Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0006307

Physical Location & Seq

Genomic Coordinates Reverse (-)

9354456 .. 9356010

Gene Structure 1555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1081500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCCCTGGTTTCCGGAGGATCAAGATTGAATCCCAACGCCCCTCTCTTTATCCCTGCGGCTCTCCGGCAGGTGGAGGATTTCTCCCCTGAATGGTGGCAACTGGTCACAACCTCCACATGGTACCACGACTACTGGCTCAGTCAGCAGGGTGAGGATGGCTTCTATGATGATACCCAGAATGAAGTTGACAATGTCGCTGATTTGCTTCCGGAGACCTTTGATCTCGATGTTGGTGATGAATTCTCCGGTCTAGAAGCTCAATTTGAAGAGTTCCTTCAGATGTCTCAGACTGAAGGTAAAGATGGGTTTGAGAAGGGCGCTGCGGTCTTGAAGAATTTGAAGTCACTGGAGGACAGACGTCCGAAGTCCCCGGTGGAGCCAAGGAGGTATGCTGAGAAGCCAGCAAAGCATGTGAGCCCGAAATGCAGCCCCCGTTTCATCCAGCAGCCTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009642 GO:0009644 GO:0010035 GO:0042221 GO:0043207 GO:0044424 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2

Protein Analysis

153

Amino Acids

17.35

Weight (kDa)

4.63

Isoelectric Point (pI)

57.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41430 AT2G41430 AT2G41430 AT2G41430 AT2G41430
fragaria_vesca	FvH4_6g24790 FvH4_6g24790
malus_domestica	MD14G1081500.v1.1
prunus_persica	Prupe.7G049200_v2.0.a1 Prupe.7G049200_v2.0.a1
pyrus_communis	pycom12g07430 pycom14g07080
rosa_chinensis	RchiOBHm_Chr2g0124241
rosa_laevigata	RLG00000018791 RLG00000018799
rosa_multiflora	Rmu_co8344463.1_g000001 Rmu_sc0002968.1_g000006 Rmu_sc0005472.1_g000018
rosa_roxburghii	Rroxscaffold_2G00120020
rosa_rugosa	Rorug02G0250400 Rorug02G0250400 Rorug02G0250500.1
rosa_samantha	Rh2BG317800 Rh2CG296200 Rh2CG301200 Rh2DG333300
rosa_wichuraiana	Rw2G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	61
AatII	GACGTC	1 cut(s)	364
Acc36I	ACCTGC	1 cut(s)	61
Acc65I	GGTACC	1 cut(s)	123
AccB1I	GGYRCC	1 cut(s)	123
AccIII	TCCGGA	2 cut(s)	14, 211
AciI	CCGC	2 cut(s)	59, 326
AclWI	GGATC	1 cut(s)	28
AcsI	RAATTY	2 cut(s)	242, 337
AcuI	CTGAAG	2 cut(s)	263, 315
AcyI	GRCGYC	1 cut(s)	361
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	3 cut(s)	73, 93, 120
AgsI	TTSAA	4 cut(s)	31, 269, 334, 343
AjnI	CCWGG	1 cut(s)	6
AluBI	AGCT	1 cut(s)	260
AluI	AGCT	1 cut(s)	260
Alw26I	GTCTC	2 cut(s)	209, 291
AlwI	GGATC	1 cut(s)	28
Aor13HI	TCCGGA	2 cut(s)	14, 211
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	323, 429, 448
ApoI	RAATTY	2 cut(s)	242, 337
Asp718I	GGTACC	1 cut(s)	123
AspLEI	GCGC	1 cut(s)	323
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	374
AsuHPI	GGTGA	2 cut(s)	164, 248
BanI	GGYRCC	1 cut(s)	123
BanII	GRGCYC	1 cut(s)	422
BbvI	GCAGC	2 cut(s)	310, 441
BccI	CCATC	2 cut(s)	152, 299
BciT130I	CCWGG	1 cut(s)	8
BcnI	CCSGG	1 cut(s)	374
BcoDI	GTCTC	2 cut(s)	209, 291
BfaI	CTAG	1 cut(s)	254
BfoI	RGCGCY	1 cut(s)	324
BfuAI	ACCTGC	1 cut(s)	61
BisI	GCNGC	4 cut(s)	60, 324, 430, 449
BlsI	GCNGC	4 cut(s)	61, 325, 431, 450
Bme1390I	CCNGG	2 cut(s)	8, 374
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	125, 381
BmrFI	CCNGG	2 cut(s)	8, 374
BoxI	GACNNNNGTC	1 cut(s)	360
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
BpmI	CTGGAG	1 cut(s)	371
BpuMI	CCSGG	1 cut(s)	374
BsaHI	GRCGYC	1 cut(s)	361
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	3 cut(s)	6, 372, 383
BsaWI	WCCGGW	3 cut(s)	14, 211, 248
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 93, 120
Bse1I	ACTGG	3 cut(s)	108, 140, 354
BseAI	TCCGGA	2 cut(s)	14, 211
BseBI	CCWGG	1 cut(s)	8
BseDI	CCNNGG	3 cut(s)	6, 372, 383
BseGI	GGATG	2 cut(s)	163, 441
BseLI	CCNNNNNNNGG	3 cut(s)	73, 93, 120
BseMII	CTCAG	3 cut(s)	154, 302, 387
BseNI	ACTGG	3 cut(s)	108, 140, 354
BseXI	GCAGC	2 cut(s)	310, 441
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	123
BsiSI	CCGG	5 cut(s)	15, 67, 212, 249, 374
BslFI	GGGAC	1 cut(s)	355
BslI	CCNNNNNNNGG	3 cut(s)	73, 93, 120
BsmAI	GTCTC	2 cut(s)	209, 291
BsmFI	GGGAC	1 cut(s)	355
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	422
Bsp13I	TCCGGA	2 cut(s)	14, 211
Bsp143I	GATC	2 cut(s)	20, 223
BspACI	CCGC	2 cut(s)	59, 326
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	153, 301, 388
BspEI	TCCGGA	2 cut(s)	14, 211
BspLI	GGNNCC	2 cut(s)	125, 381
BspMI	ACCTGC	1 cut(s)	61
BspPI	GGATC	1 cut(s)	28
BspT107I	GGYRCC	1 cut(s)	123
BspTNI	GGTCTC	1 cut(s)	209
BsrI	ACTGG	3 cut(s)	108, 140, 354
BssECI	CCNNGG	3 cut(s)	6, 372, 383
BssMI	GATC	2 cut(s)	20, 223
BssNI	GRCGYC	1 cut(s)	361
BssT1I	CCWWGG	1 cut(s)	383
Bst2UI	CCWGG	1 cut(s)	8
Bst6I	CTCTTC	1 cut(s)	264
BstACI	GRCGYC	1 cut(s)	361
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	3 cut(s)	140, 288, 396
BstF5I	GGATG	2 cut(s)	163, 441
BstH2I	RGCGCY	1 cut(s)	324
BstHHI	GCGC	1 cut(s)	323
BstKTI	GATC	2 cut(s)	23, 226
BstMAI	GTCTC	2 cut(s)	209, 291
BstMBI	GATC	2 cut(s)	20, 223
BstMWI	GCNNNNNNNGC	3 cut(s)	145, 409, 426
BstNI	CCWGG	1 cut(s)	8
BstNSI	RCATGY	1 cut(s)	416
BstPAI	GACNNNNGTC	1 cut(s)	360
BstSCI	CCNGG	2 cut(s)	6, 372
BstV1I	GCAGC	2 cut(s)	310, 441
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	163, 441
BtsIMutI	CAGTG	1 cut(s)	347
BveI	ACCTGC	1 cut(s)	61
Cac8I	GCNNGC	1 cut(s)	405
CfoI	GCGC	1 cut(s)	323
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	2 cut(s)	120, 413
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	3 cut(s)	140, 288, 396
DpnI	GATC	2 cut(s)	22, 225
DpnII	GATC	2 cut(s)	20, 223
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco130I	CCWWGG	1 cut(s)	383
Eco24I	GRGCYC	1 cut(s)	422
Eco31I	GGTCTC	1 cut(s)	209
Eco57I	CTGAAG	2 cut(s)	263, 315
EcoRI	GAATTC	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	383
EcoT38I	GRGCYC	1 cut(s)	422
ErhI	CCWWGG	1 cut(s)	383
FaeI	CATG	2 cut(s)	123, 416
FaiI	YATR	4 cut(s)	121, 168, 393, 414
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FaqI	GGGAC	1 cut(s)	355
FatI	CATG	2 cut(s)	119, 412
Fnu4HI	GCNGC	4 cut(s)	60, 324, 430, 449
FokI	GGATG	2 cut(s)	170, 428
FriOI	GRGCYC	1 cut(s)	422
Fsp4HI	GCNGC	4 cut(s)	60, 324, 430, 449
FspBI	CTAG	1 cut(s)	254
GlaI	GCGC	1 cut(s)	322
GluI	GCNGC	4 cut(s)	60, 324, 430, 449
GsuI	CTGGAG	1 cut(s)	371
HaeII	RGCGCY	1 cut(s)	324
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	5 cut(s)	15, 67, 212, 249, 374
HhaI	GCGC	1 cut(s)	323
Hin1I	GRCGYC	1 cut(s)	361
Hin1II	CATG	2 cut(s)	123, 416
Hin6I	GCGC	1 cut(s)	321
HinP1I	GCGC	1 cut(s)	321
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	1 cut(s)	31
HpaII	CCGG	5 cut(s)	15, 67, 212, 249, 374
HphI	GGTGA	2 cut(s)	164, 248
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	3 cut(s)	282, 291, 366
Hpy188III	TCNNGA	6 cut(s)	15, 24, 212, 227, 254, 331
Hpy8I	GTNNAC	1 cut(s)	190
HpyAV	CCTTC	3 cut(s)	287, 290, 310
HpyCH4IV	ACGT	1 cut(s)	361
HpyCH4V	TGCA	1 cut(s)	429
HpyF10VI	GCNNNNNNNGC	3 cut(s)	145, 409, 426
HpyF3I	CTNAG	3 cut(s)	140, 288, 396
HpySE526I	ACGT	1 cut(s)	361
Hsp92I	GRCGYC	1 cut(s)	361
Hsp92II	CATG	2 cut(s)	123, 416
HspAI	GCGC	1 cut(s)	321
Kpn2I	TCCGGA	2 cut(s)	14, 211
KpnI	GGTACC	1 cut(s)	127
Kzo9I	GATC	2 cut(s)	20, 223
LmnI	GCTCC	1 cut(s)	379
Lsp1109I	GCAGC	2 cut(s)	310, 441
MaeI	CTAG	1 cut(s)	254
MaeII	ACGT	1 cut(s)	361
MaeIII	GTNAC	2 cut(s)	106, 345
MalI	GATC	2 cut(s)	22, 225
MboI	GATC	2 cut(s)	20, 223
MboII	GAAGA	2 cut(s)	281, 346
MhlI	GDGCHC	1 cut(s)	422
MluCI	AATT	3 cut(s)	242, 263, 337
MnlI	CCTC	7 cut(s)	11, 54, 70, 124, 148, 346, 381
MroI	TCCGGA	2 cut(s)	14, 211
MspI	CCGG	5 cut(s)	15, 67, 212, 249, 374
MspR9I	CCNGG	2 cut(s)	8, 374
MvaI	CCWGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	3 cut(s)	145, 409, 426
NciI	CCSGG	1 cut(s)	374
NdeII	GATC	2 cut(s)	20, 223
NlaIII	CATG	2 cut(s)	123, 416
NlaIV	GGNNCC	2 cut(s)	125, 381
NmuCI	GTSAC	2 cut(s)	106, 345
NspI	RCATGY	1 cut(s)	416
PaqCI	CACCTGC	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	31
PflFI	GACNNNGTC	1 cut(s)	194
PkrI	GCNGC	4 cut(s)	61, 325, 431, 450
PshAI	GACNNNNGTC	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	6
PspN4I	GGNNCC	2 cut(s)	125, 381
PspPI	GGNCC	1 cut(s)	4
PsyI	GACNNNGTC	1 cut(s)	194
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SatI	GCNGC	4 cut(s)	60, 324, 430, 449
Sau3AI	GATC	2 cut(s)	20, 223
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	2 cut(s)	8, 374
SduI	GDGCHC	1 cut(s)	422
SetI	ASST	7 cut(s)	75, 116, 221, 262, 301, 364, 392
Sse9I	AATT	3 cut(s)	242, 263, 337
SsiI	CCGC	2 cut(s)	59, 326
SspMI	CTAG	1 cut(s)	254
StyD4I	CCNGG	2 cut(s)	6, 372
StyI	CCWWGG	1 cut(s)	383
TaiI	ACGT	1 cut(s)	364
TaqI	TCGA	1 cut(s)	228
TasI	AATT	3 cut(s)	242, 263, 337
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	1 cut(s)	31
TscAI	CASTG	1 cut(s)	354
TseFI	GTSAC	2 cut(s)	106, 345
TseI	GCWGC	3 cut(s)	323, 429, 448
Tsp45I	GTSAC	2 cut(s)	106, 345
TspDTI	ATGAA	3 cut(s)	198, 255, 430
TspRI	CASTG	1 cut(s)	354
Tth111I	GACNNNGTC	1 cut(s)	194
XapI	RAATTY	2 cut(s)	242, 337
XbaI	TCTAGA	1 cut(s)	253
XceI	RCATGY	1 cut(s)	416
XspI	CTAG	1 cut(s)	254
ZraI	GACGTC	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.