Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006307

Physical Location & Seq

Genomic Coordinates Forward (+)

52102592 .. 52105441

Gene Structure 2850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00120020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCGAGGAAGGAAAGTCTGGTCCCACCACTAAAACACGCTTGGCTTGTGTCGTTGCTAAAGATGGCCCTGGTTTCAGGAAGATCAACATTGAATCCGAATGCTCCGCTCTTTGTCCCCGCTGCTTTCCGCCAAGTGGAAGATTTCTCTCCTGAATGGTGGCAACTGGTCACCACCTCTACATGGTACCATGAATATTGGCTCAGTCAGAACCAGGATGAGGATGGTTTCTATGATAATGCTCAGGAAAACTATGACAATGTAGCCGATTTGCTTCCTGAGACCTTTGATCTCGATGCTGGAGAGGACTTCTCTAATTTTGAAGCAGCTCAGTTTGAAGAGTTCCTCCAGTCGTCTCAAACTGAAGGTAAAAATGGGTTAGATATGAGTGCTGCAGTTCTGAAGAATTTGAAAGCATCAGAAGATAGACGTCCCAAGTTGCTGGTGGAGCCAACGAAGTATGCAGAGAAGCCAGCCAAGTTTGTGAGTCCAAAATGCAGCCCCCGCTTCATCCAGCAACCTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009642 GO:0009644 GO:0010035 GO:0042221 GO:0043207 GO:0044424 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2

Protein Analysis

175

Amino Acids

20.04

Weight (kDa)

4.82

Isoelectric Point (pI)

60.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41430 AT2G41430 AT2G41430 AT2G41430 AT2G41430
fragaria_vesca	FvH4_6g24790 FvH4_6g24790
malus_domestica	MD14G1081500.v1.1
prunus_persica	Prupe.7G049200_v2.0.a1 Prupe.7G049200_v2.0.a1
pyrus_communis	pycom12g07430 pycom14g07080
rosa_chinensis	RchiOBHm_Chr2g0124241
rosa_laevigata	RLG00000018791 RLG00000018799
rosa_multiflora	Rmu_co8344463.1_g000001 Rmu_sc0002968.1_g000006 Rmu_sc0005472.1_g000018
rosa_roxburghii	Rroxscaffold_2G00120020
rosa_rugosa	Rorug02G0250400 Rorug02G0250400 Rorug02G0250500.1
rosa_samantha	Rh2BG317800 Rh2CG296200 Rh2CG301200 Rh2DG333300
rosa_wichuraiana	Rw2G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	433
Acc65I	GGTACC	1 cut(s)	186
AccB1I	GGYRCC	1 cut(s)	186
AccBSI	CCGCTC	1 cut(s)	109
AciI	CCGC	4 cut(s)	107, 120, 130, 505
AcsI	RAATTY	1 cut(s)	406
AcuI	CTGAAG	2 cut(s)	384, 422
AcyI	GRCGYC	1 cut(s)	430
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	3 cut(s)	136, 183, 220
AgsI	TTSAA	4 cut(s)	94, 323, 338, 412
AjnI	CCWGG	2 cut(s)	69, 213
AluBI	AGCT	1 cut(s)	329
AluI	AGCT	1 cut(s)	329
Alw26I	GTCTC	2 cut(s)	275, 360
AoxI	GGCC	1 cut(s)	66
ApeKI	GCWGC	4 cut(s)	122, 326, 392, 498
ApoI	RAATTY	1 cut(s)	406
Asp718I	GGTACC	1 cut(s)	186
AspS9I	GGNCC	2 cut(s)	22, 67
AsuHPI	GGTGA	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	22
BanI	GGYRCC	1 cut(s)	186
BbvI	GCAGC	4 cut(s)	109, 338, 379, 510
BccI	CCATC	2 cut(s)	58, 218
BciT130I	CCWGG	2 cut(s)	71, 215
BcoDI	GTCTC	2 cut(s)	275, 360
BfmI	CTRYAG	1 cut(s)	393
BisI	GCNGC	4 cut(s)	123, 327, 393, 499
BlsI	GCNGC	4 cut(s)	124, 328, 394, 500
Bme1390I	CCNGG	2 cut(s)	71, 215
Bme18I	GGWCC	1 cut(s)	22
BmgT120I	GGNCC	2 cut(s)	22, 67
BmiI	GGNNCC	3 cut(s)	24, 188, 450
BmrFI	CCNGG	2 cut(s)	71, 215
BmsI	GCATC	2 cut(s)	286, 425
BplI	GAGNNNNNCTC	2 cut(s)	296, 328
BpmI	CTGGAG	2 cut(s)	321, 332
Bpu10I	CCTNAGC	1 cut(s)	243
BsaHI	GRCGYC	1 cut(s)	430
BsaI	GGTCTC	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	3 cut(s)	136, 183, 220
Bse1I	ACTGG	2 cut(s)	171, 349
BseBI	CCWGG	2 cut(s)	71, 215
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	3 cut(s)	223, 229, 510
BseLI	CCNNNNNNNGG	3 cut(s)	136, 183, 220
BseMII	CTCAG	4 cut(s)	217, 257, 270, 344
BseNI	ACTGG	2 cut(s)	171, 349
BseXI	GCAGC	4 cut(s)	109, 338, 379, 510
BshFI	GGCC	1 cut(s)	68
BshNI	GGYRCC	1 cut(s)	186
BslFI	GGGAC	3 cut(s)	8, 101, 417
BslI	CCNNNNNNNGG	3 cut(s)	136, 183, 220
BsmAI	GTCTC	2 cut(s)	275, 360
BsmBI	CGTCTC	1 cut(s)	360
BsmFI	GGGAC	3 cut(s)	8, 101, 417
BsmI	GAATGC	1 cut(s)	106
BsnI	GGCC	1 cut(s)	68
Bso31I	GGTCTC	1 cut(s)	275
Bsp143I	GATC	2 cut(s)	83, 289
BspACI	CCGC	4 cut(s)	107, 120, 130, 505
BspANI	GGCC	1 cut(s)	68
BspCNI	CTCAG	4 cut(s)	216, 256, 271, 343
BspLI	GGNNCC	3 cut(s)	24, 188, 450
BspMAI	CTGCAG	1 cut(s)	397
BspT107I	GGYRCC	1 cut(s)	186
BspTNI	GGTCTC	1 cut(s)	275
BsrBI	CCGCTC	1 cut(s)	109
BsrI	ACTGG	2 cut(s)	171, 349
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	2 cut(s)	83, 289
BssNI	GRCGYC	1 cut(s)	430
Bst2UI	CCWGG	2 cut(s)	71, 215
Bst6I	CTCTTC	1 cut(s)	333
BstACI	GRCGYC	1 cut(s)	430
BstC8I	GCNNGC	1 cut(s)	474
BstDEI	CTNAG	4 cut(s)	203, 243, 279, 330
BstEII	GGTNACC	1 cut(s)	169
BstF5I	GGATG	3 cut(s)	223, 229, 510
BstKTI	GATC	2 cut(s)	86, 292
BstMAI	GTCTC	2 cut(s)	275, 360
BstMBI	GATC	2 cut(s)	83, 289
BstMWI	GCNNNNNNNGC	2 cut(s)	448, 504
BstNI	CCWGG	2 cut(s)	71, 215
BstPI	GGTNACC	1 cut(s)	169
BstSCI	CCNGG	2 cut(s)	69, 213
BstSFI	CTRYAG	1 cut(s)	393
BstV1I	GCAGC	4 cut(s)	109, 338, 379, 510
BstXI	CCANNNNNNTGG	1 cut(s)	442
BsuRI	GGCC	1 cut(s)	68
BtsCI	GGATG	3 cut(s)	223, 229, 510
Cac8I	GCNNGC	1 cut(s)	474
Cfr13I	GGNCC	2 cut(s)	22, 67
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	2 cut(s)	183, 191
CviJI	RGCY	9 cut(s)	46, 68, 202, 266, 329, 451, 472, 476, 501
CviKI_1	RGCY	9 cut(s)	46, 68, 202, 266, 329, 451, 472, 476, 501
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	4 cut(s)	203, 243, 279, 330
DpnI	GATC	2 cut(s)	85, 291
DpnII	GATC	2 cut(s)	83, 289
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
EciI	GGCGGA	1 cut(s)	119
Eco31I	GGTCTC	1 cut(s)	275
Eco47I	GGWCC	1 cut(s)	22
Eco57I	CTGAAG	2 cut(s)	384, 422
Eco91I	GGTNACC	1 cut(s)	169
EcoO65I	GGTNACC	1 cut(s)	169
EcoRII	CCWGG	2 cut(s)	69, 213
Esp3I	CGTCTC	1 cut(s)	360
FaeI	CATG	2 cut(s)	186, 194
FaiI	YATR	6 cut(s)	184, 192, 234, 255, 386, 462
FaqI	GGGAC	3 cut(s)	8, 101, 417
FatI	CATG	2 cut(s)	182, 190
FauI	CCCGC	2 cut(s)	127, 512
Fnu4HI	GCNGC	4 cut(s)	123, 327, 393, 499
FokI	GGATG	3 cut(s)	230, 236, 497
Fsp4HI	GCNGC	4 cut(s)	123, 327, 393, 499
GluI	GCNGC	4 cut(s)	123, 327, 393, 499
GsuI	CTGGAG	2 cut(s)	321, 332
HaeIII	GGCC	1 cut(s)	68
Hin1I	GRCGYC	1 cut(s)	430
Hin1II	CATG	2 cut(s)	186, 194
HinfI	GANTC	2 cut(s)	94, 487
HphI	GGTGA	1 cut(s)	163
Hpy188I	TCNGA	4 cut(s)	99, 210, 402, 421
Hpy188III	TCNNGA	5 cut(s)	78, 152, 245, 278, 293
HpyAV	CCTTC	2 cut(s)	4, 359
HpyCH4IV	ACGT	1 cut(s)	430
HpyCH4V	TGCA	3 cut(s)	395, 464, 498
HpyF10VI	GCNNNNNNNGC	2 cut(s)	448, 504
HpyF3I	CTNAG	4 cut(s)	203, 243, 279, 330
HpySE526I	ACGT	1 cut(s)	430
Hsp92I	GRCGYC	1 cut(s)	430
Hsp92II	CATG	2 cut(s)	186, 194
KpnI	GGTACC	1 cut(s)	190
Kzo9I	GATC	2 cut(s)	83, 289
LmnI	GCTCC	2 cut(s)	109, 448
Lsp1109I	GCAGC	4 cut(s)	109, 338, 379, 510
LweI	GCATC	2 cut(s)	286, 425
MaeII	ACGT	1 cut(s)	430
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	2 cut(s)	85, 291
MbiI	CCGCTC	1 cut(s)	109
MboI	GATC	2 cut(s)	83, 289
MboII	GAAGA	5 cut(s)	93, 152, 350, 415, 434
MluCI	AATT	2 cut(s)	316, 406
MlyI	GAGTC	1 cut(s)	496
MnlI	CCTC	4 cut(s)	187, 214, 298, 356
MspA1I	CMGCKG	1 cut(s)	122
MspR9I	CCNGG	2 cut(s)	71, 215
Mva1269I	GAATGC	1 cut(s)	106
MvaI	CCWGG	2 cut(s)	71, 215
MwoI	GCNNNNNNNGC	2 cut(s)	448, 504
NdeII	GATC	2 cut(s)	83, 289
NlaIII	CATG	2 cut(s)	186, 194
NlaIV	GGNNCC	3 cut(s)	24, 188, 450
NmuCI	GTSAC	1 cut(s)	169
PctI	GAATGC	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	94
PkrI	GCNGC	4 cut(s)	124, 328, 394, 500
PleI	GAGTC	1 cut(s)	495
PpsI	GAGTC	1 cut(s)	495
Psp6I	CCWGG	2 cut(s)	69, 213
PspEI	GGTNACC	1 cut(s)	169
PspGI	CCWGG	2 cut(s)	69, 213
PspN4I	GGNNCC	3 cut(s)	24, 188, 450
PspPI	GGNCC	2 cut(s)	22, 67
PstI	CTGCAG	1 cut(s)	397
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SatI	GCNGC	4 cut(s)	123, 327, 393, 499
Sau3AI	GATC	2 cut(s)	83, 289
Sau96I	GGNCC	2 cut(s)	22, 67
SchI	GAGTC	1 cut(s)	496
ScrFI	CCNGG	2 cut(s)	71, 215
SetI	ASST	6 cut(s)	179, 287, 331, 370, 433, 523
SfaNI	GCATC	2 cut(s)	286, 425
SfcI	CTRYAG	1 cut(s)	393
SinI	GGWCC	1 cut(s)	22
Sse9I	AATT	2 cut(s)	316, 406
SsiI	CCGC	4 cut(s)	107, 120, 130, 505
SspI	AATATT	1 cut(s)	197
StyD4I	CCNGG	2 cut(s)	69, 213
TaiI	ACGT	1 cut(s)	433
TaqI	TCGA	1 cut(s)	294
TasI	AATT	2 cut(s)	316, 406
TfiI	GAWTC	1 cut(s)	94
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	4 cut(s)	122, 326, 392, 498
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	2 cut(s)	207, 499
VpaK11BI	GGWCC	1 cut(s)	22
XapI	RAATTY	1 cut(s)	406
XcmI	CCANNNNNNNNNTGG	2 cut(s)	221, 442
ZraI	GACGTC	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.