Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0006307

Physical Location & Seq

Genomic Coordinates Reverse (-)

34080363 .. 34082854

Gene Structure 2492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG296200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCCTCACATGGACAGATATTTTCGCAAGTTGACTTGTGTCGTTCCTAAAGATGGCCCTGTGGAAGATTTCTCCCCTGAATGGTGGCAACTGGTCACCACCTCTACATGGTACCATGAATATTGGCTCAGTCAGAACCAGGATGAGGATGGTTTCTATGATAATGCTCAGGAAAACTATGACAATGTAGCTGATTTGCTTCCTGAGACCTTTGATCTCGATGCTGGAGAGGACTTCTCTAGTTTTGAAGCAGCTCAGTTTGAAGAGTTCCTCCAGTCGTCTCAAACTGAAGGTAAAAATGCCGGGTTAGATATGAGTGCTGCAGTTCTGAAGAATTTGAAAGCATCAGAAGATAGACGTCCCAAGTTGCTGGTGGAGCCAAGGAAGTATGCAGAGAAGCCAGCCAAGTTTGTGAGTCCAAAATGCAGCCCCCGCTTCATCCAGCAGCCTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009642 GO:0009644 GO:0010035 GO:0042221 GO:0043207 GO:0044424 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2

Protein Analysis

151

Amino Acids

17.57

Weight (kDa)

4.65

Isoelectric Point (pI)

60.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41430 AT2G41430 AT2G41430 AT2G41430 AT2G41430
fragaria_vesca	FvH4_6g24790 FvH4_6g24790
malus_domestica	MD14G1081500.v1.1
prunus_persica	Prupe.7G049200_v2.0.a1 Prupe.7G049200_v2.0.a1
pyrus_communis	pycom12g07430 pycom14g07080
rosa_chinensis	RchiOBHm_Chr2g0124241
rosa_laevigata	RLG00000018791 RLG00000018799
rosa_multiflora	Rmu_co8344463.1_g000001 Rmu_sc0002968.1_g000006 Rmu_sc0005472.1_g000018
rosa_roxburghii	Rroxscaffold_2G00120020
rosa_rugosa	Rorug02G0250400 Rorug02G0250400 Rorug02G0250500.1
rosa_samantha	Rh2BG317800 Rh2CG296200 Rh2CG301200 Rh2DG333300
rosa_wichuraiana	Rw2G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	361
Acc65I	GGTACC	1 cut(s)	111
AccB1I	GGYRCC	1 cut(s)	111
AciI	CCGC	1 cut(s)	433
AcsI	RAATTY	1 cut(s)	334
AcuI	CTGAAG	2 cut(s)	309, 350
AcyI	GRCGYC	1 cut(s)	358
AfaI	GTAC	1 cut(s)	113
AfiI	CCNNNNNNNGG	4 cut(s)	53, 81, 108, 145
AgsI	TTSAA	3 cut(s)	248, 263, 340
AjnI	CCWGG	1 cut(s)	138
AluBI	AGCT	2 cut(s)	191, 254
AluI	AGCT	2 cut(s)	191, 254
Alw26I	GTCTC	2 cut(s)	200, 285
AoxI	GGCC	1 cut(s)	55
ApeKI	GCWGC	4 cut(s)	251, 320, 426, 445
ApoI	RAATTY	1 cut(s)	334
Asp718I	GGTACC	1 cut(s)	111
AspS9I	GGNCC	1 cut(s)	56
AsuC2I	CCSGG	1 cut(s)	304
AsuHPI	GGTGA	1 cut(s)	88
BanI	GGYRCC	1 cut(s)	111
BbvI	GCAGC	3 cut(s)	263, 307, 438
BccI	CCATC	2 cut(s)	47, 143
BciT130I	CCWGG	1 cut(s)	140
BcnI	CCSGG	1 cut(s)	304
BcoDI	GTCTC	2 cut(s)	200, 285
BfaI	CTAG	1 cut(s)	240
BfmI	CTRYAG	1 cut(s)	321
BisI	GCNGC	4 cut(s)	252, 321, 427, 446
BlsI	GCNGC	4 cut(s)	253, 322, 428, 447
Bme1390I	CCNGG	2 cut(s)	140, 304
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	2 cut(s)	113, 378
BmrFI	CCNGG	2 cut(s)	140, 304
BmsI	GCATC	2 cut(s)	211, 353
BoxI	GACNNNNGTC	1 cut(s)	38
BplI	GAGNNNNNCTC	2 cut(s)	221, 253
BpmI	CTGGAG	2 cut(s)	246, 257
Bpu10I	CCTNAGC	1 cut(s)	168
BpuMI	CCSGG	1 cut(s)	304
BsaHI	GRCGYC	1 cut(s)	358
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	4 cut(s)	53, 81, 108, 145
Bse1I	ACTGG	2 cut(s)	96, 274
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	380
BseGI	GGATG	3 cut(s)	148, 154, 438
BseLI	CCNNNNNNNGG	4 cut(s)	53, 81, 108, 145
BseMII	CTCAG	4 cut(s)	142, 182, 195, 269
BseNI	ACTGG	2 cut(s)	96, 274
BseXI	GCAGC	3 cut(s)	263, 307, 438
BshFI	GGCC	1 cut(s)	57
BshNI	GGYRCC	1 cut(s)	111
BsiSI	CCGG	1 cut(s)	303
BslFI	GGGAC	1 cut(s)	345
BslI	CCNNNNNNNGG	4 cut(s)	53, 81, 108, 145
BsmAI	GTCTC	2 cut(s)	200, 285
BsmBI	CGTCTC	1 cut(s)	285
BsmFI	GGGAC	1 cut(s)	345
BsnI	GGCC	1 cut(s)	57
Bso31I	GGTCTC	1 cut(s)	200
Bsp143I	GATC	1 cut(s)	214
BspACI	CCGC	1 cut(s)	433
BspANI	GGCC	1 cut(s)	57
BspCNI	CTCAG	4 cut(s)	141, 181, 196, 268
BspLI	GGNNCC	2 cut(s)	113, 378
BspMAI	CTGCAG	1 cut(s)	325
BspT107I	GGYRCC	1 cut(s)	111
BspTNI	GGTCTC	1 cut(s)	200
BsrI	ACTGG	2 cut(s)	96, 274
BssECI	CCNNGG	1 cut(s)	380
BssMI	GATC	1 cut(s)	214
BssNI	GRCGYC	1 cut(s)	358
BssT1I	CCWWGG	1 cut(s)	380
Bst2UI	CCWGG	1 cut(s)	140
Bst6I	CTCTTC	1 cut(s)	258
BstACI	GRCGYC	1 cut(s)	358
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	4 cut(s)	128, 168, 204, 255
BstEII	GGTNACC	1 cut(s)	94
BstF5I	GGATG	3 cut(s)	148, 154, 438
BstKTI	GATC	1 cut(s)	217
BstMAI	GTCTC	2 cut(s)	200, 285
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	2 cut(s)	376, 432
BstNI	CCWGG	1 cut(s)	140
BstPAI	GACNNNNGTC	1 cut(s)	38
BstPI	GGTNACC	1 cut(s)	94
BstSCI	CCNGG	2 cut(s)	138, 302
BstSFI	CTRYAG	1 cut(s)	321
BstV1I	GCAGC	3 cut(s)	263, 307, 438
BstXI	CCANNNNNNTGG	1 cut(s)	370
BsuRI	GGCC	1 cut(s)	57
BtsCI	GGATG	3 cut(s)	148, 154, 438
Cac8I	GCNNGC	1 cut(s)	402
Cfr13I	GGNCC	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	112
CviAII	CATG	3 cut(s)	10, 108, 116
CviJI	RGCY	9 cut(s)	57, 127, 191, 254, 379, 400, 404, 429, 448
CviKI_1	RGCY	9 cut(s)	57, 127, 191, 254, 379, 400, 404, 429, 448
CviQI	GTAC	1 cut(s)	112
DdeI	CTNAG	4 cut(s)	128, 168, 204, 255
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	380
Eco31I	GGTCTC	1 cut(s)	200
Eco57I	CTGAAG	2 cut(s)	309, 350
Eco91I	GGTNACC	1 cut(s)	94
EcoO65I	GGTNACC	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	380
ErhI	CCWWGG	1 cut(s)	380
Esp3I	CGTCTC	1 cut(s)	285
FaeI	CATG	3 cut(s)	13, 111, 119
FaiI	YATR	7 cut(s)	11, 109, 117, 159, 180, 314, 390
FaqI	GGGAC	1 cut(s)	345
FatI	CATG	3 cut(s)	9, 107, 115
FauI	CCCGC	1 cut(s)	440
Fnu4HI	GCNGC	4 cut(s)	252, 321, 427, 446
FokI	GGATG	3 cut(s)	155, 161, 425
Fsp4HI	GCNGC	4 cut(s)	252, 321, 427, 446
FspBI	CTAG	1 cut(s)	240
GluI	GCNGC	4 cut(s)	252, 321, 427, 446
GsuI	CTGGAG	2 cut(s)	246, 257
HaeIII	GGCC	1 cut(s)	57
HapII	CCGG	1 cut(s)	303
Hin1I	GRCGYC	1 cut(s)	358
Hin1II	CATG	3 cut(s)	13, 111, 119
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HinfI	GANTC	1 cut(s)	415
HpaII	CCGG	1 cut(s)	303
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	3 cut(s)	135, 330, 349
Hpy188III	TCNNGA	3 cut(s)	170, 203, 218
Hpy8I	GTNNAC	1 cut(s)	33
HpyAV	CCTTC	1 cut(s)	284
HpyCH4IV	ACGT	1 cut(s)	358
HpyCH4V	TGCA	3 cut(s)	323, 392, 426
HpyF10VI	GCNNNNNNNGC	2 cut(s)	376, 432
HpyF3I	CTNAG	4 cut(s)	128, 168, 204, 255
HpySE526I	ACGT	1 cut(s)	358
Hsp92I	GRCGYC	1 cut(s)	358
Hsp92II	CATG	3 cut(s)	13, 111, 119
KpnI	GGTACC	1 cut(s)	115
Kzo9I	GATC	1 cut(s)	214
LmnI	GCTCC	1 cut(s)	376
Lsp1109I	GCAGC	3 cut(s)	263, 307, 438
LweI	GCATC	2 cut(s)	211, 353
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	1 cut(s)	358
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	4 cut(s)	77, 275, 343, 362
MluCI	AATT	1 cut(s)	334
MlyI	GAGTC	1 cut(s)	424
MnlI	CCTC	5 cut(s)	15, 112, 139, 223, 281
MspI	CCGG	1 cut(s)	303
MspR9I	CCNGG	2 cut(s)	140, 304
MvaI	CCWGG	1 cut(s)	140
MwoI	GCNNNNNNNGC	2 cut(s)	376, 432
NciI	CCSGG	1 cut(s)	304
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	3 cut(s)	13, 111, 119
NlaIV	GGNNCC	2 cut(s)	113, 378
NmuCI	GTSAC	1 cut(s)	94
PkrI	GCNGC	4 cut(s)	253, 322, 428, 447
PleI	GAGTC	1 cut(s)	423
PpsI	GAGTC	1 cut(s)	423
PshAI	GACNNNNGTC	1 cut(s)	38
Psp6I	CCWGG	1 cut(s)	138
PspEI	GGTNACC	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	138
PspN4I	GGNNCC	2 cut(s)	113, 378
PspPI	GGNCC	1 cut(s)	56
PstI	CTGCAG	1 cut(s)	325
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
SatI	GCNGC	4 cut(s)	252, 321, 427, 446
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	1 cut(s)	56
SchI	GAGTC	1 cut(s)	424
ScrFI	CCNGG	2 cut(s)	140, 304
SetI	ASST	6 cut(s)	104, 193, 212, 256, 295, 361
SfaNI	GCATC	2 cut(s)	211, 353
SfcI	CTRYAG	1 cut(s)	321
Sse9I	AATT	1 cut(s)	334
SsiI	CCGC	1 cut(s)	433
SspI	AATATT	1 cut(s)	122
SspMI	CTAG	1 cut(s)	240
StyD4I	CCNGG	2 cut(s)	138, 302
StyI	CCWWGG	1 cut(s)	380
TaiI	ACGT	1 cut(s)	361
TaqI	TCGA	1 cut(s)	219
TasI	AATT	1 cut(s)	334
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	4 cut(s)	251, 320, 426, 445
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	2 cut(s)	132, 427
XapI	RAATTY	1 cut(s)	334
XcmI	CCANNNNNNNNNTGG	2 cut(s)	146, 370
XspI	CTAG	1 cut(s)	240
ZraI	GACGTC	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.