Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0006307

Physical Location & Seq

Genomic Coordinates Reverse (-)

37706495 .. 37708709

Gene Structure 2215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG317800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCCCTGGTTTCAGGAAGATCAACATTGAATCCGAATGCTCCTCTCTTTGTCCCCGCTGCTTTCCGCCAAGTGGAAGATTTCTCCCCTGAATGGTGGCAACTGGTCACCACCTCTACATGGTACCATGAATATTGGCTCAGTCAGAACCAGGATGAGGATGGTTTCTATGATAATGCTCAGGAAAACTATGACAATGTAGCCGATTTGCTTCCTGAGACCTTTGATCTCGATGCTGGAGAGGACTTCTCTAGTTTTGAAGCAGCTCAGTTTGAAGAGTTCCTCCAGTCGTCTCAAACTGAAGGGTTAGATATGAGTGCTGCAGTTCTGAAGAATTTGAAAGCATCAGAAGATAGACGTCCCAAGTTGCTGGTGGAGCCAAGGAAGTATGTAGAGAAGCCAGCCAAGTTTGTGAGTCCAAAATGCAGCCCCCGCTTCATCCAGCAGCCTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009642 GO:0009644 GO:0010035 GO:0042221 GO:0043207 GO:0044424 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2

Protein Analysis

151

Amino Acids

17.39

Weight (kDa)

4.47

Isoelectric Point (pI)

64.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41430 AT2G41430 AT2G41430 AT2G41430 AT2G41430
fragaria_vesca	FvH4_6g24790 FvH4_6g24790
malus_domestica	MD14G1081500.v1.1
prunus_persica	Prupe.7G049200_v2.0.a1 Prupe.7G049200_v2.0.a1
pyrus_communis	pycom12g07430 pycom14g07080
rosa_chinensis	RchiOBHm_Chr2g0124241
rosa_laevigata	RLG00000018791 RLG00000018799
rosa_multiflora	Rmu_co8344463.1_g000001 Rmu_sc0002968.1_g000006 Rmu_sc0005472.1_g000018
rosa_roxburghii	Rroxscaffold_2G00120020
rosa_rugosa	Rorug02G0250400 Rorug02G0250400 Rorug02G0250500.1
rosa_samantha	Rh2BG317800 Rh2CG296200 Rh2CG301200 Rh2DG333300
rosa_wichuraiana	Rw2G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	361
Acc65I	GGTACC	1 cut(s)	123
AccB1I	GGYRCC	1 cut(s)	123
AciI	CCGC	3 cut(s)	57, 67, 433
AcsI	RAATTY	1 cut(s)	334
AcuI	CTGAAG	2 cut(s)	321, 350
AcyI	GRCGYC	1 cut(s)	358
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	4 cut(s)	73, 93, 120, 157
AgsI	TTSAA	4 cut(s)	31, 260, 275, 340
AjnI	CCWGG	2 cut(s)	6, 150
AluBI	AGCT	1 cut(s)	266
AluI	AGCT	1 cut(s)	266
Alw26I	GTCTC	2 cut(s)	212, 297
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	5 cut(s)	59, 263, 320, 426, 445
ApoI	RAATTY	1 cut(s)	334
Asp718I	GGTACC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	100
BanI	GGYRCC	1 cut(s)	123
BbvI	GCAGC	4 cut(s)	46, 275, 307, 438
BccI	CCATC	1 cut(s)	155
BciT130I	CCWGG	2 cut(s)	8, 152
BcoDI	GTCTC	2 cut(s)	212, 297
BfaI	CTAG	1 cut(s)	252
BfmI	CTRYAG	1 cut(s)	321
BisI	GCNGC	5 cut(s)	60, 264, 321, 427, 446
BlsI	GCNGC	5 cut(s)	61, 265, 322, 428, 447
Bme1390I	CCNGG	2 cut(s)	8, 152
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	125, 378
BmrFI	CCNGG	2 cut(s)	8, 152
BmsI	GCATC	2 cut(s)	223, 353
BplI	GAGNNNNNCTC	2 cut(s)	233, 265
BpmI	CTGGAG	2 cut(s)	258, 269
Bpu10I	CCTNAGC	1 cut(s)	180
BsaHI	GRCGYC	1 cut(s)	358
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	2 cut(s)	6, 380
Bsc4I	CCNNNNNNNGG	4 cut(s)	73, 93, 120, 157
Bse1I	ACTGG	2 cut(s)	108, 286
BseBI	CCWGG	2 cut(s)	8, 152
BseDI	CCNNGG	2 cut(s)	6, 380
BseGI	GGATG	3 cut(s)	160, 166, 438
BseLI	CCNNNNNNNGG	4 cut(s)	73, 93, 120, 157
BseMII	CTCAG	4 cut(s)	154, 194, 207, 281
BseNI	ACTGG	2 cut(s)	108, 286
BseRI	GAGGAG	1 cut(s)	33
BseXI	GCAGC	4 cut(s)	46, 275, 307, 438
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	123
BslFI	GGGAC	2 cut(s)	38, 345
BslI	CCNNNNNNNGG	4 cut(s)	73, 93, 120, 157
BsmAI	GTCTC	2 cut(s)	212, 297
BsmBI	CGTCTC	1 cut(s)	297
BsmFI	GGGAC	2 cut(s)	38, 345
BsmI	GAATGC	1 cut(s)	43
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	212
Bsp143I	GATC	2 cut(s)	20, 226
BspACI	CCGC	3 cut(s)	57, 67, 433
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	4 cut(s)	153, 193, 208, 280
BspLI	GGNNCC	2 cut(s)	125, 378
BspMAI	CTGCAG	1 cut(s)	325
BspT107I	GGYRCC	1 cut(s)	123
BspTNI	GGTCTC	1 cut(s)	212
BsrI	ACTGG	2 cut(s)	108, 286
BssECI	CCNNGG	2 cut(s)	6, 380
BssMI	GATC	2 cut(s)	20, 226
BssNI	GRCGYC	1 cut(s)	358
BssT1I	CCWWGG	1 cut(s)	380
Bst2UI	CCWGG	2 cut(s)	8, 152
Bst6I	CTCTTC	1 cut(s)	270
BstACI	GRCGYC	1 cut(s)	358
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	4 cut(s)	140, 180, 216, 267
BstEII	GGTNACC	1 cut(s)	106
BstF5I	GGATG	3 cut(s)	160, 166, 438
BstKTI	GATC	2 cut(s)	23, 229
BstMAI	GTCTC	2 cut(s)	212, 297
BstMBI	GATC	2 cut(s)	20, 226
BstMWI	GCNNNNNNNGC	2 cut(s)	376, 432
BstNI	CCWGG	2 cut(s)	8, 152
BstPI	GGTNACC	1 cut(s)	106
BstSCI	CCNGG	2 cut(s)	6, 150
BstSFI	CTRYAG	1 cut(s)	321
BstV1I	GCAGC	4 cut(s)	46, 275, 307, 438
BstXI	CCANNNNNNTGG	1 cut(s)	370
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	3 cut(s)	160, 166, 438
Cac8I	GCNNGC	1 cut(s)	402
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	2 cut(s)	120, 128
CviJI	RGCY	9 cut(s)	5, 139, 203, 266, 379, 400, 404, 429, 448
CviKI_1	RGCY	9 cut(s)	5, 139, 203, 266, 379, 400, 404, 429, 448
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	4 cut(s)	140, 180, 216, 267
DpnI	GATC	2 cut(s)	22, 228
DpnII	GATC	2 cut(s)	20, 226
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
EciI	GGCGGA	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	380
Eco31I	GGTCTC	1 cut(s)	212
Eco57I	CTGAAG	2 cut(s)	321, 350
Eco91I	GGTNACC	1 cut(s)	106
EcoO65I	GGTNACC	1 cut(s)	106
EcoRII	CCWGG	2 cut(s)	6, 150
EcoT14I	CCWWGG	1 cut(s)	380
ErhI	CCWWGG	1 cut(s)	380
Esp3I	CGTCTC	1 cut(s)	297
FaeI	CATG	2 cut(s)	123, 131
FaiI	YATR	6 cut(s)	121, 129, 171, 192, 314, 390
FaqI	GGGAC	2 cut(s)	38, 345
FatI	CATG	2 cut(s)	119, 127
FauI	CCCGC	2 cut(s)	64, 440
Fnu4HI	GCNGC	5 cut(s)	60, 264, 321, 427, 446
FokI	GGATG	3 cut(s)	167, 173, 425
Fsp4HI	GCNGC	5 cut(s)	60, 264, 321, 427, 446
FspBI	CTAG	1 cut(s)	252
GluI	GCNGC	5 cut(s)	60, 264, 321, 427, 446
GsuI	CTGGAG	2 cut(s)	258, 269
HaeIII	GGCC	1 cut(s)	5
Hin1I	GRCGYC	1 cut(s)	358
Hin1II	CATG	2 cut(s)	123, 131
HinfI	GANTC	2 cut(s)	31, 415
HphI	GGTGA	1 cut(s)	100
Hpy188I	TCNGA	4 cut(s)	36, 147, 330, 349
Hpy188III	TCNNGA	4 cut(s)	15, 182, 215, 230
HpyAV	CCTTC	1 cut(s)	296
HpyCH4IV	ACGT	1 cut(s)	358
HpyCH4V	TGCA	2 cut(s)	323, 426
HpyF10VI	GCNNNNNNNGC	2 cut(s)	376, 432
HpyF3I	CTNAG	4 cut(s)	140, 180, 216, 267
HpySE526I	ACGT	1 cut(s)	358
Hsp92I	GRCGYC	1 cut(s)	358
Hsp92II	CATG	2 cut(s)	123, 131
KpnI	GGTACC	1 cut(s)	127
Kzo9I	GATC	2 cut(s)	20, 226
LmnI	GCTCC	2 cut(s)	46, 376
Lsp1109I	GCAGC	4 cut(s)	46, 275, 307, 438
LweI	GCATC	2 cut(s)	223, 353
MaeI	CTAG	1 cut(s)	252
MaeII	ACGT	1 cut(s)	358
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	2 cut(s)	22, 228
MboI	GATC	2 cut(s)	20, 226
MboII	GAAGA	5 cut(s)	30, 89, 287, 343, 362
MluCI	AATT	1 cut(s)	334
MlyI	GAGTC	1 cut(s)	424
MnlI	CCTC	5 cut(s)	54, 124, 151, 235, 293
MspA1I	CMGCKG	1 cut(s)	59
MspR9I	CCNGG	2 cut(s)	8, 152
Mva1269I	GAATGC	1 cut(s)	43
MvaI	CCWGG	2 cut(s)	8, 152
MwoI	GCNNNNNNNGC	2 cut(s)	376, 432
NdeII	GATC	2 cut(s)	20, 226
NlaIII	CATG	2 cut(s)	123, 131
NlaIV	GGNNCC	2 cut(s)	125, 378
NmuCI	GTSAC	1 cut(s)	106
PctI	GAATGC	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	31
PkrI	GCNGC	5 cut(s)	61, 265, 322, 428, 447
PleI	GAGTC	1 cut(s)	423
PpsI	GAGTC	1 cut(s)	423
Psp6I	CCWGG	2 cut(s)	6, 150
PspEI	GGTNACC	1 cut(s)	106
PspGI	CCWGG	2 cut(s)	6, 150
PspN4I	GGNNCC	2 cut(s)	125, 378
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	325
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SatI	GCNGC	5 cut(s)	60, 264, 321, 427, 446
Sau3AI	GATC	2 cut(s)	20, 226
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	424
ScrFI	CCNGG	2 cut(s)	8, 152
SetI	ASST	4 cut(s)	116, 224, 268, 361
SfaNI	GCATC	2 cut(s)	223, 353
SfcI	CTRYAG	1 cut(s)	321
Sse9I	AATT	1 cut(s)	334
SsiI	CCGC	3 cut(s)	57, 67, 433
SspI	AATATT	1 cut(s)	134
SspMI	CTAG	1 cut(s)	252
StyD4I	CCNGG	2 cut(s)	6, 150
StyI	CCWWGG	1 cut(s)	380
TaiI	ACGT	1 cut(s)	361
TaqI	TCGA	1 cut(s)	231
TasI	AATT	1 cut(s)	334
TfiI	GAWTC	1 cut(s)	31
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	5 cut(s)	59, 263, 320, 426, 445
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	2 cut(s)	144, 427
XapI	RAATTY	1 cut(s)	334
XcmI	CCANNNNNNNNNTGG	2 cut(s)	158, 370
XspI	CTAG	1 cut(s)	252
ZraI	GACGTC	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.