Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006307

Physical Location & Seq

Genomic Coordinates Reverse (-)

36417383 .. 36419140

Gene Structure 1758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018799

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAGCCTGGTTGACATGGCAGAGATCAAACGGATTGTCGTGTTGTTTGATATTTTCTCAAGTTGGCTTGTGTCGGTGCTAAAGATGGCCCTGGTTTCAGGAAGATCAACATTGAATCCGAATGCTCCTCTTTTTGTCCCTGCTGCTTTCCGCCAAGTGGAAGATTTCTCCCCTGAATGGTGGCAACTGGTCACCACCTCTACATGGTACCATGAATATTGGCTCAGTCAGAACCAGGATGAGGATGGTTTTTATGATAATGCTCAGGAAAACTATGACAATGTAGCTGATTTGCTTCCTGAGACCTTTGATCTCGATGCTGGAGAGGACTTCTCTAGTTTTGAAGCAGCTCAGTTTGAAGAGTTCCTCCAGTCGTCTCAAACTGAAGGTAAAAATGGGTTAGATATGAGTGCTGCAGTTCTGAAGAATTTGAAAGCATCGGAAGATAGACGTCCCAAGTTGCTGGTGGAGCCAAGGAAGTATGCAGAGAAGCCAGCCAAGTTTGTGAGTCCAAAATGCAGCCCCCGCTTCATCCAGCAGCCTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009642 GO:0009644 GO:0010035 GO:0042221 GO:0043207 GO:0044424 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2

Protein Analysis

183

Amino Acids

20.89

Weight (kDa)

4.61

Isoelectric Point (pI)

62.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41430 AT2G41430 AT2G41430 AT2G41430 AT2G41430
fragaria_vesca	FvH4_6g24790 FvH4_6g24790
malus_domestica	MD14G1081500.v1.1
prunus_persica	Prupe.7G049200_v2.0.a1 Prupe.7G049200_v2.0.a1
pyrus_communis	pycom12g07430 pycom14g07080
rosa_chinensis	RchiOBHm_Chr2g0124241
rosa_laevigata	RLG00000018791 RLG00000018799
rosa_multiflora	Rmu_co8344463.1_g000001 Rmu_sc0002968.1_g000006 Rmu_sc0005472.1_g000018
rosa_roxburghii	Rroxscaffold_2G00120020
rosa_rugosa	Rorug02G0250400 Rorug02G0250400 Rorug02G0250500.1
rosa_samantha	Rh2BG317800 Rh2CG296200 Rh2CG301200 Rh2DG333300
rosa_wichuraiana	Rw2G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	454
Acc65I	GGTACC	1 cut(s)	207
AccB1I	GGYRCC	1 cut(s)	207
AciI	CCGC	2 cut(s)	151, 526
AcsI	RAATTY	1 cut(s)	427
AcuI	CTGAAG	2 cut(s)	405, 443
AcyI	GRCGYC	1 cut(s)	451
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	4 cut(s)	157, 177, 204, 241
AgsI	TTSAA	4 cut(s)	115, 344, 359, 433
AjnI	CCWGG	3 cut(s)	6, 90, 234
AluBI	AGCT	2 cut(s)	287, 350
AluI	AGCT	2 cut(s)	287, 350
Alw26I	GTCTC	2 cut(s)	296, 381
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	5 cut(s)	143, 347, 413, 519, 538
ApoI	RAATTY	1 cut(s)	427
ArsI	GACNNNNNNTTYG	2 cut(s)	21, 53
Asp718I	GGTACC	1 cut(s)	207
AspS9I	GGNCC	1 cut(s)	88
AsuHPI	GGTGA	1 cut(s)	184
BanI	GGYRCC	1 cut(s)	207
BbvI	GCAGC	4 cut(s)	130, 359, 400, 531
BccI	CCATC	2 cut(s)	79, 239
BciT130I	CCWGG	3 cut(s)	8, 92, 236
BcoDI	GTCTC	2 cut(s)	296, 381
BfaI	CTAG	1 cut(s)	336
BfmI	CTRYAG	1 cut(s)	414
BisI	GCNGC	5 cut(s)	144, 348, 414, 520, 539
BlsI	GCNGC	5 cut(s)	145, 349, 415, 521, 540
Bme1390I	CCNGG	3 cut(s)	8, 92, 236
BmgT120I	GGNCC	1 cut(s)	88
BmiI	GGNNCC	2 cut(s)	209, 471
BmrFI	CCNGG	3 cut(s)	8, 92, 236
BmsI	GCATC	2 cut(s)	307, 446
BplI	GAGNNNNNCTC	2 cut(s)	317, 349
BpmI	CTGGAG	2 cut(s)	342, 353
Bpu10I	CCTNAGC	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	43
BsaHI	GRCGYC	1 cut(s)	451
BsaI	GGTCTC	1 cut(s)	296
BsaJI	CCNNGG	2 cut(s)	90, 473
Bsc4I	CCNNNNNNNGG	4 cut(s)	157, 177, 204, 241
Bse1I	ACTGG	2 cut(s)	192, 370
BseBI	CCWGG	3 cut(s)	8, 92, 236
BseDI	CCNNGG	2 cut(s)	90, 473
BseGI	GGATG	3 cut(s)	244, 250, 531
BseLI	CCNNNNNNNGG	4 cut(s)	157, 177, 204, 241
BseMII	CTCAG	4 cut(s)	238, 278, 291, 365
BseNI	ACTGG	2 cut(s)	192, 370
BseRI	GAGGAG	1 cut(s)	117
BseXI	GCAGC	4 cut(s)	130, 359, 400, 531
BshFI	GGCC	1 cut(s)	89
BshNI	GGYRCC	1 cut(s)	207
BslFI	GGGAC	2 cut(s)	122, 438
BslI	CCNNNNNNNGG	4 cut(s)	157, 177, 204, 241
BsmAI	GTCTC	2 cut(s)	296, 381
BsmBI	CGTCTC	1 cut(s)	381
BsmFI	GGGAC	2 cut(s)	122, 438
BsmI	GAATGC	1 cut(s)	127
BsnI	GGCC	1 cut(s)	89
Bso31I	GGTCTC	1 cut(s)	296
Bsp143I	GATC	3 cut(s)	24, 104, 310
BspACI	CCGC	2 cut(s)	151, 526
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	4 cut(s)	237, 277, 292, 364
BspLI	GGNNCC	2 cut(s)	209, 471
BspMAI	CTGCAG	1 cut(s)	418
BspT107I	GGYRCC	1 cut(s)	207
BspTNI	GGTCTC	1 cut(s)	296
BsrI	ACTGG	2 cut(s)	192, 370
BssECI	CCNNGG	2 cut(s)	90, 473
BssMI	GATC	3 cut(s)	24, 104, 310
BssNI	GRCGYC	1 cut(s)	451
BssT1I	CCWWGG	1 cut(s)	473
Bst2UI	CCWGG	3 cut(s)	8, 92, 236
Bst6I	CTCTTC	1 cut(s)	354
BstACI	GRCGYC	1 cut(s)	451
BstC8I	GCNNGC	1 cut(s)	495
BstDEI	CTNAG	4 cut(s)	224, 264, 300, 351
BstEII	GGTNACC	1 cut(s)	190
BstF5I	GGATG	3 cut(s)	244, 250, 531
BstKTI	GATC	3 cut(s)	27, 107, 313
BstMAI	GTCTC	2 cut(s)	296, 381
BstMBI	GATC	3 cut(s)	24, 104, 310
BstMWI	GCNNNNNNNGC	2 cut(s)	469, 525
BstNI	CCWGG	3 cut(s)	8, 92, 236
BstPI	GGTNACC	1 cut(s)	190
BstSCI	CCNGG	3 cut(s)	6, 90, 234
BstSFI	CTRYAG	1 cut(s)	414
BstV1I	GCAGC	4 cut(s)	130, 359, 400, 531
BstXI	CCANNNNNNTGG	1 cut(s)	463
BsuRI	GGCC	1 cut(s)	89
BtsCI	GGATG	3 cut(s)	244, 250, 531
Cac8I	GCNNGC	1 cut(s)	495
Cfr13I	GGNCC	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	3 cut(s)	16, 204, 212
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	4 cut(s)	224, 264, 300, 351
DpnI	GATC	3 cut(s)	26, 106, 312
DpnII	GATC	3 cut(s)	24, 104, 310
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
EciI	GGCGGA	1 cut(s)	140
Eco130I	CCWWGG	1 cut(s)	473
Eco31I	GGTCTC	1 cut(s)	296
Eco57I	CTGAAG	2 cut(s)	405, 443
Eco91I	GGTNACC	1 cut(s)	190
EcoO65I	GGTNACC	1 cut(s)	190
EcoRII	CCWGG	3 cut(s)	6, 90, 234
EcoT14I	CCWWGG	1 cut(s)	473
ErhI	CCWWGG	1 cut(s)	473
Esp3I	CGTCTC	1 cut(s)	381
FaeI	CATG	3 cut(s)	19, 207, 215
FaiI	YATR	7 cut(s)	17, 205, 213, 255, 276, 407, 483
FaqI	GGGAC	2 cut(s)	122, 438
FatI	CATG	3 cut(s)	15, 203, 211
FauI	CCCGC	1 cut(s)	533
Fnu4HI	GCNGC	5 cut(s)	144, 348, 414, 520, 539
FokI	GGATG	3 cut(s)	251, 257, 518
Fsp4HI	GCNGC	5 cut(s)	144, 348, 414, 520, 539
FspBI	CTAG	1 cut(s)	336
GluI	GCNGC	5 cut(s)	144, 348, 414, 520, 539
GsuI	CTGGAG	2 cut(s)	342, 353
HaeIII	GGCC	1 cut(s)	89
Hin1I	GRCGYC	1 cut(s)	451
Hin1II	CATG	3 cut(s)	19, 207, 215
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	2 cut(s)	115, 508
HphI	GGTGA	1 cut(s)	184
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	4 cut(s)	120, 231, 423, 442
Hpy188III	TCNNGA	4 cut(s)	99, 266, 299, 314
Hpy8I	GTNNAC	1 cut(s)	13
HpyAV	CCTTC	1 cut(s)	380
HpyCH4IV	ACGT	1 cut(s)	451
HpyCH4V	TGCA	3 cut(s)	416, 485, 519
HpyF10VI	GCNNNNNNNGC	2 cut(s)	469, 525
HpyF3I	CTNAG	4 cut(s)	224, 264, 300, 351
HpySE526I	ACGT	1 cut(s)	451
Hsp92I	GRCGYC	1 cut(s)	451
Hsp92II	CATG	3 cut(s)	19, 207, 215
KpnI	GGTACC	1 cut(s)	211
Kzo9I	GATC	3 cut(s)	24, 104, 310
LmnI	GCTCC	2 cut(s)	130, 469
Lsp1109I	GCAGC	4 cut(s)	130, 359, 400, 531
LweI	GCATC	2 cut(s)	307, 446
MaeI	CTAG	1 cut(s)	336
MaeII	ACGT	1 cut(s)	451
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	3 cut(s)	26, 106, 312
MboI	GATC	3 cut(s)	24, 104, 310
MboII	GAAGA	5 cut(s)	114, 173, 371, 436, 455
MluCI	AATT	1 cut(s)	427
MlyI	GAGTC	1 cut(s)	517
MnlI	CCTC	5 cut(s)	138, 208, 235, 319, 377
MspR9I	CCNGG	3 cut(s)	8, 92, 236
Mva1269I	GAATGC	1 cut(s)	127
MvaI	CCWGG	3 cut(s)	8, 92, 236
MwoI	GCNNNNNNNGC	2 cut(s)	469, 525
NdeII	GATC	3 cut(s)	24, 104, 310
NlaIII	CATG	3 cut(s)	19, 207, 215
NlaIV	GGNNCC	2 cut(s)	209, 471
NmuCI	GTSAC	1 cut(s)	190
PctI	GAATGC	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	115
PkrI	GCNGC	5 cut(s)	145, 349, 415, 521, 540
PleI	GAGTC	1 cut(s)	516
PpsI	GAGTC	1 cut(s)	516
Psp6I	CCWGG	3 cut(s)	6, 90, 234
PspEI	GGTNACC	1 cut(s)	190
PspGI	CCWGG	3 cut(s)	6, 90, 234
PspN4I	GGNNCC	2 cut(s)	209, 471
PspPI	GGNCC	1 cut(s)	88
PstI	CTGCAG	1 cut(s)	418
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SatI	GCNGC	5 cut(s)	144, 348, 414, 520, 539
Sau3AI	GATC	3 cut(s)	24, 104, 310
Sau96I	GGNCC	1 cut(s)	88
SchI	GAGTC	1 cut(s)	517
ScrFI	CCNGG	3 cut(s)	8, 92, 236
SetI	ASST	6 cut(s)	200, 289, 308, 352, 391, 454
SfaNI	GCATC	2 cut(s)	307, 446
SfcI	CTRYAG	1 cut(s)	414
SmlI	CTYRAG	1 cut(s)	58
SmoI	CTYRAG	1 cut(s)	58
Sse9I	AATT	1 cut(s)	427
SsiI	CCGC	2 cut(s)	151, 526
SspI	AATATT	1 cut(s)	218
SspMI	CTAG	1 cut(s)	336
StyD4I	CCNGG	3 cut(s)	6, 90, 234
StyI	CCWWGG	1 cut(s)	473
TaiI	ACGT	1 cut(s)	454
TaqI	TCGA	1 cut(s)	315
TasI	AATT	1 cut(s)	427
TfiI	GAWTC	1 cut(s)	115
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	5 cut(s)	143, 347, 413, 519, 538
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	2 cut(s)	228, 520
TspGWI	ACGGA	1 cut(s)	46
XapI	RAATTY	1 cut(s)	427
XcmI	CCANNNNNNNNNTGG	2 cut(s)	242, 463
XspI	CTAG	1 cut(s)	336
ZraI	GACGTC	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.