150
PspEI	GGTNACC	1 cut(s)	106
PspFI	CCCAGC	1 cut(s)	236
PspGI	CCWGG	2 cut(s)	6, 150
PspN4I	GGNNCC	2 cut(s)	125, 390
PspPI	GGNCC	1 cut(s)	4
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SalI	GTCGAC	1 cut(s)	289
SatI	GCNGC	3 cut(s)	60, 264, 380
Sau3AI	GATC	2 cut(s)	20, 226
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	286, 436
ScrFI	CCNGG	2 cut(s)	8, 152
SetI	ASST	5 cut(s)	116, 224, 265, 373, 381
SfaNI	GCATC	2 cut(s)	223, 365
Sse9I	AATT	2 cut(s)	253, 346
SsiI	CCGC	3 cut(s)	57, 67, 445
StyD4I	CCNGG	2 cut(s)	6, 150
StyI	CCWWGG	1 cut(s)	392
TaaI	ACNGT	1 cut(s)	337
TaiI	ACGT	1 cut(s)	373
TaqI	TCGA	2 cut(s)	231, 290
TasI	AATT	2 cut(s)	253, 346
TfiI	GAWTC	1 cut(s)	31
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	3 cut(s)	59, 263, 379
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	1 cut(s)	439
XapI	RAATTY	1 cut(s)	346
XcmI	CCANNNNNNNNNTGG	2 cut(s)	158, 382
XmiI	GTMKAC	1 cut(s)	290
ZraI	GACGTC	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.