Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006307

Physical Location & Seq

Genomic Coordinates Reverse (-)

36239779 .. 36240358

Gene Structure 580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018791

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCCCTGGTTTCAGGAAGATCAACATTGAATCCGAATGCTCCTCTCTTTGTCCCCGCTGCCTTCCGCCAAGCGGAAGATTTCTCCCCTGAATGGTGGCAACTGAACCAGGATGAGGATGGTTTCTATGATAATGCTCAGGAAAACTATGACAATGTAGCCGATTTGCTTCCTGAGACCTTTGATCTCGATGCTGGAGAGGACTTCTCTAATTTTGAAGCTGCTCAGTTTGAAGAGTTCCTCCAGTCGTCTCAAACAGAAGGTAAAAATGCAGGGTTAGATATGAGTGCTGCAGTTCTGAAGAATTTGAAAGCATCAGAAGATAGACGTGCCAAGTTGCTGGTGGAGCCAACGAAGTATACAGAGAAGCCAACCAAGCTTGTGAGTCCAAAATGCAGCCCCCGCTTCATCCAGCAGCCTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009642 GO:0009644 GO:0010035 GO:0042221 GO:0043207 GO:0044424 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2

Protein Analysis

142

Amino Acids

15.9

Weight (kDa)

4.43

Isoelectric Point (pI)

62.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41430 AT2G41430 AT2G41430 AT2G41430 AT2G41430
fragaria_vesca	FvH4_6g24790 FvH4_6g24790
malus_domestica	MD14G1081500.v1.1
prunus_persica	Prupe.7G049200_v2.0.a1 Prupe.7G049200_v2.0.a1
pyrus_communis	pycom12g07430 pycom14g07080
rosa_chinensis	RchiOBHm_Chr2g0124241
rosa_laevigata	RLG00000018791 RLG00000018799
rosa_multiflora	Rmu_co8344463.1_g000001 Rmu_sc0002968.1_g000006 Rmu_sc0005472.1_g000018
rosa_roxburghii	Rroxscaffold_2G00120020
rosa_rugosa	Rorug02G0250400 Rorug02G0250400 Rorug02G0250500.1
rosa_samantha	Rh2BG317800 Rh2CG296200 Rh2CG301200 Rh2DG333300
rosa_wichuraiana	Rw2G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	359
AciI	CCGC	4 cut(s)	57, 67, 74, 403
AcsI	RAATTY	1 cut(s)	304
AcuI	CTGAAG	1 cut(s)	320
AfiI	CCNNNNNNNGG	3 cut(s)	73, 93, 115
AgsI	TTSAA	4 cut(s)	31, 218, 233, 310
AjiI	CACGTC	1 cut(s)	329
AjnI	CCWGG	2 cut(s)	6, 108
AluBI	AGCT	2 cut(s)	221, 379
AluI	AGCT	2 cut(s)	221, 379
Alw26I	GTCTC	2 cut(s)	170, 255
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	5 cut(s)	59, 221, 290, 396, 415
ApoI	RAATTY	1 cut(s)	304
AspS9I	GGNCC	1 cut(s)	4
BbvI	GCAGC	4 cut(s)	46, 208, 277, 408
BccI	CCATC	1 cut(s)	113
BciT130I	CCWGG	2 cut(s)	8, 110
BcoDI	GTCTC	2 cut(s)	170, 255
BfmI	CTRYAG	1 cut(s)	291
BisI	GCNGC	5 cut(s)	60, 222, 291, 397, 416
BlsI	GCNGC	5 cut(s)	61, 223, 292, 398, 417
Bme1390I	CCNGG	2 cut(s)	8, 110
BmgBI	CACGTC	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	348
BmrFI	CCNGG	2 cut(s)	8, 110
BmsI	GCATC	2 cut(s)	181, 323
BplI	GAGNNNNNCTC	2 cut(s)	191, 223
BpmI	CTGGAG	2 cut(s)	216, 227
Bpu10I	CCTNAGC	1 cut(s)	138
BsaI	GGTCTC	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	6
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 93, 115
Bse1I	ACTGG	1 cut(s)	244
BseBI	CCWGG	2 cut(s)	8, 110
BseDI	CCNNGG	1 cut(s)	6
BseGI	GGATG	3 cut(s)	118, 124, 408
BseLI	CCNNNNNNNGG	3 cut(s)	73, 93, 115
BseMII	CTCAG	3 cut(s)	152, 165, 239
BseNI	ACTGG	1 cut(s)	244
BseRI	GAGGAG	1 cut(s)	33
BseXI	GCAGC	4 cut(s)	46, 208, 277, 408
BshFI	GGCC	1 cut(s)	5
BslFI	GGGAC	1 cut(s)	38
BslI	CCNNNNNNNGG	3 cut(s)	73, 93, 115
BsmAI	GTCTC	2 cut(s)	170, 255
BsmBI	CGTCTC	1 cut(s)	255
BsmFI	GGGAC	1 cut(s)	38
BsmI	GAATGC	1 cut(s)	43
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	170
Bsp143I	GATC	2 cut(s)	20, 184
BspACI	CCGC	4 cut(s)	57, 67, 74, 403
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	151, 166, 238
BspLI	GGNNCC	1 cut(s)	348
BspMAI	CTGCAG	1 cut(s)	295
BspTNI	GGTCTC	1 cut(s)	170
BsrI	ACTGG	1 cut(s)	244
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	2 cut(s)	20, 184
BssNAI	GTATAC	1 cut(s)	360
Bst1107I	GTATAC	1 cut(s)	360
Bst2UI	CCWGG	2 cut(s)	8, 110
Bst6I	CTCTTC	1 cut(s)	228
BstDEI	CTNAG	3 cut(s)	138, 174, 225
BstF5I	GGATG	3 cut(s)	118, 124, 408
BstKTI	GATC	2 cut(s)	23, 187
BstMAI	GTCTC	2 cut(s)	170, 255
BstMBI	GATC	2 cut(s)	20, 184
BstMWI	GCNNNNNNNGC	3 cut(s)	346, 376, 402
BstNI	CCWGG	2 cut(s)	8, 110
BstSCI	CCNGG	2 cut(s)	6, 108
BstSFI	CTRYAG	1 cut(s)	291
BstV1I	GCAGC	4 cut(s)	46, 208, 277, 408
BstXI	CCANNNNNNTGG	1 cut(s)	340
BstZ17I	GTATAC	1 cut(s)	360
BsuRI	GGCC	1 cut(s)	5
BtrI	CACGTC	1 cut(s)	329
BtsCI	GGATG	3 cut(s)	118, 124, 408
Cfr13I	GGNCC	1 cut(s)	4
CviJI	RGCY	8 cut(s)	5, 161, 221, 349, 370, 379, 399, 418
CviKI_1	RGCY	8 cut(s)	5, 161, 221, 349, 370, 379, 399, 418
DdeI	CTNAG	3 cut(s)	138, 174, 225
DpnI	GATC	2 cut(s)	22, 186
DpnII	GATC	2 cut(s)	20, 184
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
EciI	GGCGGA	1 cut(s)	56
Eco31I	GGTCTC	1 cut(s)	170
Eco57I	CTGAAG	1 cut(s)	320
EcoRII	CCWGG	2 cut(s)	6, 108
Esp3I	CGTCTC	1 cut(s)	255
FaiI	YATR	4 cut(s)	129, 150, 284, 360
FaqI	GGGAC	1 cut(s)	38
FauI	CCCGC	2 cut(s)	64, 410
FblI	GTMKAC	1 cut(s)	359
Fnu4HI	GCNGC	5 cut(s)	60, 222, 291, 397, 416
FokI	GGATG	3 cut(s)	125, 131, 395
Fsp4HI	GCNGC	5 cut(s)	60, 222, 291, 397, 416
GluI	GCNGC	5 cut(s)	60, 222, 291, 397, 416
GsuI	CTGGAG	2 cut(s)	216, 227
HaeIII	GGCC	1 cut(s)	5
HindIII	AAGCTT	1 cut(s)	377
HinfI	GANTC	2 cut(s)	31, 385
Hpy166II	GTNNAC	1 cut(s)	360
Hpy188I	TCNGA	3 cut(s)	36, 300, 319
Hpy188III	TCNNGA	4 cut(s)	15, 140, 173, 188
Hpy8I	GTNNAC	1 cut(s)	360
HpyAV	CCTTC	2 cut(s)	73, 254
HpyCH4IV	ACGT	1 cut(s)	328
HpyCH4V	TGCA	3 cut(s)	272, 293, 396
HpyF10VI	GCNNNNNNNGC	3 cut(s)	346, 376, 402
HpyF3I	CTNAG	3 cut(s)	138, 174, 225
HpySE526I	ACGT	1 cut(s)	328
Kzo9I	GATC	2 cut(s)	20, 184
LmnI	GCTCC	2 cut(s)	46, 346
Lsp1109I	GCAGC	4 cut(s)	46, 208, 277, 408
LweI	GCATC	2 cut(s)	181, 323
MaeII	ACGT	1 cut(s)	328
MalI	GATC	2 cut(s)	22, 186
MboI	GATC	2 cut(s)	20, 184
MboII	GAAGA	5 cut(s)	30, 89, 245, 313, 332
MluCI	AATT	2 cut(s)	211, 304
MlyI	GAGTC	1 cut(s)	394
MnlI	CCTC	4 cut(s)	54, 109, 193, 251
MspA1I	CMGCKG	1 cut(s)	59
MspR9I	CCNGG	2 cut(s)	8, 110
Mva1269I	GAATGC	1 cut(s)	43
MvaI	CCWGG	2 cut(s)	8, 110
MwoI	GCNNNNNNNGC	3 cut(s)	346, 376, 402
NdeII	GATC	2 cut(s)	20, 184
NlaIV	GGNNCC	1 cut(s)	348
PctI	GAATGC	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	31
PkrI	GCNGC	5 cut(s)	61, 223, 292, 398, 417
PleI	GAGTC	1 cut(s)	393
PpsI	GAGTC	1 cut(s)	393
Psp6I	CCWGG	2 cut(s)	6, 108
PspGI	CCWGG	2 cut(s)	6, 108
PspN4I	GGNNCC	1 cut(s)	348
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	295
SatI	GCNGC	5 cut(s)	60, 222, 291, 397, 416
Sau3AI	GATC	2 cut(s)	20, 184
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	394
ScrFI	CCNGG	2 cut(s)	8, 110
SetI	ASST	5 cut(s)	182, 223, 265, 331, 381
SfaNI	GCATC	2 cut(s)	181, 323
SfcI	CTRYAG	1 cut(s)	291
Sse9I	AATT	2 cut(s)	211, 304
SsiI	CCGC	4 cut(s)	57, 67, 74, 403
StyD4I	CCNGG	2 cut(s)	6, 108
TaiI	ACGT	1 cut(s)	331
TaqI	TCGA	1 cut(s)	189
TasI	AATT	2 cut(s)	211, 304
TfiI	GAWTC	1 cut(s)	31
TseI	GCWGC	5 cut(s)	59, 221, 290, 396, 415
TspDTI	ATGAA	1 cut(s)	397
XapI	RAATTY	1 cut(s)	304
XcmI	CCANNNNNNNNNTGG	2 cut(s)	116, 340
XmiI	GTMKAC	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.