Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0006307

Physical Location & Seq

Genomic Coordinates Reverse (-)

7763202 .. 7764943

Gene Structure 1742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g07430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGTTACATTGTTTTTGAGGTGGCATTCGTTGGGTCGGAGTACCCGAACCTCAGGTTCAAATTCCAAACCAGCTAGGCTCGGATTTCTCTCACTATATAAACCCCCTTCCCCTATCTTTCCCACTCACACGTATTTATCGCTCTCTGGTCGGACCCTTTACCTGATATTTCGCAGCCTGATATTTTCCTCTTCGCTCGAAGCCTCGGAGGAGTTGACTTGCGCTCGGCCAAAGATGGCACTGGTTTCCGGAGGATCAAGGTTGAATCCCAATGCCCCTCTCTTCATCCCTGTGGCTCTGCGACAGGTGGAGGATTTCTCCCCGGAATGGTGGCAACTGGTCACAACCTCCACATGGTACCATGATTACTGGCTCAGTCAACAGGGTGAGGATGGCTTCTATGATAATACCCAGAATGAAGTTGACAATGTCGCCGATTTGCTTCCAGAGACCTTTGATCTCGATGTTGGTGATGACTTCTCCAGTCTAGAAGAATCTCAGTTTGAAGAGTTCCTTCAGATGTCTCATACTGAAGGTAAAAATGCAGCGGGGTTAGAAAAGAGTGCTGCGGTCTTGAAGAATTTGAAGTCACTGGAGGACAGACATCCTAAATCCCCGGTGGAGCTGAGGAAGTACGCTGAGAAGCCAGCAAAGCATGTGAGCCCGAAATGCAGCCCCCGTTTCATCCAGCAGCCTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009642 GO:0009644 GO:0010035 GO:0042221 GO:0043207 GO:0044424 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2

Protein Analysis

234

Amino Acids

26.42

Weight (kDa)

6.09

Isoelectric Point (pI)

58.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41430 AT2G41430 AT2G41430 AT2G41430 AT2G41430
fragaria_vesca	FvH4_6g24790 FvH4_6g24790
malus_domestica	MD14G1081500.v1.1
prunus_persica	Prupe.7G049200_v2.0.a1 Prupe.7G049200_v2.0.a1
pyrus_communis	pycom12g07430 pycom14g07080
rosa_chinensis	RchiOBHm_Chr2g0124241
rosa_laevigata	RLG00000018791 RLG00000018799
rosa_multiflora	Rmu_co8344463.1_g000001 Rmu_sc0002968.1_g000006 Rmu_sc0005472.1_g000018
rosa_roxburghii	Rroxscaffold_2G00120020
rosa_rugosa	Rorug02G0250400 Rorug02G0250400 Rorug02G0250500.1
rosa_samantha	Rh2BG317800 Rh2CG296200 Rh2CG301200 Rh2DG333300
rosa_wichuraiana	Rw2G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	357
AccB1I	GGYRCC	1 cut(s)	357
AccIII	TCCGGA	1 cut(s)	248
AciI	CCGC	2 cut(s)	548, 569
AclWI	GGATC	1 cut(s)	262
AcoI	YGGCCR	1 cut(s)	227
AcsI	RAATTY	2 cut(s)	61, 580
AcuI	CTGAAG	2 cut(s)	500, 552
AfaI	GTAC	3 cut(s)	43, 359, 635
AfiI	CCNNNNNNNGG	2 cut(s)	327, 354
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	5 cut(s)	60, 265, 506, 577, 586
AluBI	AGCT	2 cut(s)	74, 625
AluI	AGCT	2 cut(s)	74, 625
Alw26I	GTCTC	2 cut(s)	443, 528
AlwI	GGATC	1 cut(s)	262
Aor13HI	TCCGGA	1 cut(s)	248
AoxI	GGCC	1 cut(s)	227
ApeKI	GCWGC	5 cut(s)	174, 545, 566, 672, 691
ApoI	RAATTY	2 cut(s)	61, 580
Asp718I	GGTACC	1 cut(s)	357
AspLEI	GCGC	1 cut(s)	224
AspS9I	GGNCC	1 cut(s)	153
AsuC2I	CCSGG	2 cut(s)	323, 617
AsuHPI	GGTGA	2 cut(s)	398, 482
AvaII	GGWCC	1 cut(s)	153
AxyI	CCTNAGG	1 cut(s)	52
BanI	GGYRCC	1 cut(s)	357
BanII	GRGCYC	1 cut(s)	665
BbvCI	CCTCAGC	1 cut(s)	626
BbvI	GCAGC	4 cut(s)	186, 553, 557, 684
BccI	CCATC	2 cut(s)	229, 386
BcnI	CCSGG	2 cut(s)	323, 617
BcoDI	GTCTC	2 cut(s)	443, 528
BfaI	CTAG	2 cut(s)	75, 488
BisI	GCNGC	5 cut(s)	175, 546, 567, 673, 692
BlsI	GCNGC	5 cut(s)	176, 547, 568, 674, 693
Bme1390I	CCNGG	2 cut(s)	323, 617
Bme18I	GGWCC	1 cut(s)	153
BmgT120I	GGNCC	1 cut(s)	153
BmiI	GGNNCC	2 cut(s)	155, 359
BmrFI	CCNGG	2 cut(s)	323, 617
BplI	GAGNNNNNCTC	2 cut(s)	302, 334
BpmI	CTGGAG	2 cut(s)	466, 614
Bpu10I	CCTNAGC	1 cut(s)	626
BpuMI	CCSGG	2 cut(s)	323, 617
BsaAI	YACGTR	1 cut(s)	132
BsaI	GGTCTC	1 cut(s)	443
BsaJI	CCNNGG	3 cut(s)	204, 321, 615
BsaWI	WCCGGW	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	2 cut(s)	327, 354
Bse1I	ACTGG	5 cut(s)	246, 342, 374, 483, 597
Bse21I	CCTNAGG	1 cut(s)	52
BseAI	TCCGGA	1 cut(s)	248
BseDI	CCNNGG	3 cut(s)	204, 321, 615
BseGI	GGATG	4 cut(s)	285, 397, 604, 684
BseLI	CCNNNNNNNGG	2 cut(s)	327, 354
BseMII	CTCAG	5 cut(s)	66, 388, 512, 617, 630
BseNI	ACTGG	5 cut(s)	246, 342, 374, 483, 597
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	4 cut(s)	186, 553, 557, 684
BshFI	GGCC	1 cut(s)	229
BshNI	GGYRCC	1 cut(s)	357
BsiSI	CCGG	3 cut(s)	249, 323, 617
BslI	CCNNNNNNNGG	2 cut(s)	327, 354
BsmAI	GTCTC	2 cut(s)	443, 528
BsmI	GAATGC	1 cut(s)	25
BsnI	GGCC	1 cut(s)	229
Bso31I	GGTCTC	1 cut(s)	443
Bsp1286I	GDGCHC	1 cut(s)	665
Bsp13I	TCCGGA	1 cut(s)	248
Bsp143I	GATC	2 cut(s)	254, 457
BspACI	CCGC	2 cut(s)	548, 569
BspANI	GGCC	1 cut(s)	229
BspCNI	CTCAG	5 cut(s)	65, 387, 511, 618, 631
BspEI	TCCGGA	1 cut(s)	248
BspLI	GGNNCC	2 cut(s)	155, 359
BspPI	GGATC	1 cut(s)	262
BspT107I	GGYRCC	1 cut(s)	357
BspTNI	GGTCTC	1 cut(s)	443
BsrI	ACTGG	5 cut(s)	246, 342, 374, 483, 597
BssECI	CCNNGG	3 cut(s)	204, 321, 615
BssMI	GATC	2 cut(s)	254, 457
Bst6I	CTCTTC	3 cut(s)	196, 287, 501
BstBAI	YACGTR	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	648
BstDEI	CTNAG	5 cut(s)	52, 374, 498, 626, 639
BstF5I	GGATG	4 cut(s)	285, 397, 604, 684
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	2 cut(s)	257, 460
BstMAI	GTCTC	2 cut(s)	443, 528
BstMBI	GATC	2 cut(s)	254, 457
BstMWI	GCNNNNNNNGC	2 cut(s)	652, 669
BstNSI	RCATGY	1 cut(s)	659
BstSCI	CCNGG	2 cut(s)	321, 615
BstV1I	GCAGC	4 cut(s)	186, 553, 557, 684
Bsu36I	CCTNAGG	1 cut(s)	52
BsuRI	GGCC	1 cut(s)	229
BtsCI	GGATG	4 cut(s)	285, 397, 604, 684
BtsIMutI	CAGTG	2 cut(s)	239, 590
Cac8I	GCNNGC	1 cut(s)	648
CfoI	GCGC	1 cut(s)	224
Cfr13I	GGNCC	1 cut(s)	153
Csp6I	GTAC	3 cut(s)	42, 358, 634
CviAII	CATG	3 cut(s)	354, 362, 656
CviQI	GTAC	3 cut(s)	42, 358, 634
DdeI	CTNAG	5 cut(s)	52, 374, 498, 626, 639
DpnI	GATC	2 cut(s)	256, 459
DpnII	GATC	2 cut(s)	254, 457
EaeI	YGGCCR	1 cut(s)	227
Eam1104I	CTCTTC	3 cut(s)	196, 287, 501
EarI	CTCTTC	3 cut(s)	196, 287, 501
Eco24I	GRGCYC	1 cut(s)	665
Eco31I	GGTCTC	1 cut(s)	443
Eco47I	GGWCC	1 cut(s)	153
Eco57I	CTGAAG	2 cut(s)	500, 552
Eco81I	CCTNAGG	1 cut(s)	52
EcoT38I	GRGCYC	1 cut(s)	665
FaeI	CATG	3 cut(s)	357, 365, 659
FaiI	YATR	7 cut(s)	97, 99, 355, 363, 402, 528, 657
FalI	AAGNNNNNCTT	2 cut(s)	498, 530
FatI	CATG	3 cut(s)	353, 361, 655
FauI	CCCGC	1 cut(s)	541
Fnu4HI	GCNGC	5 cut(s)	175, 546, 567, 673, 692
FokI	GGATG	4 cut(s)	272, 404, 591, 671
FriOI	GRGCYC	1 cut(s)	665
Fsp4HI	GCNGC	5 cut(s)	175, 546, 567, 673, 692
FspBI	CTAG	2 cut(s)	75, 488
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	5 cut(s)	175, 546, 567, 673, 692
GsuI	CTGGAG	2 cut(s)	466, 614
HaeIII	GGCC	1 cut(s)	229
HapII	CCGG	3 cut(s)	249, 323, 617
HhaI	GCGC	1 cut(s)	224
Hin1II	CATG	3 cut(s)	357, 365, 659
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HincII	GTYRAC	3 cut(s)	216, 380, 424
HindII	GTYRAC	3 cut(s)	216, 380, 424
HinfI	GANTC	2 cut(s)	265, 494
HpaII	CCGG	3 cut(s)	249, 323, 617
HphI	GGTGA	2 cut(s)	398, 482
Hpy166II	GTNNAC	3 cut(s)	216, 380, 424
Hpy188I	TCNGA	5 cut(s)	39, 83, 153, 208, 519
Hpy188III	TCNNGA	5 cut(s)	249, 446, 461, 488, 574
Hpy8I	GTNNAC	3 cut(s)	216, 380, 424
HpyAV	CCTTC	3 cut(s)	117, 524, 527
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	2 cut(s)	545, 672
HpyF10VI	GCNNNNNNNGC	2 cut(s)	652, 669
HpyF3I	CTNAG	5 cut(s)	52, 374, 498, 626, 639
HpySE526I	ACGT	1 cut(s)	131
Hsp92II	CATG	3 cut(s)	357, 365, 659
HspAI	GCGC	1 cut(s)	222
Kpn2I	TCCGGA	1 cut(s)	248
KpnI	GGTACC	1 cut(s)	361
Kzo9I	GATC	2 cut(s)	254, 457
LmnI	GCTCC	1 cut(s)	622
Lsp1109I	GCAGC	4 cut(s)	186, 553, 557, 684
MaeI	CTAG	2 cut(s)	75, 488
MaeII	ACGT	1 cut(s)	131
MaeIII	GTNAC	3 cut(s)	4, 340, 588
MalI	GATC	2 cut(s)	256, 459
MboI	GATC	2 cut(s)	254, 457
MboII	GAAGA	5 cut(s)	183, 274, 503, 518, 589
MhlI	GDGCHC	1 cut(s)	665
MluCI	AATT	2 cut(s)	61, 580
MmeI	TCCRAC	2 cut(s)	17, 131
MroI	TCCGGA	1 cut(s)	248
MslI	CAYNNNNRTG	1 cut(s)	290
MspA1I	CMGCKG	1 cut(s)	548
MspI	CCGG	3 cut(s)	249, 323, 617
MspR9I	CCNGG	2 cut(s)	323, 617
Mva1269I	GAATGC	1 cut(s)	25
MwoI	GCNNNNNNNGC	2 cut(s)	652, 669
NciI	CCSGG	2 cut(s)	323, 617
NdeII	GATC	2 cut(s)	254, 457
NlaIII	CATG	3 cut(s)	357, 365, 659
NlaIV	GGNNCC	2 cut(s)	155, 359
NmeAIII	GCCGAG	1 cut(s)	205
NmuCI	GTSAC	2 cut(s)	340, 588
NspI	RCATGY	1 cut(s)	659
PcsI	WCGNNNNNNNCGW	1 cut(s)	43
PctI	GAATGC	1 cut(s)	25
PfeI	GAWTC	2 cut(s)	265, 494
PflFI	GACNNNGTC	1 cut(s)	428
PkrI	GCNGC	5 cut(s)	176, 547, 568, 674, 693
Ppu21I	YACGTR	1 cut(s)	132
PspN4I	GGNNCC	2 cut(s)	155, 359
PspPI	GGNCC	1 cut(s)	153
PsyI	GACNNNGTC	1 cut(s)	428
RsaI	GTAC	3 cut(s)	43, 359, 635
RsaNI	GTAC	3 cut(s)	42, 358, 634
RseI	CAYNNNNRTG	1 cut(s)	290
SatI	GCNGC	5 cut(s)	175, 546, 567, 673, 692
Sau3AI	GATC	2 cut(s)	254, 457
Sau96I	GGNCC	1 cut(s)	153
ScrFI	CCNGG	2 cut(s)	323, 617
SduI	GDGCHC	1 cut(s)	665
SinI	GGWCC	1 cut(s)	153
SmiMI	CAYNNNNRTG	1 cut(s)	290
Sse9I	AATT	2 cut(s)	61, 580
SsiI	CCGC	2 cut(s)	548, 569
SspMI	CTAG	2 cut(s)	75, 488
StyD4I	CCNGG	2 cut(s)	321, 615
TaiI	ACGT	1 cut(s)	134
TaqI	TCGA	2 cut(s)	198, 462
TasI	AATT	2 cut(s)	61, 580
TfiI	GAWTC	2 cut(s)	265, 494
TscAI	CASTG	2 cut(s)	246, 597
TseFI	GTSAC	2 cut(s)	340, 588
TseI	GCWGC	5 cut(s)	174, 545, 566, 672, 691
Tsp45I	GTSAC	2 cut(s)	340, 588
TspDTI	ATGAA	3 cut(s)	274, 432, 673
TspRI	CASTG	2 cut(s)	246, 597
Tth111I	GACNNNGTC	1 cut(s)	428
VpaK11BI	GGWCC	1 cut(s)	153
XapI	RAATTY	2 cut(s)	61, 580
XbaI	TCTAGA	1 cut(s)	487
XceI	RCATGY	1 cut(s)	659
XspI	CTAG	2 cut(s)	75, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.